PC c.1433_1434delinsAG ;(p.T478K)

Variant ID: 11-66620789-GG-CT

NM_001040716.1(PC):c.1433_1434delinsAG;(p.T478K)

This variant was identified in 75 publications

View GRCh38 version.




Publications:


Enhanced stability of the SARS CoV-2 spike glycoprotein following modification of an alanine cavity in the protein core.

Plos Pathogens
Poumbourios, Pantelis P; Langer, Christine C; Boo, Irene I; Zakir, Tasnim T; Center, Rob J RJ; Akerman, Anouschka A; Milogiannakis, Vanessa V; Aggarwal, Anupriya A; Johnstone, Bronte A BA; Ha, Jungmin J; Coulibaly, Fasséli F; Turville, Stuart G SG; Drummer, Heidi E HE
Publication Date: 2023-05-18

Variant appearance in text: PC: T478K
PubMed Link: 37200378
Variant Present in the following documents:
  • ppat.1010981.pdf
View BVdb publication page



Detection of SARS-CoV-2 Variants via Different Diagnostics Assays Based on Single-Nucleotide Polymorphism Analysis.

Diagnostics (Basel, Switzerland)
Specchiarello, Eliana E; Matusali, Giulia G; Carletti, Fabrizio F; Gruber, Cesare Ernesto Maria CEM; Fabeni, Lavinia L; Minosse, Claudia C; Giombini, Emanuela E; Rueca, Martina M; Maggi, Fabrizio F; Amendola, Alessandra A; Garbuglia, Anna Rosa AR
Publication Date: 2023-04-27

Variant appearance in text: PC: T478K
PubMed Link: 37174964
Variant Present in the following documents:
  • diagnostics-13-01573.pdf
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Eight-Month Follow-up After the Third Dose of BNT162b2 Vaccine in Healthcare Workers: The Question of a Fourth Dose.

Journal Of Korean Medical Science
Lim, Sung Hee SH; Choi, Seong Hyeok SH; Kim, Ji Youn JY; Kim, Bora B; Kim, Han Jo HJ; Kim, Se Hyung SH; Kim, Chan Kyu CK; Park, Seong Kyu SK; Yun, Jina J
Publication Date: 2023-05-08

Variant appearance in text: PC: T478K
PubMed Link: 37158775
Variant Present in the following documents:
  • jkms-38-e139.pdf
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Wastewater Genomic Surveillance Captures Early Detection of Omicron in Utah.

Microbiology Spectrum
Gupta, Pooja P; Liao, Stefan S; Ezekiel, Maleea M; Novak, Nicolle N; Rossi, Alessandro A; LaCross, Nathan N; Oakeson, Kelly K; Rohrwasser, Andreas A
Publication Date: 2023-05-08

Variant appearance in text: PC: T478K
PubMed Link: 37154725
Variant Present in the following documents:
  • spectrum.00391-23.pdf
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Clinical Characteristics of SARS-CoV-2 Omicron Cases in Pune, Maharashtra, India.

Cureus
Borse, Rohidas R; Karyakarte, Rajesh P RP; Das, Rashmita R; Yanamandra, Sushma S; Salvi, Sonali S; Bhitkar, Harshal H; Mundhe, Sanjay S; Ogale, Dhananjay D; Radewad, Nagnath N; Joshi, Suvarna S; Karmodiya, Krishanpal K
Publication Date: 2023-04

Variant appearance in text: PC: T478K
PubMed Link: 37143627
Variant Present in the following documents:
  • cureus-0015-00000037032.pdf
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SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 antigen self tests.

Journal Of Clinical Virology : The Official Publication Of The Pan American Society For Clinical Virology
Nguyen, Phuong-Vi PV; Carmola, Ludy Registre LR; Wang, Ethan E; Bassit, Leda L; Rao, Anuradha A; Greenleaf, Morgan M; Sullivan, Julie A JA; Martin, Greg S GS; Lam, Wilbur A WA; Waggoner, Jesse J JJ; Piantadosi, Anne A
Publication Date: 2023-03-24

Variant appearance in text: PC: T478K
PubMed Link: 37028004
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



Evolution of Immune Evasion and Host Range Expansion by the SARS-CoV-2 B.1.1.529 (Omicron) Variant.

Mbio
Ren, Wenlin W; Zhang, Yu Y; Rao, Juhong J; Wang, Ziyi Z; Lan, Jun J; Liu, Kunpeng K; Zhang, Xuekai X; Hu, Xue X; Yang, Chen C; Zhong, Guocai G; Zhang, Rong R; Wang, Xinquan X; Shan, Chao C; Ding, Qiang Q
Publication Date: 2023-04-03

Variant appearance in text: PC: T478K
PubMed Link: 37010428
Variant Present in the following documents:
  • mbio.00416-23.pdf
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Severe acute respiratory syndrome coronavirus 2 evolution: How mutations affect XBB.1.5 variant.

European Journal Of Internal Medicine
Zappa, Martina M; Verdecchia, Paolo P; Angeli, Fabio F
Publication Date: 2023-03-29

Variant appearance in text: PC: T478K
PubMed Link: 37005200
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



Covid-19: virology, variants, and vaccines.

Bmj Medicine
Young, Megan M; Crook, Harry H; Scott, Janet J; Edison, Paul P
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36936563
Variant Present in the following documents:
  • bmjmed-2021-000040.draft_revisions.pdf
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Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics.

