Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice.
Plos One
Prentice, Leah M LM; Miller, Ruth R RR; Knaggs, Jeff J; Mazloomian, Alborz A; Aguirre Hernandez, Rosalia R; Franchini, Patrick P; Parsa, Kourosh K; Tessier-Cloutier, Basile B; Lapuk, Anna A; Huntsman, David D; Schaeffer, David F DF; Sheffield, Brandon S BS
VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.
Nucleic Acids Research
Lai, Zhongwu Z; Markovets, Aleksandra A; Ahdesmaki, Miika M; Chapman, Brad B; Hofmann, Oliver O; McEwen, Robert R; Johnson, Justin J; Dougherty, Brian B; Barrett, J Carl JC; Dry, Jonathan R JR
Different prognostic impact of STK11 mutations in non-squamous non-small-cell lung cancer.
Oncotarget
Pécuchet, Nicolas N; Laurent-Puig, Pierre P; Mansuet-Lupo, Audrey A; Legras, Antoine A; Alifano, Marco M; Pallier, Karine K; Didelot, Audrey A; Gibault, Laure L; Danel, Claire C; Just, Pierre-Alexandre PA; Riquet, Marc M; Le Pimpec-Barthes, Françoise F; Damotte, Diane D; Fabre, Elisabeth E; Blons, Hélène H