Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states.
Cancer Research
Stevens, Laura E LE; Peluffo, Guillermo G; Qiu, Xintao X; Temko, Daniel D; Fassl, Anne A; Li, Zheqi Z; Trinh, Anne A; Seehawer, Marco M; Jovanovic, Bojana B; Aleckovic, Masa M; Wilde, Callahan M CM; Geck, Renee C RC; Shu, Shaokun S; Kingston, Natalie L NL; Harper, Nicholas W NW; Almendro, Vanessa V; Pyke, Alanna L AL; Egri, Shawn B SB; Papanastasiou, Malvina M; Clement, Kendell K; Zhou, Ningxuan N; Walker, Sarah S; Salas, Jacqueline J; Park, So Yeon SY; Frank, David A DA; Meissner, Alexander A; Jaffe, Jacob D JD; Sicinski, Piotr P; Toker, Alex A; Michor, Franziska F; Long, Henry W HW; Overmoyer, Beth A BA; Polyak, Kornelia K
Publication Date: 2022-11-21
Variant appearance in text: ADCY9: 2316A>G; I772M; rs2230739
A stop-gain mutation in GXYLT1 promotes metastasis of colorectal cancer via the MAPK pathway.
Cell Death & Disease
Peng, Lin L; Zhao, Min M; Liu, Tianqi T; Chen, Jiangbo J; Gao, Pin P; Chen, Lei L; Xing, Pu P; Wang, Zaozao Z; Di, Jiabo J; Xu, Qiang Q; Qu, Hong H; Jiang, Beihai B; Su, Xiangqian X
Structural basis of adenylyl cyclase 9 activation.
Nature Communications
Qi, Chao C; Lavriha, Pia P; Mehta, Ved V; Khanppnavar, Basavraj B; Mohammed, Inayathulla I; Li, Yong Y; Lazaratos, Michalis M; Schaefer, Jonas V JV; Dreier, Birgit B; Plückthun, Andreas A; Bondar, Ana-Nicoleta AN; Dessauer, Carmen W CW; Korkhov, Volodymyr M VM
Role of Adenylate Cyclase 9 in the Pharmacogenomic Response to Dalcetrapib: Clinical Paradigm and Molecular Mechanisms in Precision Cardiovascular Medicine.
Circulation. Genomic And Precision Medicine
Rhainds, David D; Packard, Chris J CJ; Brodeur, Mathieu R MR; Niesor, Eric J EJ; Sacks, Frank M FM; Jukema, J Wouter JW; Wright, R Scott RS; Waters, David D DD; Heinonen, Therese T; Black, Donald M DM; Laghrissi-Thode, Fouzia F; Dubé, Marie-Pierre MP; Pfeffer, Marc A MA; Tardif, Jean-Claude JC
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: ADCY9: 2316A>G; I772M; rs2230739
High throughput profiling of undifferentiated pleomorphic sarcomas identifies two main subgroups with distinct immune profile, clinical outcome and sensitivity to targeted therapies.
Ebiomedicine
Toulmonde, Maud M; Lucchesi, Carlo C; Verbeke, Stéphanie S; Crombe, Amandine A; Adam, Julien J; Geneste, Damien D; Chaire, Vanessa V; Laroche-Clary, Audrey A; Perret, Raul R; Bertucci, François F; Bertolo, Frederic F; Bianchini, Laurence L; Dadone-Montaudie, Bérengère B; Hembrough, Todd T; Sweet, Steve S; Kim, Yeoun Jin YJ; Cecchi, Fabiola F; Le Loarer, François F; Italiano, Antoine A
Publication Date: 2020-12
Variant appearance in text: ADCY9: 2316A>G; I772M; rs2230739
Multi-level evidence of an allelic hierarchy of USH2A variants in hearing, auditory processing and speech/language outcomes.
Communications Biology
Perrino, Peter A PA; Talbot, Lidiya L; Kirkland, Rose R; Hill, Amanda A; Rendall, Amanda R AR; Mountford, Hayley S HS; Taylor, Jenny J; , ; Buscarello, Alexzandrea N AN; Lahiri, Nayana N; Saggar, Anand A; Fitch, R Holly RH; Newbury, Dianne F DF
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Publication Date: 2019-03-20
Variant appearance in text: ADCY9: I772M; rs2230739
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.
Cell Death & Disease
Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D
Publication Date: 2019-02-27
Variant appearance in text: ADCY9: 2316A>G; Ile772Met; rs2230739
X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family.