Elife
Braet, Sean M SM; Buckley, Theresa S C TSC; Venkatakrishnan, Varun V; Dam, Kim-Marie A KA; Bjorkman, Pamela J PJ; Anand, Ganesh Srinivasan GS
Publication Date: 2023-03-17

Variant appearance in text: PC: T478K
PubMed Link: 36929749
Variant Present in the following documents:
  • elife-82584.pdf
View BVdb publication page



Molecular Characterization of AZD7442 (Tixagevimab-Cilgavimab) Neutralization of SARS-CoV-2 Omicron Subvariants.

Microbiology Spectrum
Roe, Tiffany L TL; Brady, Tyler T; Schuko, Nicolette N; Nguyen, Amy A; Beloor, Jagadish J; Guest, Johnathan D JD; Aksyuk, Anastasia A AA; Tuffy, Kevin M KM; Zhang, Tianhui T; Streicher, Katie K; Kelly, Elizabeth J EJ; Kijak, Gustavo H GH
Publication Date: 2023-03-06

Variant appearance in text: PC: T478K
PubMed Link: 36877050
Variant Present in the following documents:
  • spectrum.00333-23.pdf
View BVdb publication page



Omicron Mutations Increase Interdomain Interactions and Reduce Epitope Exposure in the SARS-CoV-2 Spike.

Iscience
Wieczór, Miłosz M; Tang, Phu K PK; Orozco, Modesto M; Cossio, Pilar P
Publication Date: 2023-01-20

Variant appearance in text: PC: T478K
PubMed Link: 36694788
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



Further quantitative in silico analysis of SARS-CoV-2 S-RBD Omicron BA.4, BA.5, BA.2.75, BQ.1, and BQ.1.1 transmissibility.

Talanta
Hanai, Toshihiko T
Publication Date: 2022-11-23

Variant appearance in text: PC: T478K
PubMed Link: 36462284
Variant Present in the following documents:
  • Main text
  • main.pdf
View BVdb publication page



HAT-field: a cheap, robust and quantitative Point-of-care serological test for Covid-19.

Biology Methods & Protocols
Joly, Etienne E; Maurel Ribes, Agnès A
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36457547
Variant Present in the following documents:
  • bpac026.pdf
View BVdb publication page



Lipid nanoparticles for delivery of RNA therapeutics: Current status and the role of in vivo imaging.

Theranostics
Jung, Han Na HN; Lee, Seok-Yong SY; Lee, Somin S; Youn, Hyewon H; Im, Hyung-Jun HJ
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36438494
Variant Present in the following documents:
  • thnov12p7509.pdf
View BVdb publication page



Nanobody-peptide-conjugate (NPC) for passive immunotherapy against SARS-CoV-2 variants of concern (VoC): a prospective pan-coronavirus therapeutics.

Molecular Diversity
Panda, Mamta M; Kalita, Elora E; Singh, Satyendra S; Kumar, Ketan K; Prajapati, Vijay Kumar VK
Publication Date: 2022-11-18

Variant appearance in text: PC: T478K
PubMed Link: 36400898
Variant Present in the following documents:
  • 11030_2022_Article_10570.pdf
View BVdb publication page



Molecular dynamics study on the strengthening behavior of Delta and Omicron SARS-CoV-2 spike RBD improved receptor-binding affinity.

Plos One
Kodchakorn, Kanchanok K; Kongtawelert, Prachya P
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36395151
Variant Present in the following documents:
  • Main text
  • pone.0277745.pdf
View BVdb publication page



Rapid SARS-CoV-2 Variants Enzymatic Detection (SAVED) by CRISPR-Cas12a.

Microbiology Spectrum
Yang, Jun J; Barua, Nilakshi N; Rahman, Md Nannur MN; Li, Carmen C; Lo, Norman N; Yeong, Kai Yan KY; Tsang, Tsz Fung TF; Yang, Xiao X; Cheung, Yuk-Yam YY; Tsang, Alan K L AKL; Chan, Rickjason C W RCW; Leung, Eddie Chi-Man EC; Chan, Paul K S PKS; Ip, Margaret M
Publication Date: 2022-11-07

Variant appearance in text: PC: T478K
PubMed Link: 36342324
Variant Present in the following documents:
  • spectrum.03260-22.pdf
View BVdb publication page



Neuropilin-1 Mediates SARS-CoV-2 Infection of Astrocytes in Brain Organoids, Inducing Inflammation Leading to Dysfunction and Death of Neurons.

Mbio
Kong, Weili W; Montano, Mauricio M; Corley, Michael J MJ; Helmy, Ekram E; Kobayashi, Hirofumi H; Kinisu, Martin M; Suryawanshi, Rahul R; Luo, Xiaoyu X; Royer, Loic A LA; Roan, Nadia R NR; Ott, Melanie M; Ndhlovu, Lishomwa C LC; Greene, Warner C WC
Publication Date: 2022-10-31

Variant appearance in text: PC: T478K
PubMed Link: 36314791
Variant Present in the following documents:
  • mbio.02308-22.pdf
View BVdb publication page



SARS-CoV-2 Transmission from Human to Pet and Suspected Transmission from Pet to Human, Thailand.

