Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease-related patterns.
Genome Research
Jin, Bowen B; Capra, John A JA; Benchek, Penelope P; Wheeler, Nicholas N; Naj, Adam C AC; Hamilton-Nelson, Kara L KL; Farrell, John J JJ; Leung, Yuk Yee YY; Kunkle, Brian B; Vadarajan, Badri B; Schellenberg, Gerard D GD; Mayeux, Richard R; Wang, Li-San LS; Farrer, Lindsay A LA; Pericak-Vance, Margaret A MA; Martin, Eden R ER; Haines, Jonathan L JL; Crawford, Dana C DC; Bush, William S WS
Association Between Common Variants of APOE, ABCA7, A2M, BACE1, and Cerebrospinal Fluid Biomarkers in Alzheimer's Disease: Data from the PUMCH Dementia Cohort.
Journal Of Alzheimer'S Disease : Jad
Dong, Liling L; Mao, Chenhui C; Liu, Caiyan C; Li, Jie J; Huang, Xinying X; Wang, Jie J; Lei, Dan D; Chu, Shanshan S; Sha, Longze L; Xu, Qi Q; Peng, Bin B; Cui, Liying L; Gao, Jing J
Publication Date: 2022
Variant appearance in text: SORL1: 1582G>A; A528T; rs2298813
SORL1 mutation in a Greek family with Parkinson's disease and dementia.
Annals Of Clinical And Translational Neurology
Xiromerisiou, Georgia G; Bourinaris, Thomas T; Houlden, Henry H; Lewis, Patrick A PA; Senkevich, Konstantin K; Hammer, Monia M; Federoff, Monica M; Khan, Alaa A; Spanaki, Cleanthe C; Hadjigeorgiou, Georgios M GM; Bonstanjopoulou, Sevasti S; Fidani, Liana L; Ermolaev, Aleksey A; Gan-Or, Ziv Z; Singleton, Andrew A; Vandrovcova, Jana J; Hardy, John J
Publication Date: 2021-10
Variant appearance in text: SORL1: A528T; rs2298813
Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.
Nature Genetics
Schwartzentruber, Jeremy J; Cooper, Sarah S; Liu, Jimmy Z JZ; Barrio-Hernandez, Inigo I; Bello, Erica E; Kumasaka, Natsuhiko N; Young, Adam M H AMH; Franklin, Robin J M RJM; Johnson, Toby T; Estrada, Karol K; Gaffney, Daniel J DJ; Beltrao, Pedro P; Bassett, Andrew A
Multi-omic comparison of Alzheimer's variants in human ESC-derived microglia reveals convergence at APOE.
The Journal Of Experimental Medicine
Liu, Tongfei T; Zhu, Bing B; Liu, Yan Y; Zhang, Xiaoming X; Yin, Jun J; Li, Xiaoguang X; Jiang, LuLin L; Hodges, Andrew P AP; Rosenthal, Sara Brin SB; Zhou, Lisa L; Yancey, Joel J; McQuade, Amanda A; Blurton-Jones, Mathew M; Tanzi, Rudolph E RE; Huang, Timothy Y TY; Xu, Huaxi H
Publication Date: 2020-12-07
Variant appearance in text: SORL1: A528T; rs2298813
Pathogenic PSEN1 Thr119Ile Mutation in Two Korean Patients with Early-Onset Alzheimer's Disease.
Diagnostics (Basel, Switzerland)
Bagyinszky, Eva E; Lee, Hyon H; Pyun, Jung Min JM; Suh, Jeewon J; Kang, Min Ju MJ; Vo, Van Giau VG; An, Seong Soo A SSA; Park, Kee Hyung KH; Kim, SangYun S
Publication Date: 2020-06-14
Variant appearance in text: SORL1: A528T; rs2298813
Investigating APOE, APP-Aβ metabolism genes and Alzheimer's disease GWAS hits in brain small vessel ischemic disease.
Scientific Reports
Blumenau, Sonja S; Foddis, Marco M; Müller, Susanne S; Holtgrewe, Manuel M; Bentele, Kajetan K; Berchtold, Daniel D; Beule, Dieter D; Dirnagl, Ulrich U; Sassi, Celeste C
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
Publication Date: 2019-10-09
Variant appearance in text: SORL1: A528T; rs2298813
Phenotypic severity in a family with MEND syndrome is directly associated with the accumulation of potentially functional variants of cholesterol homeostasis genes.