Scientific Reports
Khan, Muhammad Jaseem MJ; Pollock, Nijole N; Jiang, Huaiyang H; Castro, Carlos C; Nazli, Rubina R; Ahmed, Jawad J; Basit, Sulman S; Rajkovic, Aleksandar A; Yatsenko, Alexander N AN
Publication Date: 2018-11-02
Variant appearance in text: ADCY9: I772M; rs2230739
Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study.
The Lancet. Haematology
Ndila, Carolyne M CM; Uyoga, Sophie S; Macharia, Alexander W AW; Nyutu, Gideon G; Peshu, Norbert N; Ojal, John J; Shebe, Mohammed M; Awuondo, Kennedy O KO; Mturi, Neema N; Tsofa, Benjamin B; Sepúlveda, Nuno N; Clark, Taane G TG; Band, Gavin G; Clarke, Geraldine G; Rowlands, Kate K; Hubbart, Christina C; Jeffreys, Anna A; Kariuki, Silvia S; Marsh, Kevin K; Mackinnon, Margaret M; Maitland, Kathryn K; Kwiatkowski, Dominic P DP; Rockett, Kirk A KA; Williams, Thomas N TN; ,
Differential effects of hydrocortisone, prednisone, and dexamethasone on hormonal and pharmacokinetic profiles: a pilot study in children with congenital adrenal hyperplasia.
International Journal Of Pediatric Endocrinology
Nebesio, Todd D TD; Renbarger, Jamie L JL; Nabhan, Zeina M ZM; Ross, Sydney E SE; Slaven, James E JE; Li, Lang L; Walvoord, Emily C EC; Eugster, Erica A EA
Three-dimensional modelling identifies novel genetic dependencies associated with breast cancer progression in the isogenic MCF10 model.
The Journal Of Pathology
Maguire, Sarah L SL; Peck, Barrie B; Wai, Patty T PT; Campbell, James J; Barker, Holly H; Gulati, Aditi A; Daley, Frances F; Vyse, Simon S; Huang, Paul P; Lord, Christopher J CJ; Farnie, Gillian G; Brennan, Keith K; Natrajan, Rachael R
Publication Date: 2016-11
Variant appearance in text: ADCY9: I772M; rs2230739
Gene integrated set profile analysis: a context-based approach for inferring biological endpoints.
Nucleic Acids Research
Kowalski, Jeanne J; Dwivedi, Bhakti B; Newman, Scott S; Switchenko, Jeffery M JM; Pauly, Rini R; Gutman, David A DA; Arora, Jyoti J; Gandhi, Khanjan K; Ainslie, Kylie K; Doho, Gregory G; Qin, Zhaohui Z; Moreno, Carlos S CS; Rossi, Michael R MR; Vertino, Paula M PM; Lonial, Sagar S; Bernal-Mizrachi, Leon L; Boise, Lawrence H LH
Publication Date: 2016-04-20
Variant appearance in text: ADCY9: I772M; rs2230739
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: ADCY9: I772M; rs2230739
Association of candidate gene polymorphisms and TGF-beta/IL-10 levels with malaria in three regions of Cameroon: a case-control study.
Malaria Journal
Apinjoh, Tobias O TO; Anchang-Kimbi, Judith K JK; Njua-Yafi, Clarisse C; Ngwai, André N AN; Mugri, Regina N RN; Clark, Taane G TG; Rockett, Kirk A KA; Kwiatkowski, Dominic P DP; Achidi, Eric A EA; ,
Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations.
Nature Genetics
Buczkowicz, Pawel P; Hoeman, Christine C; Rakopoulos, Patricia P; Pajovic, Sanja S; Letourneau, Louis L; Dzamba, Misko M; Morrison, Andrew A; Lewis, Peter P; Bouffet, Eric E; Bartels, Ute U; Zuccaro, Jennifer J; Agnihotri, Sameer S; Ryall, Scott S; Barszczyk, Mark M; Chornenkyy, Yevgen Y; Bourgey, Mathieu M; Bourque, Guillaume G; Montpetit, Alexandre A; Cordero, Francisco F; Castelo-Branco, Pedro P; Mangerel, Joshua J; Tabori, Uri U; Ho, King Ching KC; Huang, Annie A; Taylor, Kathryn R KR; Mackay, Alan A; Bendel, Anne E AE; Nazarian, Javad J; Fangusaro, Jason R JR; Karajannis, Matthias A MA; Zagzag, David D; Foreman, Nicholas K NK; Donson, Andrew A; Hegert, Julia V JV; Smith, Amy A; Chan, Jennifer J; Lafay-Cousin, Lucy L; Dunn, Sandra S; Hukin, Juliette J; Dunham, Chris C; Scheinemann, Katrin K; Michaud, Jean J; Zelcer, Shayna S; Ramsay, David D; Cain, Jason J; Brennan, Cameron C; Souweidane, Mark M MM; Jones, Chris C; Allis, C David CD; Brudno, Michael M; Becher, Oren O; Hawkins, Cynthia C
A genome-wide association study of bronchodilator response in Latinos implicates rare variants.