Journal Of Clinical Microbiology
Piewbang, Chutchai C; Poonsin, Panida P; Lohavicharn, Pattiya P; Wardhani, Sabrina Wahyu SW; Dankaona, Wichan W; Puenpa, Jiratchaya J; Poovorawan, Yong Y; Techangamsuwan, Somporn S
Publication Date: 2022-11-16

Variant appearance in text: PC: T478K
PubMed Link: 36314788
Variant Present in the following documents:
  • jcm.01058-22.pdf
View BVdb publication page



COVID-19 Treatment-Current Status, Advances, and Gap.

Pathogens (Basel, Switzerland)
Ho, Chian C; Lee, Ping-Chin PC
Publication Date: 2022-10-18

Variant appearance in text: PC: T478K
PubMed Link: 36297258
Variant Present in the following documents:
  • pathogens-11-01201.pdf
View BVdb publication page



Molecular epidemiology of SARS-CoV-2 in healthcare workers and identification of viral genomic correlates of transmissibility and vaccine break through infection: A retrospective observational study from a cancer hospital in eastern India.

Indian Journal Of Medical Microbiology
Bhattacharya, Sanjay S; Chatterji, Soumyadip S; Chandy, Mammen M; Mahajan, Aseem Yogishwar AY; Goel, Gaurav G; Mishra, Deepak D; Vivek, Priyanka P; Das, Parijat P; Mandal, Sudipto S; Chugani, Anup A; Mittal, Antra A; Perumal, Rajadurai Chinnasamy RC; Ramprasad, Vedam L VL; Gupta, Ravi R
Publication Date: 2022-10-13

Variant appearance in text: PC: T478K
PubMed Link: 36244851
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



Advanced Molecular Tweezers with Lipid Anchors against SARS-CoV-2 and Other Respiratory Viruses.

Jacs Au
Weil, Tatjana T; Kirupakaran, Abbna A; Le, My-Hue MH; Rebmann, Philipp P; Mieres-Perez, Joel J; Issmail, Leila L; Conzelmann, Carina C; Müller, Janis A JA; Rauch, Lena L; Gilg, Andrea A; Wettstein, Lukas L; Groß, Rüdiger R; Read, Clarissa C; Bergner, Tim T; Pålsson, Sandra Axberg SA; Uhlig, Nadja N; Eberlein, Valentina V; Wöll, Heike H; Klärner, Frank-Gerrit FG; Stenger, Steffen S; Kümmerer, Beate M BM; Streeck, Hendrik H; Fois, Giorgio G; Frick, Manfred M; Braubach, Peter P; Spetz, Anna-Lena AL; Grunwald, Thomas T; Shorter, James J; Sanchez-Garcia, Elsa E; Schrader, Thomas T; Münch, Jan J
Publication Date: 2022-09-26

Variant appearance in text: PC: T478K
PubMed Link: 36186568
Variant Present in the following documents:
  • au2c00220_si_003.pdf
View BVdb publication page



Mucosal nanobody IgA as inhalable and affordable prophylactic and therapeutic treatment against SARS-CoV-2 and emerging variants.

Frontiers In Immunology
Li, Qi Q; Humphries, Fiachra F; Girardin, Roxie C RC; Wallace, Aaron A; Ejemel, Monir M; Amcheslavsky, Alla A; McMahon, Conor T CT; Schiller, Zachary A ZA; Ma, Zepei Z; Cruz, John J; Dupuis, Alan P AP; Payne, Anne F AF; Maryam, Arooma A; Yilmaz, Nese Kurt NK; McDonough, Kathleen A KA; Pierce, Brian G BG; Schiffer, Celia A CA; Kruse, Andrew C AC; Klempner, Mark S MS; Cavacini, Lisa A LA; Fitzgerald, Katherine A KA; Wang, Yang Y
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36172366
Variant Present in the following documents:
  • fimmu-13-995412.pdf
View BVdb publication page



Microfluidic affinity selection of active SARS-CoV-2 virus particles.

Science Advances
Gamage, Sachindra S T SST; Pahattuge, Thilanga N TN; Wijerathne, Harshani H; Childers, Katie K; Vaidyanathan, Swarnagowri S; Athapattu, Uditha S US; Zhang, Lulu L; Zhao, Zheng Z; Hupert, Mateusz L ML; Muller, Rolf M RM; Muller-Cohn, Judy J; Dickerson, Janet J; Dufek, Dylan D; Geisbrecht, Brian V BV; Pathak, Harsh H; Pessetto, Ziyan Z; Gan, Gregory N GN; Choi, Junseo J; Park, Sunggook S; Godwin, Andrew K AK; Witek, Malgorzata A MA; Soper, Steven A SA
Publication Date: 2022-09-30

Variant appearance in text: PC: T478K
PubMed Link: 36170362
Variant Present in the following documents:
  • Main text
  • sciadv.abn9665.pdf
View BVdb publication page



Designing multi-epitope based peptide vaccine targeting spike protein SARS-CoV-2 B1.1.529 (Omicron) variant using computational approaches.

Structural Chemistry
Parmar, Meet M; Thumar, Ritik R; Sheth, Jigar J; Patel, Dhaval D
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36160688
Variant Present in the following documents:
  • 11224_2022_Article_2027.pdf
View BVdb publication page



SARS-CoV-2 and COVID-19: A Narrative Review.

