Publications:

---

Identification of antigenic epitopes recognized by tumor infiltrating lymphocytes in high grade serous ovarian cancer by multi-omics profiling of the auto-antigen repertoire.

Cancer Immunology, Immunotherapy : Cii

Millar, Douglas G DG; Yang, S Y Cindy SYC; Sayad, Azin A; Zhao, Qingchuan Q; Nguyen, Linh T LT; Warner, Kathrin K; Sangster, Ami G AG; Nakatsugawa, Munehide M; Murata, Kenji K; Wang, Ben X BX; Shaw, Patricia P; Clarke, Blaise B; Bernardini, Marcus Q MQ; Pugh, Trevor T; Thibault, Pierre P; Hirano, Naoto N; Perreault, Claude C; Ohashi, Pamela S PS

Publication Date: 2023-03-21

Variant appearance in text: ATM: F858L

PubMed Link: 36943460

Variant Present in the following documents:

• 262_2023_3413_MOESM1_ESM.pdf

View BVdb publication page

---

A Phase II Trial of Guadecitabine plus Atezolizumab in Metastatic Urothelial Carcinoma Progressing after Initial Immune Checkpoint Inhibitor Therapy.

Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research

Jang, H Josh HJ; Hostetter, Galen G; MacFarlane, Alexander W AW; Madaj, Zachary Z; Ross, Eric A EA; Hinoue, Toshinori T; Kulchycki, Justin R JR; Burgos, Ryan S RS; Tafseer, Mahvish M; Alpaugh, R Katherine RK; Schwebel, Candice L CL; Kokate, Rutika R; Geynisman, Daniel M DM; Zibelman, Matthew R MR; Ghatalia, Pooja P; Nichols, Peter W PW; Chung, Woonbok W; Madzo, Jozef J; Hahn, Noah M NM; Quinn, David I DI; Issa, Jean-Pierre J JJ; Topper, Michael J MJ; Baylin, Stephen B SB; Shen, Hui H; Campbell, Kerry S KS; Jones, Peter A PA; Plimack, Elizabeth R ER

Publication Date: 2023-03-16

Variant appearance in text: ATM: F858L

PubMed Link: 36928921

Variant Present in the following documents:

• ccr-22-3642_supplementary_tables_1_suppts1.xlsx, sheet 3

View BVdb publication page

---

Evaluation of AlphaFold structure-based protein stability prediction on missense variations in cancer.

Frontiers In Genetics

Keskin Karakoyun, Hilal H; Yüksel, Şirin K ŞK; Amanoglu, Ilayda I; Naserikhojasteh, Lara L; Yeşilyurt, Ahmet A; Yakıcıer, Cengiz C; Timuçin, Emel E; Akyerli, Cemaliye B CB

Publication Date: 2023

Variant appearance in text: ATM: F858L

PubMed Link: 36896237

Variant Present in the following documents:

• Table1.xlsx, sheet 1

View BVdb publication page

---

Comprehensive germline and somatic genomic profiles of Chinese patients with biliary tract cancer.

Frontiers In Oncology

Yu, Haipeng H; Xu, Yan Y; Gao, Wei W; Li, Mei M; He, Ji'an J; Deng, Xiaoqian X; Xing, Wenge W

Publication Date: 2022

Variant appearance in text: ATM: F858L

PubMed Link: 36072793

Variant Present in the following documents:

• Table_2.xlsx, sheet 1

View BVdb publication page

---

Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis.

Nature Genetics

Kar, Siddhartha P SP; Quiros, Pedro M PM; Gu, Muxin M; Jiang, Tao T; Mitchell, Jonathan J; Langdon, Ryan R; Iyer, Vivek V; Barcena, Clea C; Vijayabaskar, M S MS; Fabre, Margarete A MA; Carter, Paul P; Petrovski, Slavé S; Burgess, Stephen S; Vassiliou, George S GS

Publication Date: 2022-08

Variant appearance in text: ATM: F858L

PubMed Link: 35835912

Variant Present in the following documents:

• 41588_2022_1121_MOESM3_ESM.xlsx, sheet 4

View BVdb publication page

---

Serial monitoring of genomic alterations in circulating tumor cells of ER-positive/HER2-negative advanced breast cancer: feasibility of precision oncology biomarker detection.