Molecular Genetics & Genomic Medicine
Barboza-Cerda, María Carmen MC; Barboza-Quintana, Oralia O; Martínez-Aldape, Gerardo G; Garza-Guajardo, Raquel R; Déctor, Miguel Angel MA
A rare missense variant of CASP7 is associated with familial late-onset Alzheimer's disease.
Alzheimer'S & Dementia : The Journal Of The Alzheimer'S Association
Zhang, Xiaoling X; Zhu, Congcong C; Beecham, Gary G; Vardarajan, Badri N BN; Ma, Yiyi Y; Lancour, Daniel D; Farrell, John J JJ; Chung, Jaeyoon J; , ; Mayeux, Richard R; Haines, Jonathan L JL; Schellenberg, Gerard D GD; Pericak-Vance, Margaret A MA; Lunetta, Kathryn L KL; Farrer, Lindsay A LA
Whole exome sequencing study identifies novel rare and common Alzheimer's-Associated variants involved in immune response and transcriptional regulation.
Molecular Psychiatry
Bis, Joshua C JC; Jian, Xueqiu X; Kunkle, Brian W BW; Chen, Yuning Y; Hamilton-Nelson, Kara L KL; Bush, William S WS; Salerno, William J WJ; Lancour, Daniel D; Ma, Yiyi Y; Renton, Alan E AE; Marcora, Edoardo E; Farrell, John J JJ; Zhao, Yi Y; Qu, Liming L; Ahmad, Shahzad S; Amin, Najaf N; Amouyel, Philippe P; Beecham, Gary W GW; Below, Jennifer E JE; Campion, Dominique D; Cantwell, Laura L; Charbonnier, Camille C; Chung, Jaeyoon J; Crane, Paul K PK; Cruchaga, Carlos C; Cupples, L Adrienne LA; Dartigues, Jean-François JF; Debette, Stéphanie S; Deleuze, Jean-François JF; Fulton, Lucinda L; Gabriel, Stacey B SB; Genin, Emmanuelle E; Gibbs, Richard A RA; Goate, Alison A; Grenier-Boley, Benjamin B; Gupta, Namrata N; Haines, Jonathan L JL; Havulinna, Aki S AS; Helisalmi, Seppo S; Hiltunen, Mikko M; Howrigan, Daniel P DP; Ikram, M Arfan MA; Kaprio, Jaakko J; Konrad, Jan J; Kuzma, Amanda A; Lander, Eric S ES; Lathrop, Mark M; Lehtimäki, Terho T; Lin, Honghuang H; Mattila, Kari K; Mayeux, Richard R; Muzny, Donna M DM; Nasser, Waleed W; Neale, Benjamin B; Nho, Kwangsik K; Nicolas, Gaël G; Patel, Devanshi D; Pericak-Vance, Margaret A MA; Perola, Markus M; Psaty, Bruce M BM; Quenez, Olivier O; Rajabli, Farid F; Redon, Richard R; Reitz, Christiane C; Remes, Anne M AM; Salomaa, Veikko V; Sarnowski, Chloe C; Schmidt, Helena H; Schmidt, Michael M; Schmidt, Reinhold R; Soininen, Hilkka H; Thornton, Timothy A TA; Tosto, Giuseppe G; Tzourio, Christophe C; van der Lee, Sven J SJ; van Duijn, Cornelia M CM; Valladares, Otto O; Vardarajan, Badri B; Wang, Li-San LS; Wang, Weixin W; Wijsman, Ellen E; Wilson, Richard K RK; Witten, Daniela D; Worley, Kim C KC; Zhang, Xiaoling X; , ; Bellenguez, Celine C; Lambert, Jean-Charles JC; Kurki, Mitja I MI; Palotie, Aarno A; Daly, Mark M; Boerwinkle, Eric E; Lunetta, Kathryn L KL; Destefano, Anita L AL; Dupuis, Josée J; Martin, Eden R ER; Schellenberg, Gerard D GD; Seshadri, Sudha S; Naj, Adam C AC; Fornage, Myriam M; Farrer, Lindsay A LA
A likely pathogenic variant putatively affecting splicing of PIGA identified in a multiple congenital anomalies hypotonia-seizures syndrome 2 (MCAHS2) family pedigree via whole-exome sequencing.