British Journal Of Biomedical Science
Blann, A D AD; Heitmar, R R
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 36148046
Variant Present in the following documents:
  • bjbs-79-10426.pdf
View BVdb publication page



Efficacy, safety, and immunogenicity of a booster regimen of Ad26.COV2.S vaccine against COVID-19 (ENSEMBLE2): results of a randomised, double-blind, placebo-controlled, phase 3 trial.

The Lancet. Infectious Diseases
Hardt, Karin K; Vandebosch, An A; Sadoff, Jerald J; Le Gars, Mathieu M; Truyers, Carla C; Lowson, David D; Van Dromme, Ilse I; Vingerhoets, Johan J; Kamphuis, Tobias T; Scheper, Gert G; Ruiz-Guiñazú, Javier J; Faust, Saul N SN; Spinner, Christoph D CD; Schuitemaker, Hanneke H; Van Hoof, Johan J; Douoguih, Macaya M; Struyf, Frank F; ,
Publication Date: 2022-12

Variant appearance in text: PC: T478K
PubMed Link: 36113538
Variant Present in the following documents:
  • mmc1.pdf
View BVdb publication page



Genomic Epidemiology and Serology Associated with a SARS-CoV-2 R.1 Variant Outbreak in New Jersey.

Mbio
Mathema, Barun B; Chen, Liang L; Wang, Pengfei P; Cunningham, Marcus H MH; Mediavilla, Jose R JR; Chow, Kar Fai KF; Luo, Yang Y; Zhao, Yanan Y; Composto, Kaelea K; Zuckerman, Jerry J; Zody, Michael C MC; Wilson, Nancy N; Lee, Annie A; Oschwald, Dayna M DM; Liu, Lihong L; Iketani, Sho S; Germer, Soren S; Fennessey, Samantha S; Wang, Maple M; Kramer, Yael Y; Toole, Patricia P; Maniatis, Tom T; Ho, David D DD; Perlin, David S DS; Kreiswirth, Barry N BN
Publication Date: 2022-10-26

Variant appearance in text: PC: T478K
PubMed Link: 35997285
Variant Present in the following documents:
  • mbio.02141-22.pdf
View BVdb publication page



Kinetics of severe acute respiratory syndrome coronavirus 2 infection antibody responses.

Frontiers In Immunology
Lin, Yajie Y; Zhu, Jiajie J; Liu, Zongming Z; Li, Chaonan C; Guo, Yikai Y; Wang, Ying Y; Chen, Keda K
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35990623
Variant Present in the following documents:
  • fimmu-13-864278.pdf
View BVdb publication page



SARS-CoV-2's Variants of Concern: A Brief Characterization.

Frontiers In Immunology
Scovino, Aline Miranda AM; Dahab, Elizabeth Chen EC; Vieira, Gustavo Fioravanti GF; Freire-de-Lima, Leonardo L; Freire-de-Lima, Celio Geraldo CG; Morrot, Alexandre A
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35958548
Variant Present in the following documents:
  • fimmu-13-834098.pdf
View BVdb publication page



Mild reinfection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Delta variant: First case report from Indonesia.

Frontiers In Medicine
Isnaini, Naniek N; Mardian, Yan Y; Lokida, Dewi D; Budiono, Fajar F; Butar-Butar, Deni P DP; Arlinda, Dona D; Salim, Gustiani G; Kosasih, Herman H; Wulan, Wahyu Nawang WN; Perodin, Jacqueline J; Neal, Aaron A; Lane, H Clifford HC; Karyana, Muhammad M
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35935779
Variant Present in the following documents:
  • fmed-09-906469.pdf
View BVdb publication page



SARS-CoV-2 evolution and patient immunological history shape the breadth and potency of antibody-mediated immunity.

The Journal Of Infectious Diseases
Manali, Maria M; Bissett, Laura A LA; Amat, Julien A R JAR; Logan, Nicola N; Scott, Sam S; Hughes, Ellen C EC; Harvey, William T WT; Orton, Richard R; Thomson, Emma C EC; Gunson, Rory N RN; Viana, Mafalda M; Willett, Brian B; Murcia, Pablo R PR
Publication Date: 2022-08-03

Variant appearance in text: PC: T478K
PubMed Link: 35920058
Variant Present in the following documents:
  • jiac332.pdf
View BVdb publication page



Novel Lateral Flow-Based Assay for Simple and Visual Detection of SARS-CoV-2 Mutations.

Frontiers In Cellular And Infection Microbiology
Gomez-Martinez, Julien J; Henry, Steven S; Tuaillon, Edouard E; Van de Perre, Philippe P; Fournier-Wirth, Chantal C; Foulongne, Vincent V; Brès, Jean-Charles JC
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35909973
Variant Present in the following documents:
  • fcimb-12-902914.pdf
View BVdb publication page



Alveolar macrophages: Achilles' heel of SARS-CoV-2 infection.

Signal Transduction And Targeted Therapy
Wang, Zhenfeng Z; Li, Shunshun S; Huang, Bo B
Publication Date: 2022-07-19

Variant appearance in text: PC: T478K
PubMed Link: 35853858
Variant Present in the following documents:
  • Main text
  • 41392_2022_Article_1106.pdf
View BVdb publication page



Dynamics of the interaction between the receptor-binding domain of SARS-CoV-2 Omicron (B.1.1.529) variant and human angiotensin-converting enzyme 2.