Molecular Oncology

Cani, Andi K AK; Dolce, Emily M EM; Darga, Elizabeth P EP; Hu, Kevin K; Liu, Chia-Jen CJ; Pierce, Jackie J; Bradbury, Kieran K; Kilgour, Elaine E; Aung, Kimberly K; Schiavon, Gaia G; Carroll, Danielle D; Carr, T Hedley TH; Klinowska, Teresa T; Lindemann, Justin J; Marshall, Gayle G; Rowlands, Vicky V; Harrington, Elizabeth A EA; Barrett, J Carl JC; Sathiyayogan, Nitharsan N; Morrow, Christopher C; Sero, Valeria V; Armstrong, Anne C AC; Baird, Richard R; Hamilton, Erika E; Im, Seock-Ah SA; Jhaveri, Komal K; Patel, Manish R MR; Dive, Caroline C; Tomlins, Scott A SA; Udager, Aaron M AM; Hayes, Daniel F DF; Paoletti, Costanza C

Publication Date: 2022-05

Variant appearance in text: ATM: F858L

PubMed Link: 34866317

Variant Present in the following documents:

• MOL2-16-1969.pdf

View BVdb publication page

---

Mutation profile and immunoscore signature in thymic carcinomas: An exploratory study and review of the literature.

Thoracic Cancer

Asselta, Rosanna R; Di Tommaso, Luca L; Perrino, Matteo M; Destro, Annarita A; Giordano, Laura L; Cardamone, Giulia G; Rubino, Luca L; Santoro, Armando A; Duga, Stefano S; Zucali, Paolo Andrea PA

Publication Date: 2021-05

Variant appearance in text: ATM: Phe858Leu

PubMed Link: 33704917

Variant Present in the following documents:

• TCA-12-1271.pdf

View BVdb publication page

---

The association between ATM variants and risk of breast cancer: a systematic review and meta-analysis.

Bmc Cancer

Moslemi, Masoumeh M; Moradi, Yousef Y; Dehghanbanadaki, Hojat H; Afkhami, Hamed H; Khaledi, Mansoor M; Sedighimehr, Najmeh N; Fathi, Javad J; Sohrabi, Ehsan E

Publication Date: 2021-01-05

Variant appearance in text: ATM: F858L

PubMed Link: 33402103

Variant Present in the following documents:

• Main text
• 12885_2020_Article_7749.pdf

View BVdb publication page

---

Molecular genomic features associated with in vitro response of the NCI-60 cancer cell line panel to natural products.

Molecular Oncology

Krushkal, Julia J; Negi, Simarjeet S; Yee, Laura M LM; Evans, Jason R JR; Grkovic, Tanja T; Palmisano, Alida A; Fang, Jianwen J; Sankaran, Hari H; McShane, Lisa M LM; Zhao, Yingdong Y; O'Keefe, Barry R BR

Publication Date: 2021-02

Variant appearance in text: ATM: F858L

PubMed Link: 33169510

Variant Present in the following documents:

• MOL2-15-381-s009.xlsx, sheet 1

View BVdb publication page

---

Acute Radiation Colitis after Preoperative Short-Course Radiotherapy for Rectal Cancer: A Morphological, Immunohistochemical and Genetic Study.

Cancers

Zanelli, Magda M; Ciarrocchi, Alessia A; De Petris, Giovanni G; Zizzo, Maurizio M; Costantini, Massimo M; Bisagni, Alessandra A; Torricelli, Federica F; Nicoli, Davide D; Ramundo, Dafne D; Ricci, Stefano S; Palicelli, Andrea A; Sanguedolce, Francesca F; Ascani, Stefano S; Castro Ruiz, Carolina C; Annessi, Valerio V; Zamponi, Raffaella R; Bortesi, Mara M; Martino, Veronica V; Marchetti, Marialisa M; De Marco, Loredana L

Publication Date: 2020-09-09

Variant appearance in text: ATM: Phe858Leu

PubMed Link: 32917028

Variant Present in the following documents:

• cancers-12-02571-s001.pdf

View BVdb publication page

---

TRF2 and VEGF-A: an unknown relationship with prognostic impact on survival of colorectal cancer patients.

Journal Of Experimental & Clinical Cancer Research : Cr

Dinami, Roberto R; Porru, Manuela M; Amoreo, Carla Azzurra CA; Sperduti, Isabella I; Mottolese, Marcella M; Buglioni, Simonetta S; Marinelli, Daniele D; Maugeri-Saccà, Marcello M; Sacconi, Andrea A; Blandino, Giovanni G; Leonetti, Carlo C; Di Rocco, Giuliana G; Verdina, Alessandra A; Spinella, Francesca F; Fiorentino, Francesco F; Ciliberto, Gennaro G; Biroccio, Annamaria A; Zizza, Pasquale P

Publication Date: 2020-06-15

Variant appearance in text: ATM: F858L

PubMed Link: 32539869

Variant Present in the following documents:

• 13046_2020_1612_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

---

NF1 patient missense variants predict a role for ATM in modifying neurofibroma initiation.

