PMID: 35379798

KLF5 inhibition overcomes oxaliplatin resistance in patient-derived colorectal cancer organoids by restoring apoptotic response.

Cell death & disease
Shen, Xiaohui X, Zhang, Yuchen Y, Xu, Zhuoqing Z, Gao, Han H, Feng, Wenqing W, Li, Wenchang W, Miao, Yiming Y, Xu, Zifeng Z, Zong, Yaping Y, Zhao, Jingkun J, Lu, Aiguo A
2022-04-05

91 variants were identified in this publication


Variant ID Gene cDNA Protein Consequence Exon Intron
13-28964220-A-T FLT1 c.1682T>A p.V561D Missense 13/30 -
2-29445258-C-T ALK c.3467G>A p.C1156Y Missense 22/29 -
5-74638580-T-C HMGCR c.150T>C p.C50= Synonymous 2/20 -
12-40734193-G-A LRRK2 c.6046G>A p.A2016T Missense 41/51 -
1-24202096-G-A CNR2 c.12C>T p.C4= Synonymous 2/2 -
3-178937746-T-A PIK3CA c.1921T>A p.Y641N Missense 13/21 -
7-116417457-G-A MET c.3274G>A p.V1092I Missense 16/21 -
7-116417464-A-G MET c.3281A>G p.H1094R Missense 16/21 -
3-12641280-A-C RAF1 c.1018T>G p.Y340D Missense 10/17 -
12-58145309-C-G CDK4 c.192G>C p.E64D Missense 2/8 -
12-58145309-C-A CDK4 c.192G>T p.E64D Missense 2/8 -
1-43803840-C-T MPL c.150C>T p.C50= Synonymous 2/12 -
2-204732674-C-T CTLA4 c.9C>T p.C3= Synonymous 1/4 -
14-23390228-A-T PRMT5 c.1799T>A p.V600E Missense 17/17 -
3-178937747-A-T PIK3CA c.1922A>T p.Y641F Missense 13/21 -
13-28980009-C-T FLT1 c.1459G>A p.E487K Missense 11/30 -
3-52712602-G-A PBRM1 c.150C>T p.C50= Synonymous 3/30 -
1-159684258-A-G CRP c.18T>C p.C6= Synonymous 1/2 -
11-20409686-C-T PRMT3 c.150C>T p.C50= Synonymous 2/16 -
12-52448121-T-C NR4A1 c.9T>C p.C3= Synonymous 2/7 -
13-28913346-T-A FLT1 c.2447A>T p.D816V Missense 17/30 -
9-5022002-C-T JAK2 c.15C>T p.C5= Synonymous 3/25 -
5-125930864-A-G ALDH7A1 c.27T>C p.C9= Synonymous 1/18 -
12-57501493-G-A STAT6 c.150C>T p.C50= Synonymous 3/22 -
1-32739939-T-C LCK c.9T>C p.C3= Synonymous 2/13 -
19-41725312-C-T AXL c.15C>T p.C5= Synonymous 1/20 -
13-29068945-G-A FLT1 c.36C>T p.C12= Synonymous 1/30 -
13-29068946-CA-TT FLT1 c.34_35delTGinsAA p.C12N Missense 1/30 -
8-38314947-G-A FGFR1 c.18C>T p.C6= Synonymous 2/18 -
8-42129654-T-C IKBKB c.36T>C p.C12= Synonymous 2/22 -
1-32757806-T-C HDAC1 c.36T>C p.C12= Synonymous 1/14 -
1-27950419-A-G FGR c.9T>C p.C3= Synonymous 3/13 -
13-28913347-C-G FLT1 c.2446G>C p.D816H Missense 17/30 -
22-47116905-G-A CERK c.150C>T p.C50= Synonymous 2/13 -
1-57169876-T-G PRKAA2 c.1021T>G p.Y341D Missense 7/9 -
1-43394625-A-G SLC2A1 c.1052T>C p.M351T Missense 8/10 -
6-31127258-C-T TCF19 c.12C>T p.C4= Synonymous 2/4 -
1-86047134-C-T CCN1 c.150C>T p.C50= Synonymous 2/5 -
17-26125827-A-G NOS2 c.9T>C p.C3= Synonymous 2/27 -
3-52258320-G-A TLR9 c.12C>T p.C4= Synonymous 2/2 -
12-117710229-GA-CT NOS1 c.1799_1800delTCinsAG p.V600E Missense 10/29 -
1-107599487-C-T PRMT6 c.150C>T p.C50= Synonymous 1/1 -
5-176519350-G-T FGFR4 c.756G>T p.Q252H Missense 7/18 -