Peerj
Antony, Priya P; Jobe, Amie A; Vijayan, Ranjit R
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35811809
Variant Present in the following documents:
  • peerj-10-13680.pdf
View BVdb publication page



Monoclonal antibody therapies against SARS-CoV-2.

The Lancet. Infectious Diseases
Focosi, Daniele D; McConnell, Scott S; Casadevall, Arturo A; Cappello, Emiliano E; Valdiserra, Giulia G; Tuccori, Marco M
Publication Date: 2022-11

Variant appearance in text: PC: T478K
PubMed Link: 35803289
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



Cross-Reactivity of IgG Antibodies and Virus Neutralization in mRNA-Vaccinated People Against Wild-Type SARS-CoV-2 and the Five Most Common SARS-CoV-2 Variants of Concern.

Frontiers In Immunology
Schwarze, Mandy M; Krizsan, Andor A; Brakel, Alexandra A; Pohl, Fabian F; Volke, Daniela D; Hoffmann, Ralf R
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35784285
Variant Present in the following documents:
  • fimmu-13-915034.pdf
View BVdb publication page



Mutational dynamics across VOCs in International travellers and Community transmission underscores importance of Spike-ACE2 interaction.

Microbiological Research
Mehta, Priyanka P; Ravi, Varsha V; Devi, Priti P; Maurya, Ranjeet R; Parveen, Shaista S; Mishra, Pallavi P; Yadav, Aanchal A; Swaminathan, Aparna A; Saifi, Sheeba S; Khare, Kriti K; Chattopadhyay, Partha P; Yadav, Monika M; Chauhan, Nar Singh NS; Tarai, Bansidhar B; Budhiraja, Sandeep S; Shamim, Uzma U; Pandey, Rajesh R
Publication Date: 2022-09

Variant appearance in text: PC: T478K
PubMed Link: 35779308
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



COVID-19 vaccines: Update of the vaccines in use and under development.

Vacunas
Marta, Rafaela Angotti RA; Nakamura, Gisele Emy Kondo GEK; de Matos Aquino, Bruno B; Bignardi, Paulo R PR
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35761987
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



Real-world clinical outcomes of treatment with casirivimab-imdevimab among patients with mild-to-moderate coronavirus disease 2019 during the Delta variant pandemic.

International Journal Of Medical Sciences
Suzuki, Yasuhito Y; Shibata, Yoko Y; Minemura, Hiroyuki H; Nikaido, Takefumi T; Tanino, Yoshinori Y; Fukuhara, Atsuro A; Kanno, Ryuzo R; Saito, Hiroyuki H; Suzuki, Shuzo S; Ishii, Taeko T; Inokoshi, Yayoi Y; Sando, Eiichiro E; Sakuma, Hirofumi H; Kobayashi, Tatsuho T; Kume, Hiroaki H; Kamimoto, Masahiro M; Aoki, Hideko H; Takama, Akira A; Kamiyama, Takamichi T; Nakayama, Masaru M; Saito, Kiyoshi K; Tanigawa, Koichi K; Sato, Masahiko M; Kanbe, Toshiyuki T; Kanzaki, Norio N; Azuma, Teruhisa T; Sakamoto, Keiji K; Nakamura, Yuichi Y; Ohtani, Hiroshi H; Waragai, Mitsuru M; Maeda, Shinsaku S; Ishida, Tokiya T; Sugino, Keishi K; Tsukada, Yasuhiko Y; Yamada, Ryuki R; Sato, Riko R; Onuma, Takumi T; Tomita, Hikaru H; Saito, Mikako M; Watanabe, Natsumi N; Rikimaru, Mami M; Kawamata, Takaya T; Umeda, Takashi T; Morimoto, Julia J; Togawa, Ryuichi R; Sato, Yuki Y; Saito, Junpei J; Kanazawa, Kenya K; Iseki, Ken K
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35693744
Variant Present in the following documents:
  • ijmsv19p0834.pdf
View BVdb publication page



Therapeutics to tackle Omicron outbreak.

Immunotherapy
Chavda, Vivek P VP; Hanuma Kumar Ghali, Eswara Naga EN; Yallapu, Murali M MM; Apostolopoulos, Vasso V
Publication Date: 2022-08

Variant appearance in text: PC: T478K
PubMed Link: 35678049
Variant Present in the following documents:
  • imt-2022-0064.pdf
View BVdb publication page



Screening and Whole Genome Sequencing of SARS-CoV-2 Circulating During the First Three Waves of the COVID-19 Pandemic in Libreville and the Haut-Ogooué Province in Gabon.