The Journal Of Allergy And Clinical Immunology
Drake, Katherine A KA; Torgerson, Dara G DG; Gignoux, Christopher R CR; Galanter, Joshua M JM; Roth, Lindsey A LA; Huntsman, Scott S; Eng, Celeste C; Oh, Sam S SS; Yee, Sook Wah SW; Lin, Lawrence L; Bustamante, Carlos D CD; Moreno-Estrada, Andrés A; Sandoval, Karla K; Davis, Adam A; Borrell, Luisa N LN; Farber, Harold J HJ; Kumar, Rajesh R; Avila, Pedro C PC; Brigino-Buenaventura, Emerita E; Chapela, Rocio R; Ford, Jean G JG; Lenoir, Michael A MA; Lurmann, Fred F; Meade, Kelley K; Serebrisky, Denise D; Thyne, Shannon S; Rodríguez-Cintrón, William W; Sen, Saunak S; Rodríguez-Santana, José R JR; Hernandez, Ryan D RD; Giacomini, Kathleen M KM; Burchard, Esteban G EG
Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients.
The Journal Of Allergy And Clinical Immunology
Li, Xingnan X; Hawkins, Gregory A GA; Ampleford, Elizabeth J EJ; Moore, Wendy C WC; Li, Huashi H; Hastie, Annette T AT; Howard, Timothy D TD; Boushey, Homer A HA; Busse, William W WW; Calhoun, William J WJ; Castro, Mario M; Erzurum, Serpil C SC; Israel, Elliot E; Lemanske, Robert F RF; Szefler, Stanley J SJ; Wasserman, Stephen I SI; Wenzel, Sally E SE; Peters, Stephen P SP; Meyers, Deborah A DA; Bleecker, Eugene R ER
Publication Date: 2013-08
Variant appearance in text: ADCY9: Ile772Met; rs2230739
A genome-wide association study of bronchodilator response in asthmatics.
The Pharmacogenomics Journal
Duan, Q L QL; Lasky-Su, J J; Himes, B E BE; Qiu, W W; Litonjua, A A AA; Damask, A A; Lazarus, R R; Klanderman, B B; Irvin, C G CG; Peters, S P SP; Hanrahan, J P JP; Lima, J J JJ; Martinez, F D FD; Mauger, D D; Chinchilli, V M VM; Soto-Quiros, M M; Avila, L L; Celedón, J C JC; Lange, C C; Weiss, S T ST; Tantisira, K G KG
The relationship between single nucleotide polymorphisms in 5-HT2A signal transduction-related genes and the response efficacy to selective serotonin reuptake inhibitor treatments in Chinese patients with major depressive disorder.
Host candidate gene polymorphisms and clearance of drug-resistant Plasmodium falciparum parasites.
Malaria Journal
Diakite, Mahamadou M; Achidi, Eric A EA; Achonduh, Olivia O; Craik, Rachel R; Djimde, Abdoulaye A AA; Evehe, Marie-Solange B MS; Green, Angie A; Hubbart, Christina C; Ibrahim, Muntasir M; Jeffreys, Anna A; Khan, Baldip K BK; Kimani, Francis F; Kwiatkowski, Dominic P DP; Mbacham, Wilfred F WF; Jezan, Sabah Omar SO; Ouedraogo, Jean Bosco JB; Rockett, Kirk K; Rowlands, Kate K; Tagelsir, Nawal N; Tekete, Mamadou M MM; Zongo, Issaka I; Ranford-Cartwright, Lisa C LC
Further evidence supporting a role for gs signal transduction in severe malaria pathogenesis.
Plos One
Auburn, Sarah S; Fry, Andrew E AE; Clark, Taane G TG; Campino, Susana S; Diakite, Mahamadou M; Green, Angela A; Richardson, Anna A; Jallow, Muminatou M; Sisay-Joof, Fatou F; Pinder, Margaret M; Molyneux, Malcolm E ME; Taylor, Terrie E TE; Haldar, Kasturi K; Rockett, Kirk A KA; Kwiatkowski, Dominic P DP