PMID: 30657907

A study in scarlet: MC1R as the main predictor of red hair and exemplar of the flip-flop effect.

Human molecular genetics
Zorina-Lichtenwalter, Katerina K, Lichtenwalter, Ryan N RN, Zaykin, Dima V DV, Parisien, Marc M, Gravel, Simon S, Bortsov, Andrey A, Diatchenko, Luda L
2019-06-15

47 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
16-89986383-C-G MC1R c.717C>G p.G239= Synonymous 1/1 -
16-89987359-A-T MC1R c.*739A>T - 3-UTRSNV 1/1 -
16-89985553-G-A MC1R c.1-114G>A - 5-UTRSNV 1/1 -
15-28356859-C-T HERC2 c.*50G>A - 3-UTRSNV 93/93 -
16-89985557-A-C MC1R c.1-110A>C - 5-UTRSNV 1/1 -
16-89985557-A-T MC1R c.1-110A>T - 5-UTRSNV 1/1 -
9-12709305-C-A TYRP1 c.*123C>A - 3-UTRSNV 8/8 -
14-92801203-G-A SLC24A4 c.241+8881G>A - IntronicSNV - 2/16
16-89818732-C-G FANCA c.2982-102G>C - IntronicSNV - 30/42
16-89985311-A-G MC1R c.1-356A>G - 5-UTRSNV 1/1 -
16-89987201-A-G MC1R c.*581A>G - 3-UTRSNV 1/1 -
20-33218090-G-A PIGU c.529+4329C>T - IntronicSNV - 6/11
16-89986752-T-C MC1R c.*132T>C - 3-UTRSNV 1/1 -
5-33958959-C-A SLC45A2 c.889-4350G>T - IntronicSNV - 3/6
15-28344238-A-G OCA2 c.-22+132T>C - intron_variant - 1/23
15-28335820-A-G OCA2 c.-22+8550T>C - intron_variant - 1/23
15-28335820-A-T OCA2 c.-22+8550T>A - intron_variant - 1/23
16-89986546-G-C MC1R c.880G>C p.D294H Missense 1/1 -
16-89986091-G-A MC1R c.425G>A p.R142H Missense 1/1 -
16-89985918-C-A MC1R c.252C>A p.D84E Missense 1/1 -
16-89986144-C-T MC1R c.478C>T p.R160W Missense 1/1 -
16-89986130-T-C MC1R c.464T>C p.I155T Missense 1/1 -
16-89985844-G-T MC1R c.178G>T p.V60L Missense 1/1 -
16-89986154-G-A MC1R c.488G>A p.R163Q Missense 1/1 -
16-89985940-G-A MC1R c.274G>A p.V92M Missense 1/1 -
16-89986181-G-T MC1R c.515G>T p.S172I Missense 1/1 -
15-28260053-G-A OCA2 c.913C>T p.R305W Missense 9/24 -
15-28230318-C-T OCA2 c.1256G>A p.R419Q Missense 13/24 -
11-88911696-C-A TYR c.575C>A p.S192Y Missense 1/5 -
16-89986303-C-G MC1R c.637C>G p.R213G Missense 1/1 -
16-89986303-C-T MC1R c.637C>T p.R213W Missense 1/1 -
16-89986221-C-T MC1R c.555C>T p.H185= Synonymous 1/1 -
16-89986158-C-T MC1R c.492C>T p.A164= Synonymous 1/1 -
16-89986181-G-A MC1R c.515G>A p.S172N Missense 1/1 -
16-89986383-C-T MC1R c.717C>T p.G239= Synonymous 1/1 -
16-89985778-G-A MC1R c.112G>A p.V38M Missense 1/1 -
16-89985913-T-C MC1R c.247T>C p.S83P Missense 1/1 -
16-89986122-C-A MC1R c.456C>A p.Y152* Nonsense 1/1 -
16-89986503-C-A MC1R c.837C>A p.N279K Missense 1/1 -
16-89986583-G-A MC1R c.917G>A p.R306H Missense 1/1 -
16-89986608-A-G MC1R c.942A>G p.T314= Synonymous 1/1 -
16-89986111-G-A MC1R c.445G>A p.A149T Missense 1/1 -
16-89985950-C-T MC1R c.284C>T p.T95M Missense 1/1 -
11-68846399-A-C TPCN2 c.1450A>C p.M484L Missense 16/25 -
11-68846399-A-T TPCN2 c.1450A>T p.M484L Missense 16/25 -
16-89985750-C-CA MC1R c.86_86dup p.N29Kfs*14 Frameshift 1/1 -
16-89986202-T-TC MC1R c.537_537dup p.I180Hfs*59 Frameshift 1/1 -