Frontiers In Medicine
Lekana-Douki, Sonia Etenna SE; N'dilimabaka, Nadine N; Levasseur, Anthony A; Colson, Philippe P; Andeko, Julia Cyrielle JC; Zong Minko, Ornella O; Banga Mve-Ella, Octavie O; Fournier, Pierre-Edouard PE; Devaux, Christian C; Ondo, Bertrand Mve BM; Akombi, Falone Larissa FL; Yacka Mouele Bolo, Laurianne L; Ngonga Dikongo, Audrey Michel AM; Diané, Abdoulaye A; Mabika Mabika, Arsène A; Mathouet, Jenny Francine JF; Dzembo, Cresh C; Atiga, Nick Chenis NC; Mouity Matoumba, Anicet A; Ndjangangoye, Nal Kennedy NK; Bréchard, Ludivine L; Bedotto-Buffet, Marielle M; Mangombi Pambou, Joa Braithe JB; Kandet Yattara, Marisca M; Mbongo Nkama, Elvire Anita EA; Mintsa Ndong, Armel A; Adegnika, Ayola Akim AA; Raoult, Didier D; Fenollar, Florence F; Lekana-Douki, Jean-Bernard JB
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35655849
Variant Present in the following documents:
  • Main text
  • fmed-09-877391.pdf
View BVdb publication page



Evolving strategy for an evolving virus: Development of real-time PCR assays for detecting all SARS-CoV-2 variants of concern.

Journal Of Virological Methods
Pabbaraju, Kanti K; Zelyas, Nathan N; Wong, Anita A; Croxen, Matthew A MA; Lynch, Tarah T; Buss, Emily E; Murphy, Stephanie S; Shokoples, Sandy S; Kanji, Jamil J; Tipples, Graham G
Publication Date: 2022-09

Variant appearance in text: PC: T478K
PubMed Link: 35644262
Variant Present in the following documents:
  • main.pdf
View BVdb publication page



A conserved subunit vaccine designed against SARS-CoV-2 variants showed evidence in neutralizing the virus.

Applied Microbiology And Biotechnology
Kibria, K M Kaderi KMK; Faruque, Md Omar MO; Islam, Md Shaid Bin MSB; Ullah, Hedayet H; Mahmud, Shafi S; Miah, Mojnu M; Saleh, Amani Ali AA
Publication Date: 2022-06

Variant appearance in text: PC: T478K
PubMed Link: 35612630
Variant Present in the following documents:
  • 253_2022_Article_11988.pdf
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SARS-CoV-2 Variants of Concern Hijack IFITM2 for Efficient Replication in Human Lung Cells.

Journal Of Virology
Nchioua, Rayhane R; Schundner, Annika A; Kmiec, Dorota D; Prelli Bozzo, Caterina C; Zech, Fabian F; Koepke, Lennart L; Graf, Alexander A; Krebs, Stefan S; Blum, Helmut H; Frick, Manfred M; Sparrer, Konstantin M J KMJ; Kirchhoff, Frank F
Publication Date: 2022-06-08

Variant appearance in text: PC: T478K
PubMed Link: 35543509
Variant Present in the following documents:
  • jvi.00594-22.pdf
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SARS-CoV-2 variants - Evolution, spike protein, and vaccines.

Biomedical Journal
Chen, Kai-Wei K KK; Tsung-Ning Huang, Daniel D; Huang, Li-Min LM
Publication Date: 2022-08

Variant appearance in text: PC: T478K
PubMed Link: 35526825
Variant Present in the following documents:
  • main.pdf
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Towards Control and Oversight of SARS-CoV-2 Diagnosis and Monitoring through Multiplexed Quantitative Electroanalytical Immune Response Biosensors.

Angewandte Chemie (International Ed. In English)
Torrente-Rodríguez, Rebeca M RM; Montero-Calle, Ana A; San Bartolomé, Clara C; Cano, Olga O; Vázquez, Mónica M; Iglesias-Caballero, María M; Corral-Lugo, Andrés A; McConnell, Michael J MJ; Pascal, Mariona M; Mas, Vicente V; Pingarrón, José M JM; Barderas, Rodrigo R; Campuzano, Susana S
Publication Date: 2022-07-11

Variant appearance in text: PC: T478K
PubMed Link: 35507573
Variant Present in the following documents:
  • ANIE-61-0-s001.pdf
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Discovery of adapalene and dihydrotachysterol as antiviral agents for the Omicron variant of SARS-CoV-2 through computational drug repurposing.

Molecular Diversity
Fidan, Ozkan O; Mujwar, Somdutt S; Kciuk, Mateusz M
Publication Date: 2022-05-04

Variant appearance in text: PC: T478K
PubMed Link: 35507211
Variant Present in the following documents:
  • 11030_2022_Article_10440.pdf
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Discovery of a new generation of angiotensin receptor blocking drugs: Receptor mechanisms and in silico binding to enzymes relevant to SARS-CoV-2.

Computational And Structural Biotechnology Journal
Ridgway, Harry H; Moore, Graham J GJ; Mavromoustakos, Thomas T; Tsiodras, Sotirios S; Ligielli, Irene I; Kelaidonis, Konstantinos K; Chasapis, Christos T CT; Gadanec, Laura Kate LK; Zulli, Anthony A; Apostolopoulos, Vasso V; Petty, Russell R; Karakasiliotis, Ioannis I; Gorgoulis, Vassilis G VG; Matsoukas, John M JM
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35432786
Variant Present in the following documents:
  • main.pdf
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Binding and neutralizing abilities of antibodies towards SARS-CoV-2 S2 domain.

Human Vaccines & Immunotherapeutics
Gao, Xingsu X; Fan, Linlin L; Zheng, Binyang B; Li, Haoze H; Wang, Jiwei J; Zhang, Li L; Li, Jingxin J; Zhu, Fengcai F
Publication Date: 2022-11-30

Variant appearance in text: PC: T478K
PubMed Link: 35417303
Variant Present in the following documents:
  • KHVI_18_2055373.pdf
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Spike protein of SARS-CoV-2 variants: a brief review and practical implications.