Acta Neuropathologica

Yu, Yanan Y; Choi, Kwangmin K; Wu, Jianqiang J; Andreassen, Paul R PR; Dexheimer, Phillip J PJ; Keddache, Mehdi M; Brems, Hilde H; Spinner, Robert J RJ; Cancelas, Jose A JA; Martin, Lisa J LJ; Wallace, Margaret R MR; Legius, Eric E; Vogel, Kristine S KS; Ratner, Nancy N

Publication Date: 2020-01

Variant appearance in text: ATM: F858L

PubMed Link: 31664505

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Serial patient-derived orthotopic xenografting of adenoid cystic carcinomas recapitulates stable expression of phenotypic alterations and innervation.

Ebiomedicine

Cornett, Ashley A; Athwal, Harleen K HK; Hill, Emily E; Murphy, George G; Yeoh, Kenji K; Moskaluk, Christopher A CA; Witt, Robert L RL; D'Silva, Nisha J NJ; Agarwal, Seema S; Lombaert, Isabelle M A IMA

Publication Date: 2019-03

Variant appearance in text: ATM: F858L

PubMed Link: 30765319

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

---

KRAS mutation is predictive of outcome in patients with pulmonary sarcomatoid carcinoma.

Histopathology

Mehrad, Mitra M; Roy, Somak S; LaFramboise, William A WA; Petrosko, Patti P; Miller, Caitlyn C; Incharoen, Pimpin P; Dacic, Sanja S

Publication Date: 2018-08

Variant appearance in text: ATM: F858L

PubMed Link: 29489023

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Optimized creation of glioblastoma patient derived xenografts for use in preclinical studies.

Journal Of Translational Medicine

William, Doreen D; Mullins, Christina Susanne CS; Schneider, Björn B; Orthmann, Andrea A; Lamp, Nora N; Krohn, Mathias M; Hoffmann, Annika A; Classen, Carl-Friedrich CF; Linnebacher, Michael M

Publication Date: 2017-02-09

Variant appearance in text: ATM: F858L

PubMed Link: 28183348

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Towards standardization of next-generation sequencing of FFPE samples for clinical oncology: intrinsic obstacles and possible solutions.

Journal Of Translational Medicine

Ivanov, Maxim M; Laktionov, Konstantin K; Breder, Valery V; Chernenko, Polina P; Novikova, Ekaterina E; Telysheva, Ekaterina E; Musienko, Sergey S; Baranova, Ancha A; Mileyko, Vladislav V

Publication Date: 2017-01-31

Variant appearance in text: ATM: Phe858Leu

PubMed Link: 28137276

Variant Present in the following documents:

• Main text

View BVdb publication page

---

MEK inhibitors block growth of lung tumours with mutations in ataxia-telangiectasia mutated.

Nature Communications

Smida, Michal M; Fece de la Cruz, Ferran F; Kerzendorfer, Claudia C; Uras, Iris Z IZ; Mair, Barbara B; Mazouzi, Abdelghani A; Suchankova, Tereza T; Konopka, Tomasz T; Katz, Amanda M AM; Paz, Keren K; Nagy-Bojarszky, Katalin K; Muellner, Markus K MK; Bago-Horvath, Zsuzsanna Z; Haura, Eric B EB; Loizou, Joanna I JI; Nijman, Sebastian M B SM

Publication Date: 2016-12-06

Variant appearance in text: ATM: F858L

PubMed Link: 27922010

Variant Present in the following documents:

• ncomms13701.pdf
• ncomms13701-s4.pdf

View BVdb publication page

---

Clinical significance of frequent somatic mutations detected by high-throughput targeted sequencing in archived colorectal cancer samples.

Journal Of Translational Medicine

Dallol, Ashraf A; Buhmeida, Abdelbaset A; Al-Ahwal, Mahmoud Shaheen MS; Al-Maghrabi, Jaudah J; Bajouh, Osama O; Al-Khayyat, Shadi S; Alam, Rania R; Abusanad, Atlal A; Turki, Rola R; Elaimi, Aisha A; Alhadrami, Hani A HA; Abuzenadah, Mohammed M; Banni, Huda H; Al-Qahtani, Mohammed H MH; Abuzenadah, Adel M AM

Publication Date: 2016-05-04

Variant appearance in text: ATM: Phe858Leu

PubMed Link: 27146902

Variant Present in the following documents:

• Main text
• 12967_2016_Article_878.pdf

View BVdb publication page

---

Validation and utilisation of high-coverage next-generation sequencing to deliver the pharmacological audit trail.

British Journal Of Cancer

Ong, M M; Carreira, S S; Goodall, J J; Mateo, J J; Figueiredo, I I; Rodrigues, D N DN; Perkins, G G; Seed, G G; Yap, T A TA; Attard, G G; de Bono, J S JS

Publication Date: 2014-08-26

Variant appearance in text: ATM: F858L

PubMed Link: 24983367

Variant Present in the following documents:

• bjc2014350a.pdf

View BVdb publication page

---

Integrated analysis of germline and somatic variants in ovarian cancer.

