Publications:

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Past, Present, and Future Perspectives on Computer-Aided Drug Design Methodologies.

Molecules (Basel, Switzerland)

Bassani, Davide D; Moro, Stefano S

Publication Date: 2023-05-05

Variant appearance in text: NRAS: C118S

PubMed Link: 37175316

Variant Present in the following documents:

• molecules-28-03906.pdf

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Computational Insights into the Dynamic Structural Features and Binding Characteristics of Recombinase UvsX Compared with RecA.

Molecules (Basel, Switzerland)

Pan, Yue Y; Xie, Ningkang N; Zhang, Xin X; Yang, Shuo S; Lv, Shaowu S

Publication Date: 2023-04-11

Variant appearance in text: NRAS: C118S

PubMed Link: 37110596

Variant Present in the following documents:

• molecules-28-03363.pdf

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Impacts of Mutations in the P-Loop on Conformational Alterations of KRAS Investigated with Gaussian Accelerated Molecular Dynamics Simulations.

Molecules (Basel, Switzerland)

Shi, Shuhua S; Zheng, Linqi L; Ren, Yonglian Y; Wang, Ziyu Z

Publication Date: 2023-03-23

Variant appearance in text: NRAS: C118S

PubMed Link: 37049650

Variant Present in the following documents:

• molecules-28-02886.pdf

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Deciphering Selectivity Mechanism of BRD9 and TAF1(2) toward Inhibitors Based on Multiple Short Molecular Dynamics Simulations and MM-GBSA Calculations.

Molecules (Basel, Switzerland)

Wang, Lifei L; Wang, Yan Y; Yu, Yingxia Y; Liu, Dong D; Zhao, Juan J; Zhang, Lulu L

Publication Date: 2023-03-12

Variant appearance in text: NRAS: C118S

PubMed Link: 36985555

Variant Present in the following documents:

• molecules-28-02583.pdf

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Binding selectivity-dependent molecular mechanism of inhibitors towards CDK2 and CDK6 investigated by multiple short molecular dynamics and free energy landscapes.

Journal Of Enzyme Inhibition And Medicinal Chemistry

Wang, Lifei L; Lu, Dan D; Wang, Yan Y; Xu, Xiaoyan X; Zhong, Peihua P; Yang, Zhiyong Z

Publication Date: 2023-12

Variant appearance in text: NRAS: C118S

PubMed Link: 36342274

Variant Present in the following documents:

• IENZ_38_2135511.pdf

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Deciphering Conformational Changes of the GDP-Bound NRAS Induced by Mutations G13D, Q61R, and C118S through Gaussian Accelerated Molecular Dynamic Simulations.

Molecules (Basel, Switzerland)

Yu, Zhiping Z; Su, Hongyi H; Chen, Jianzhong J; Hu, Guodong G

Publication Date: 2022-08-30

Variant appearance in text: NRAS: C118S

PubMed Link: 36080363

Variant Present in the following documents:

• Main text
• molecules-27-05596.pdf

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Delineating the RAS Conformational Landscape.

Cancer Research

Parker, Mitchell I MI; Meyer, Joshua E JE; Golemis, Erica A EA; Dunbrack, Roland L RL

Publication Date: 2022-07-05

Variant appearance in text: NRAS: C118S

PubMed Link: 35536216

Variant Present in the following documents:

• can-22-0804_supplementary_datasets_s1-s4_suppsds1-sds4.xlsx, sheet 1

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Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice.

Plos One

Prentice, Leah M LM; Miller, Ruth R RR; Knaggs, Jeff J; Mazloomian, Alborz A; Aguirre Hernandez, Rosalia R; Franchini, Patrick P; Parsa, Kourosh K; Tessier-Cloutier, Basile B; Lapuk, Anna A; Huntsman, David D; Schaeffer, David F DF; Sheffield, Brandon S BS

Publication Date: 2018

Variant appearance in text: NRAS: C118S

PubMed Link: 29698444

Variant Present in the following documents:

• pone.0196434.s001.xlsx, sheet 1

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CoGAPS matrix factorization algorithm identifies transcriptional changes in AP-2alpha target genes in feedback from therapeutic inhibition of the EGFR network.

Oncotarget

Fertig, Elana J EJ; Ozawa, Hiroyuki H; Thakar, Manjusha M; Howard, Jason D JD; Kagohara, Luciane T LT; Krigsfeld, Gabriel G; Ranaweera, Ruchira S RS; Hughes, Robert M RM; Perez, Jimena J; Jones, Siân S; Favorov, Alexander V AV; Carey, Jacob J; Stein-O'Brien, Genevieve G; Gaykalova, Daria A DA; Ochs, Michael F MF; Chung, Christine H CH

Publication Date: 2016-11-08

Variant appearance in text: NRAS: C118S

PubMed Link: 27650546

Variant Present in the following documents:

• oncotarget-07-73845-s007.xlsx, sheet 2

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PGA1-induced apoptosis involves specific activation of H-Ras and N-Ras in cellular endomembranes.

Cell Death & Disease

Anta, B B; Pérez-Rodríguez, A A; Castro, J J; García-Domínguez, C A CA; Ibiza, S S; Martínez, N N; Durá, L M LM; Hernández, S S; Gragera, T T; Peña-Jiménez, D D; Yunta, M M; Zarich, N N; Crespo, P P; Serrador, J M JM; Santos, E E; Muñoz, A A; Oliva, J L JL; Rojas-Cabañeros, J M JM

Publication Date: 2016-07-28

Variant appearance in text: N-ras: C118S

PubMed Link: 27468687

Variant Present in the following documents:

• Main text
• cddis2016219a.pdf

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Regulation of Ras proteins by reactive nitrogen species.

Free Radical Biology & Medicine

Davis, Michael F MF; Vigil, Dom D; Campbell, Sharon L SL

Publication Date: 2011-08-01

Variant appearance in text: N-ras: C118S

PubMed Link: 21616138

Variant Present in the following documents:

• Main text

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