Brazilian Journal Of Microbiology : [Publication Of The Brazilian Society For Microbiology]
Candido, Kattlyn Laryssa KL; Eich, Caio Ricardo CR; de Fariña, Luciana Oliveira LO; Kadowaki, Marina Kimiko MK; da Conceição Silva, José Luis JL; Maller, Alexandre A; Simão, Rita de Cássia Garcia RCG
Publication Date: 2022-09

Variant appearance in text: PC: T478K
PubMed Link: 35397075
Variant Present in the following documents:
  • 42770_2022_Article_743.pdf
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Neutralisation Hierarchy of SARS-CoV-2 Variants of Concern Using Standardised, Quantitative Neutralisation Assays Reveals a Correlation With Disease Severity; Towards Deciphering Protective Antibody Thresholds.

Frontiers In Immunology
Cantoni, Diego D; Mayora-Neto, Martin M; Nadesalingam, Angalee A; Wells, David A DA; Carnell, George W GW; Ohlendorf, Luis L; Ferrari, Matteo M; Palmer, Phil P; Chan, Andrew C Y ACY; Smith, Peter P; Bentley, Emma M EM; Einhauser, Sebastian S; Wagner, Ralf R; Page, Mark M; Raddi, Gianmarco G; Baxendale, Helen H; Castillo-Olivares, Javier J; Heeney, Jonathan J; Temperton, Nigel N
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 35330908
Variant Present in the following documents:
  • fimmu-13-773982.pdf
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Omicron: What Makes the Latest SARS-CoV-2 Variant of Concern So Concerning?

Journal Of Virology
Jung, Christoph C; Kmiec, Dorota D; Koepke, Lennart L; Zech, Fabian F; Jacob, Timo T; Sparrer, Konstantin M J KMJ; Kirchhoff, Frank F
Publication Date: 2022-03-23

Variant appearance in text: PC: T478K
PubMed Link: 35225672
Variant Present in the following documents:
  • jvi.02077-21.pdf
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Final Analysis of Efficacy and Safety of Single-Dose Ad26.COV2.S.

The New England Journal Of Medicine
Sadoff, Jerald J; Gray, Glenda G; Vandebosch, An A; Cárdenas, Vicky V; Shukarev, Georgi G; Grinsztejn, Beatriz B; Goepfert, Paul A PA; Truyers, Carla C; Van Dromme, Ilse I; Spiessens, Bart B; Vingerhoets, Johan J; Custers, Jerome J; Scheper, Gert G; Robb, Merlin L ML; Treanor, John J; Ryser, Martin F MF; Barouch, Dan H DH; Swann, Edith E; Marovich, Mary A MA; Neuzil, Kathleen M KM; Corey, Lawrence L; Stoddard, Jeffrey J; Hardt, Karin K; Ruiz-Guiñazú, Javier J; Le Gars, Mathieu M; Schuitemaker, Hanneke H; Van Hoof, Johan J; Struyf, Frank F; Douoguih, Macaya M; ,
Publication Date: 2022-03-03

Variant appearance in text: PC: T478K
PubMed Link: 35139271
Variant Present in the following documents:
  • NEJMoa2117608_protocol.pdf
  • NEJMoa2117608_appendix.pdf
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In Silico Analyses on the Comparative Potential of Therapeutic Human Monoclonal Antibodies Against Newly Emerged SARS-CoV-2 Variants Bearing Mutant Spike Protein.

Frontiers In Immunology
Das, Nabarun Chandra NC; Chakraborty, Pritha P; Bayry, Jagadeesh J; Mukherjee, Suprabhat S
Publication Date: 2021

Variant appearance in text: PC: T478K
PubMed Link: 35082779
Variant Present in the following documents:
  • Main text
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Persistence of Long-COVID symptoms in a heterogenous prospective cohort.

The Journal Of Infection
Mariani, Chiara C; Borgonovo, Fabio F; Capetti, Amedeo F AF; Oreni, Letizia L; Cossu, Maria Vittoria MV; Pellicciotta, Martina M; Armiento, Luciana L; Bocchio, Simona S; Dedivitiis, Gianfranco G; Lupo, Angelica A; Galli, Massimo M; Rizzardini, Giuliano G
Publication Date: 2022-05

Variant appearance in text: PC: T478K
PubMed Link: 35077770
Variant Present in the following documents:
  • main.pdf
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Quantitative in silico analysis of SARS-CoV-2 S-RBD omicron mutant transmissibility.

Talanta
Hanai, Toshihiko T
Publication Date: 2022-01-07

Variant appearance in text: PC: T478K
PubMed Link: 35026638
Variant Present in the following documents:
  • Main text
  • main.pdf
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Quantitative in silico analysis of SARS-CoV-2 S-RBD omicron mutant transmissibility.

Talanta
Hanai, Toshihiko T
Publication Date: 2022-04-01

Variant appearance in text: PC: T478K
PubMed Link: 35026638
Variant Present in the following documents:
  • Main text
  • main.pdf
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Seasonal Betacoronavirus Antibodies' Expansion Post-BNT161b2 Vaccination Associates with Reduced SARS-CoV-2 VoC Neutralization.

