ATM c.2638+2T>C

Variant ID: 11-108138071-T-C

NM_000051.3(ATM):c.2638+2T>C

This variant was identified in 11 publications

View GRCh38 version.




Publications:


Whole-exome Sequencing of Nigerian Prostate Tumors from the Prostate Cancer Transatlantic Consortium (CaPTC) Reveals DNA Repair Genes Associated with African Ancestry.

Cancer Research Communications
White, Jason A JA; Kaninjing, Ernest T ET; Adeniji, Kayode A KA; Jibrin, Paul P; Obafunwa, John O JO; Ogo, Chidiebere N CN; Mohammed, Faruk F; Popoola, Ademola A; Fatiregun, Omolara A OA; Oluwole, Olabode P OP; Karanam, Balasubramanyam B; Elhussin, Isra I; Ambs, Stefan S; Tang, Wei W; Davis, Melissa M; Polak, Paz P; Campbell, Moray J MJ; Brignole, Kathryn R KR; Rotimi, Solomon O SO; Dean-Colomb, Windy W; Odedina, Folake T FT; Martin, Damali N DN; Yates, Clayton C
Publication Date: 2022-09

Variant appearance in text: ATM: 2638+2T>C; rs587779826
PubMed Link: 36922933
Variant Present in the following documents:
  • crc-22-0136-s01.xlsx, sheet 1
View BVdb publication page



Network expansion of genetic associations defines a pleiotropy map of human cell biology.

Nature Genetics
Barrio-Hernandez, Inigo I; Schwartzentruber, Jeremy J; Shrivastava, Anjali A; Del-Toro, Noemi N; Gonzalez, Asier A; Zhang, Qian Q; Mountjoy, Edward E; Suveges, Daniel D; Ochoa, David D; Ghoussaini, Maya M; Bradley, Glyn G; Hermjakob, Henning H; Orchard, Sandra S; Dunham, Ian I; Anderson, Carl A CA; Porras, Pablo P; Beltrao, Pedro P
Publication Date: 2023-02-23

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 36823319
Variant Present in the following documents:
  • 41588_2023_1327_MOESM4_ESM.xlsx, sheet 6
View BVdb publication page



Systematic review of reported association studies of monogenic genes and bladder cancer risk and confirmation analysis in a large population cohort.

Bjui Compass
Mian, Abrar A; Wei, Jun J; Shi, Zhuqing Z; Rifkin, Andrew S AS; Zheng, S Lilly SL; Glaser, Alexander P AP; Kearns, James T JT; Helfand, Brian T BT; Xu, Jianfeng J
Publication Date: 2023-03

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 36816149
Variant Present in the following documents:
  • BCO2-4-156-s001.xlsx, sheet 1
View BVdb publication page



Circulating messenger RNA variants as a potential biomarker for surveillance of hepatocellular carcinoma.

Frontiers In Oncology
Block, Timothy T; Zezulinski, Daniel D; Kaplan, David E DE; Lu, Jingqiao J; Zanine, Samantha S; Zhan, Tingting T; Doria, Cataldo C; Sayeed, Aejaz A
Publication Date: 2022

Variant appearance in text: rs587779826
PubMed Link: 36582804
Variant Present in the following documents:
  • Table_6.xlsx, sheet 1
View BVdb publication page



Distinct landscapes of deleterious variants in DNA damage repair system in ethnic human populations.

Life Science Alliance
Qin, Zixin Z; Huang, Teng T; Guo, Maoni M; Wang, San Ming SM
Publication Date: 2022-09

Variant appearance in text: ATM: 2638+2T>C; rs587779826
PubMed Link: 35595529
Variant Present in the following documents:
  • LSA-2021-01319_TableS3.xlsx, sheet 1
  • LSA-2021-01319_TableS1.xlsx, sheet 1
View BVdb publication page



Penetrance of Breast Cancer Susceptibility Genes From the eMERGE III Network.

Jnci Cancer Spectrum
Fan, Xiao X; Wynn, Julia J; Shang, Ning N; Liu, Cong C; Fedotov, Alexander A; Hallquist, Miranda L G MLG; Buchanan, Adam H AH; Williams, Marc S MS; Smith, Maureen E ME; Hoell, Christin C; Rasmussen-Torvik, Laura J LJ; Peterson, Josh F JF; Wiesner, Georgia L GL; Murad, Andrea M AM; Jarvik, Gail P GP; Gordon, Adam S AS; Rosenthal, Elisabeth A EA; Stanaway, Ian B IB; Crosslin, David R DR; Larson, Eric B EB; Leppig, Kathleen A KA; Henrikson, Nora B NB; Williams, Janet L JL; Li, Rongling R; Hebbring, Scott S; Weng, Chunhua C; Shen, Yufeng Y; Crew, Katherine D KD; Chung, Wendy K WK
Publication Date: 2021-08

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 34377931
Variant Present in the following documents:
  • pkab044_supplementary_data.pdf
View BVdb publication page



Penetrance of Breast Cancer Susceptibility Genes From the eMERGE III Network.