5-176519350-G-C FGFR4 c.756G>C p.Q252H Missense 7/18 -
1-182811737-T-C DHX9 c.36T>C p.C12= Synonymous 2/28 -
17-64299119-C-T PRKCA c.150C>T p.C50= Synonymous 1/17 -
16-3807299-A-G CREBBP c.3688T>C p.Y1230H Missense 19/31 -
16-23847646-C-T PRKCB c.150C>T p.C50= Synonymous 1/17 -
6-130381242-A-C L3MBTL3 c.821A>C p.D274A Missense 10/23 -
2-231973733-G-A HTR2B c.944C>T p.T315I Missense 4/4 -
10-5139627-T-G AKR1C3 c.254T>G p.L85R Missense 3/9 -
11-57106033-C-T P2RX3 c.9C>T p.C3= Synonymous 1/12 -
11-20385933-T-C HTATIP2 c.150T>C p.I50= Synonymous 1/5 -
11-20385933-T-A HTATIP2 c.150T>A p.I50= Synonymous 1/5 -
8-86253830-TT-CA CA1 c.34_35delAAinsTG p.N12C Missense 2/8 -
12-58145309-CTC-ACA CDK4 c.190_192delGAGinsTGT p.E64C Missense 2/8 -
19-40698088-T-C MAP3K10 c.150T>C p.C50= Synonymous 1/10 -
12-53881167-G-A MAP3K12 c.9C>T p.C3= Synonymous 2/14 -
21-47642576-CC-AT LSS c.395_396delGGinsAT p.R132H Missense 4/22 -
12-40618951-T-C LRRK2 c.18T>C p.C6= Synonymous 1/51 -
1-32757804-TG-AA HDAC1 c.34_35delTGinsAA p.C12N Missense 1/14 -
19-10246897-GT-AG DNMT1 c.4555_4556delACinsCT p.T1519L Missense 38/41 -
4-156824922-C-T TDO2 c.12C>T p.C4= Synonymous 1/12 -
3-89156907-T-C EPHA3 c.9T>C p.C3= Synonymous 1/17 -
7-55273248-AC-CT EGFR c.3571_3572delACinsCT p.T1191L Missense 28/28 -
5-79950288-G-A DHFR c.21C>T p.C7= Synonymous 1/6 -
11-17498306-G-A ABCC8 c.18C>T p.C6= Synonymous 1/39 -
2-209113357-A-G IDH1 c.150T>C p.D50= Synonymous 4/10 -
13-30110317-G-A SLC7A1 c.9C>T p.C3= Synonymous 3/13 -
10-95326492-C-T FFAR4 c.15C>T p.C5= Synonymous 1/3 -
4-87019730-C-T MAPK10 c.749G>A p.G250E Missense 9/14 -
3-9780847-A-T BRPF1 c.764A>T p.E255V Missense 3/14 -
5-63256495-A-G HTR1A c.1052T>C p.M351T Missense 1/1 -
19-14585121-G-A PTGER1 c.12C>T p.C4= Synonymous 2/3 -
10-53667328-G-A PRKG1 c.760G>A p.E254K Missense 5/18 -
17-40871127-C-T EZH1 c.763G>A p.E255K Missense 8/21 -
12-69222676-AGT-CAA MDM2 c.649_651delAGTinsCAA p.S217Q Missense 8/11 -
3-178921462-C-T PIK3CA c.944C>T p.T315I Missense 5/21 -
7-55233046-TC-AG EGFR c.1796_1797delTCinsAG p.V599E Missense 15/28 -
4-55979503-G-A KDR c.944C>T p.T315I Missense 7/30 -
4-1807889-A-G FGFR3 c.1948A>G p.K650E Missense 14/18 -
3-148927016-C-T CP c.763G>A p.E255K Missense 4/19 -
7-116423414-A-G MET c.3689A>G p.Y1230C Missense 19/21 -
7-116423413-T-C MET c.3688T>C p.Y1230H Missense 19/21 -
2-29432664-C-T ALK c.3824G>A p.R1275Q Missense 25/29 -
14-75746588-C-T FOS c.150C>T p.C50= Synonymous 2/4 -
7-116423474-T-C MET c.3749T>C p.M1250T Missense 19/21 -
12-56693950-TCC-ACA CS c.34_36delGGAinsTGT p.G12C Missense 1/11 -
7-116423428-T-G MET c.3703T>G p.Y1235D Missense 19/21 -
3-178936995-TA-AC PIK3CA c.1676_1677delTAinsAC p.V559D Missense 11/21 -
3-12641277-A-C RAF1 c.1021T>G p.Y341D Missense 10/17 -