Journal Of Clinical Immunology
Dispinseri, Stefania S; Marzinotto, Ilaria I; Brigatti, Cristina C; Pirillo, Maria Franca MF; Tolazzi, Monica M; Bazzigaluppi, Elena E; Canitano, Andrea A; Borghi, Martina M; Gallinaro, Alessandra A; Caccia, Roberta R; Vercesi, Riccardo R; McKay, Paul F PF; Ciceri, Fabio F; Piemonti, Lorenzo L; Negri, Donatella D; Cinque, Paola P; Cara, Andrea A; Scarlatti, Gabriella G; Lampasona, Vito V
Publication Date: 2022-01-09

Variant appearance in text: PC: T478K
PubMed Link: 35000058
Variant Present in the following documents:
  • Main text
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SARS-CoV-2 reactive and neutralizing antibodies discovered by single-cell sequencing of plasma cells and mammalian display.

Cell Reports
Ehling, Roy A RA; Weber, Cédric R CR; Mason, Derek M DM; Friedensohn, Simon S; Wagner, Bastian B; Bieberich, Florian F; Kapetanovic, Edo E; Vazquez-Lombardi, Rodrigo R; Di Roberto, Raphaël B RB; Hong, Kai-Lin KL; Wagner, Camille C; Pataia, Michele M; Overath, Max D MD; Sheward, Daniel J DJ; Murrell, Ben B; Yermanos, Alexander A; Cuny, Andreas P AP; Savic, Miodrag M; Rudolf, Fabian F; Reddy, Sai T ST
Publication Date: 2021-12-22

Variant appearance in text: PC: T478K
PubMed Link: 34998467
Variant Present in the following documents:
  • Main text
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In-Silico Design of a Novel Tridecapeptide Targeting Spike Protein of SARS-CoV-2 Variants of Concern.

International Journal Of Peptide Research And Therapeutics
Rajpoot, Sajjan S; Solanki, Kundan K; Kumar, Ashutosh A; Zhang, Kam Y J KYJ; Pullamsetti, Soni Savai SS; Savai, Rajkumar R; Faisal, Syed M SM; Pan, Qiuwei Q; Baig, Mirza S MS
Publication Date: 2022

Variant appearance in text: PC: T478K
PubMed Link: 34924897
Variant Present in the following documents:
  • 10989_2021_Article_10339.pdf
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SARS-CoV-2 Delta (B.1.617.2) Variant: A Unique T478K Mutation in Receptor Binding Motif (RBM) of Spike Gene.

Immune Network
Jhun, Hyunjhung H; Park, Ho-Young HY; Hisham, Yasmin Y; Song, Chang-Seon CS; Kim, Soohyun S
Publication Date: 2021-10

Variant appearance in text: PC: T478K
PubMed Link: 34796036
Variant Present in the following documents:
  • in-21-e32.pdf
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Comparing COVID-19 vaccines for their characteristics, efficacy and effectiveness against SARS-CoV-2 and variants of concern: a narrative review.

Clinical Microbiology And Infection : The Official Publication Of The European Society Of Clinical Microbiology And Infectious Diseases
Fiolet, Thibault T; Kherabi, Yousra Y; MacDonald, Conor-James CJ; Ghosn, Jade J; Peiffer-Smadja, Nathan N
Publication Date: 2021-10-27

Variant appearance in text: PC: T478K
PubMed Link: 34715347
Variant Present in the following documents:
  • main.pdf
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Comparing COVID-19 vaccines for their characteristics, efficacy and effectiveness against SARS-CoV-2 and variants of concern: a narrative review.

Clinical Microbiology And Infection : The Official Publication Of The European Society Of Clinical Microbiology And Infectious Diseases
Fiolet, Thibault T; Kherabi, Yousra Y; MacDonald, Conor-James CJ; Ghosn, Jade J; Peiffer-Smadja, Nathan N
Publication Date: 2022-02

Variant appearance in text: PC: T478K
PubMed Link: 34715347
Variant Present in the following documents:
  • main.pdf
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Key substitutions in the spike protein of SARS-CoV-2 variants can predict resistance to monoclonal antibodies, but other substitutions can modify the effects.

Journal Of Virology
Lusvarghi, Sabrina S; Wang, Wei W; Herrup, Rachel R; Neerukonda, Sabari Nath SN; Vassell, Russell R; Bentley, Lisa L; Eakin, Ann E AE; Erlandson, Karl J KJ; Weiss, Carol D CD
Publication Date: 2021-10-20

Variant appearance in text: PC: T478K
PubMed Link: 34668774
Variant Present in the following documents:
  • jvi.01110-21.pdf
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Key Substitutions in the Spike Protein of SARS-CoV-2 Variants Can Predict Resistance to Monoclonal Antibodies, but Other Substitutions Can Modify the Effects.

Journal Of Virology
Lusvarghi, Sabrina S; Wang, Wei W; Herrup, Rachel R; Neerukonda, Sabari Nath SN; Vassell, Russell R; Bentley, Lisa L; Eakin, Ann E AE; Erlandson, Karl J KJ; Weiss, Carol D CD
Publication Date: 2022-01-12

Variant appearance in text: PC: T478K
PubMed Link: 34668774
Variant Present in the following documents:
  • jvi.01110-21.pdf
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