Nature Communications

Kanchi, Krishna L KL; Johnson, Kimberly J KJ; Lu, Charles C; McLellan, Michael D MD; Leiserson, Mark D M MD; Wendl, Michael C MC; Zhang, Qunyuan Q; Koboldt, Daniel C DC; Xie, Mingchao M; Kandoth, Cyriac C; McMichael, Joshua F JF; Wyczalkowski, Matthew A MA; Larson, David E DE; Schmidt, Heather K HK; Miller, Christopher A CA; Fulton, Robert S RS; Spellman, Paul T PT; Mardis, Elaine R ER; Druley, Todd E TE; Graubert, Timothy A TA; Goodfellow, Paul J PJ; Raphael, Benjamin J BJ; Wilson, Richard K RK; Ding, Li L

Publication Date: 2014

Variant appearance in text: ATM: F858L

PubMed Link: 24448499

Variant Present in the following documents:

• NIHMS551112-supplement-9.xlsx, sheet 1

View BVdb publication page

---

Identification of nine genomic regions of amplification in urothelial carcinoma, correlation with stage, and potential prognostic and therapeutic value.

Plos One

Chekaluk, Yvonne Y; Wu, Chin-Lee CL; Rosenberg, Jonathan J; Riester, Markus M; Dai, Qishan Q; Lin, Sharron S; Guo, Yanan Y; McDougal, W Scott WS; Kwiatkowski, David J DJ

Publication Date: 2013

Variant appearance in text: ATM: F858L

PubMed Link: 23593348

Variant Present in the following documents:

• Main text
• pone.0060927.pdf

View BVdb publication page

---

Low expression levels of ATM may substitute for CHEK2 /TP53 mutations predicting resistance towards anthracycline and mitomycin chemotherapy in breast cancer.

Breast Cancer Research : Bcr

Knappskog, Stian S; Chrisanthar, Ranjan R; Løkkevik, Erik E; Anker, Gun G; Østenstad, Bjørn B; Lundgren, Steinar S; Risberg, Terje T; Mjaaland, Ingvil I; Leirvaag, Beryl B; Miletic, Hrvoje H; Lønning, Per E PE

Publication Date: 2012-03-15

Variant appearance in text: ATM: Phe858Leu

PubMed Link: 22420423

Variant Present in the following documents:

• bcr3147.pdf

View BVdb publication page

---

Predicting the functional impact of protein mutations: application to cancer genomics.

Nucleic Acids Research

Reva, Boris B; Antipin, Yevgeniy Y; Sander, Chris C

Publication Date: 2011-09-01

Variant appearance in text: ATM: F858L

PubMed Link: 21727090

Variant Present in the following documents:

• supp_gkr407_Supplement2_Table_SM1_COSMIC_mutations.xls, sheet 1

View BVdb publication page

---

Inherited predisposition to chronic lymphocytic leukemia.

Expert Review Of Hematology

Brown, Jennifer R JR

Publication Date: 2008-10

Variant appearance in text: ATM: F858L

PubMed Link: 19802369

Variant Present in the following documents:

• Main text

View BVdb publication page

---

ATM polymorphisms as risk factors for prostate cancer development.

British Journal Of Cancer

Angèle, S S; Falconer, A A; Edwards, S M SM; Dörk, T T; Bremer, M M; Moullan, N N; Chapot, B B; Muir, K K; Houlston, R R; Norman, A R AR; Bullock, S S; Hope, Q Q; Meitz, J J; Dearnaley, D D; Dowe, A A; Southgate, C C; Ardern-Jones, A A; Easton, D F DF; Eeles, R A RA; Hall, J J

Publication Date: 2004-08-16

Variant appearance in text: ATM: F858L

PubMed Link: 15280931

Variant Present in the following documents:

• Main text
• 91-6602007a.pdf

View BVdb publication page

---

Oligonucleotide microarrays demonstrate the highest frequency of ATM mutations in the mantle cell subtype of lymphoma.

Proceedings Of The National Academy Of Sciences Of The United States Of America

Fang, Nicole Y NY; Greiner, Timothy C TC; Weisenburger, Dennis D DD; Chan, Wing C WC; Vose, Julie M JM; Smith, Lynette M LM; Armitage, James O JO; Mayer, R Aeryn RA; Pike, Brian L BL; Collins, Francis S FS; Hacia, Joseph G JG

Publication Date: 2003-04-29

Variant appearance in text: ATM: F858L

PubMed Link: 12697903

Variant Present in the following documents:

• Main text

View BVdb publication page

---