Jnci Cancer Spectrum
Fan, Xiao X; Wynn, Julia J; Shang, Ning N; Liu, Cong C; Fedotov, Alexander A; Hallquist, Miranda L G MLG; Buchanan, Adam H AH; Williams, Marc S MS; Smith, Maureen E ME; Hoell, Christin C; Rasmussen-Torvik, Laura J LJ; Peterson, Josh F JF; Wiesner, Georgia L GL; Murad, Andrea M AM; Jarvik, Gail P GP; Gordon, Adam S AS; Rosenthal, Elisabeth A EA; Stanaway, Ian B IB; Crosslin, David R DR; Larson, Eric B EB; Leppig, Kathleen A KA; Henrikson, Nora B NB; Williams, Janet L JL; Li, Rongling R; Hebbring, Scott S; Weng, Chunhua C; Shen, Yufeng Y; Crew, Katherine D KD; Chung, Wendy K WK
Publication Date: 2021-08

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 34377931
Variant Present in the following documents:
  • pkab044_supplementary_data.pdf
View BVdb publication page



RNA editing of BFP, a point mutant of GFP, using artificial APOBEC1 deaminase to restore the genetic code.

Scientific Reports
Bhakta, Sonali S; Sakari, Matomo M; Tsukahara, Toshifumi T
Publication Date: 2020-10-14

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 33057101
Variant Present in the following documents:
  • 41598_2020_74374_MOESM2_ESM.xlsx, sheet 1
View BVdb publication page



Single C-to-T substitution using engineered APOBEC3G-nCas9 base editors with minimum genome- and transcriptome-wide off-target effects.

Science Advances
Lee, Sangsin S; Ding, Ning N; Sun, Yidi Y; Yuan, Tanglong T; Li, Jing J; Yuan, Qichen Q; Liu, Lizhong L; Yang, Jie J; Wang, Qian Q; Kolomeisky, Anatoly B AB; Hilton, Isaac B IB; Zuo, Erwei E; Gao, Xue X
Publication Date: 2020-07

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 32832622
Variant Present in the following documents:
  • aba1773_Data_file_S1.xlsx, sheet 2
View BVdb publication page



Sources of discordance among germ-line variant classifications in ClinVar.

Genetics In Medicine : Official Journal Of The American College Of Medical Genetics
Yang, Shan S; Lincoln, Stephen E SE; Kobayashi, Yuya Y; Nykamp, Keith K; Nussbaum, Robert L RL; Topper, Scott S
Publication Date: 2017-10

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 28569743
Variant Present in the following documents:
  • gim201760x7.xlsx, sheet 2
View BVdb publication page



Exome sequencing covers >98% of mutations identified on targeted next generation sequencing panels.

Plos One
LaDuca, Holly H; Farwell, Kelly D KD; Vuong, Huy H; Lu, Hsiao-Mei HM; Mu, Wenbo W; Shahmirzadi, Layla L; Tang, Sha S; Chen, Jefferey J; Bhide, Shruti S; Chao, Elizabeth C EC
Publication Date: 2017

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 28152038
Variant Present in the following documents:
  • pone.0170843.s004.xlsx, sheet 1
  • pone.0170843.s003.xlsx, sheet 1
View BVdb publication page



Pathogenic and likely pathogenic variant prevalence among the first 10,000 patients referred for next-generation cancer panel testing.

Genetics In Medicine : Official Journal Of The American College Of Medical Genetics
Susswein, Lisa R LR; Marshall, Megan L ML; Nusbaum, Rachel R; Vogel Postula, Kristen J KJ; Weissman, Scott M SM; Yackowski, Lauren L; Vaccari, Erica M EM; Bissonnette, Jeffrey J; Booker, Jessica K JK; Cremona, M Laura ML; Gibellini, Federica F; Murphy, Patricia D PD; Pineda-Alvarez, Daniel E DE; Pollevick, Guido D GD; Xu, Zhixiong Z; Richard, Gabi G; Bale, Sherri S; Klein, Rachel T RT; Hruska, Kathleen S KS; Chung, Wendy K WK
Publication Date: 2016-08

Variant appearance in text: ATM: 2638+2T>C
PubMed Link: 26681312
Variant Present in the following documents:
View BVdb publication page