Characterization of pathogenic SORL1 genetic variants for association with Alzheimer's disease: a clinical interpretation strategy.
European Journal Of Human Genetics : Ejhg
Holstege, Henne H; van der Lee, Sven J SJ; Hulsman, Marc M; Wong, Tsz Hang TH; van Rooij, Jeroen Gj JG; Weiss, Marjan M; Louwersheimer, Eva E; Wolters, Frank J FJ; Amin, Najaf N; Uitterlinden, André G AG; Hofman, Albert A; Ikram, M Arfan MA; van Swieten, John C JC; Meijers-Heijboer, Hanne H; van der Flier, Wiesje M WM; Reinders, Marcel Jt MJ; van Duijn, Cornelia M CM; Scheltens, Philip P
Rare Genetic Variant in SORL1 May Increase Penetrance of Alzheimer's Disease in a Family with Several Generations of APOE-ɛ4 Homozygosity.
Journal Of Alzheimer'S Disease : Jad
Louwersheimer, Eva E; Cohn-Hokke, Petra E PE; Pijnenburg, Yolande A L YA; Weiss, Marjan M MM; Sistermans, Erik A EA; Rozemuller, Annemieke J AJ; Hulsman, Marc M; van Swieten, John C JC; van Duijn, Cock M CM; Barkhof, Frederik F; Koene, Teddy T; Scheltens, Philip P; Van der Flier, Wiesje M WM; Holstege, Henne H
SORL1 mutations in early- and late-onset Alzheimer disease.
Neurology. Genetics
Cuccaro, Michael L ML; Carney, Regina M RM; Zhang, Yalun Y; Bohm, Christopher C; Kunkle, Brian W BW; Vardarajan, Badri N BN; Whitehead, Patrice L PL; Cukier, Holly N HN; Mayeux, Richard R; St George-Hyslop, Peter P; Pericak-Vance, Margaret A MA
Publication Date: 2016-12
Variant appearance in text: SORL1: A528T; rs2298813
Influence of Coding Variability in APP-Aβ Metabolism Genes in Sporadic Alzheimer's Disease.
Plos One
Sassi, Celeste C; Ridge, Perry G PG; Nalls, Michael A MA; Gibbs, Raphael R; Ding, Jinhui J; Lupton, Michelle K MK; Troakes, Claire C; Lunnon, Katie K; Al-Sarraj, Safa S; Brown, Kristelle S KS; Medway, Christopher C; Lord, Jenny J; Turton, James J; , ; Morgan, Kevin K; Powell, John F JF; Kauwe, John S JS; Cruchaga, Carlos C; Bras, Jose J; Goate, Alison M AM; Singleton, Andrew B AB; Guerreiro, Rita R; Hardy, John J
Publication Date: 2016
Variant appearance in text: SORL1: A528T; rs2298813
A comprehensive study of the genetic impact of rare variants in SORL1 in European early-onset Alzheimer's disease.
Acta Neuropathologica
Verheijen, Jan J; Van den Bossche, Tobi T; van der Zee, Julie J; Engelborghs, Sebastiaan S; Sanchez-Valle, Raquel R; Lladó, Albert A; Graff, Caroline C; Thonberg, Håkan H; Pastor, Pau P; Ortega-Cubero, Sara S; Pastor, Maria A MA; Benussi, Luisa L; Ghidoni, Roberta R; Binetti, Giuliano G; Clarimon, Jordi J; Lleó, Alberto A; Fortea, Juan J; de Mendonça, Alexandre A; Martins, Madalena M; Grau-Rivera, Oriol O; Gelpi, Ellen E; Bettens, Karolien K; Mateiu, Ligia L; Dillen, Lubina L; Cras, Patrick P; De Deyn, Peter P PP; Van Broeckhoven, Christine C; Sleegers, Kristel K
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: SORL1: A528T; rs2298813
Vardarajan, Badri N BN; Zhang, Yalun Y; Lee, Joseph H JH; Cheng, Rong R; Bohm, Christopher C; Ghani, Mahdi M; Reitz, Christiane C; Reyes-Dumeyer, Dolly D; Shen, Yufeng Y; Rogaeva, Ekaterina E; St George-Hyslop, Peter P; Mayeux, Richard R
Publication Date: 2015-02
Variant appearance in text: SORL1: A528T; rs2298813