Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.
Scientific Reports
Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA
Integrated molecular profiling of patient-derived ovarian cancer models identifies clinically relevant signatures and tumor vulnerabilities.
International Journal Of Cancer
Lupia, Michela M; Melocchi, Valentina V; Bizzaro, Francesca F; Lo Riso, Pietro P; Dama, Elisa E; Baronio, Micol M; Ranghiero, Alberto A; Barberis, Massimo M; Bernard, Loris L; Bertalot, Giovanni G; Giavazzi, Raffaella R; Testa, Giuseppe G; Bianchi, Fabrizio F; Cavallaro, Ugo U
Publication Date: 2022-07-15
Variant appearance in text: SMG6: Lys294Gln; rs216195
Genome-wide analysis of mitochondrial DNA copy number reveals loci implicated in nucleotide metabolism, platelet activation, and megakaryocyte proliferation.
Human Genetics
Longchamps, R J RJ; Yang, S Y SY; Castellani, C A CA; Shi, W W; Lane, J J; Grove, M L ML; Bartz, T M TM; Sarnowski, C C; Liu, C C; Burrows, K K; Guyatt, A L AL; Gaunt, T R TR; Kacprowski, T T; Yang, J J; De Jager, P L PL; Yu, L L; Bergman, A A; Xia, R R; Fornage, M M; Feitosa, M F MF; Wojczynski, M K MK; Kraja, A T AT; Province, M A MA; Amin, N N; Rivadeneira, F F; Tiemeier, H H; Uitterlinden, A G AG; Broer, L L; Van Meurs, J B J JBJ; Van Duijn, C M CM; Raffield, L M LM; Lange, L L; Rich, S S SS; Lemaitre, R N RN; Goodarzi, M O MO; Sitlani, C M CM; Mak, A C Y ACY; Bennett, D A DA; Rodriguez, S S; Murabito, J M JM; Lunetta, K L KL; Sotoodehnia, N N; Atzmon, G G; Ye, K K; Barzilai, N N; Brody, J A JA; Psaty, B M BM; Taylor, K D KD; Rotter, J I JI; Boerwinkle, E E; Pankratz, N N; Arking, D E DE
Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.
Plos One
Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S
Publication Date: 2021
Variant appearance in text: SMG6: 880A>C; K294Q; rs216195
Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells.
Npj Systems Biology And Applications
Immanuel, Selva Rupa Christinal SRC; Ghanate, Avinash D AD; Parmar, Dharmeshkumar S DS; Yadav, Ritu R; Uthup, Riya R; Panchagnula, Venkateswarlu V; Raghunathan, Anu A
Publication Date: 2021-01-08
Variant appearance in text: SMG6: 880A>C; K294Q; rs216195
Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities.
Nature Communications
Nichols, Caitlin A CA; Gibson, William J WJ; Brown, Meredith S MS; Kosmicki, Jack A JA; Busanovich, John P JP; Wei, Hope H; Urbanski, Laura M LM; Curimjee, Naomi N; Berger, Ashton C AC; Gao, Galen F GF; Cherniack, Andrew D AD; Dhe-Paganon, Sirano S; Paolella, Brenton R BR; Beroukhim, Rameen R
Publication Date: 2020-05-20
Variant appearance in text: SMG6: 880A>C; Lys294Gln; rs216195
The role of myoglobin in epithelial cancers: Insights from transcriptomics.
International Journal Of Molecular Medicine
Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.
Cell Death & Disease
Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D
Publication Date: 2019-02-27
Variant appearance in text: SMG6: 880A>C; rs216195
Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.
Molecular Psychiatry
Erzurumluoglu, A Mesut AM; Liu, Mengzhen M; Jackson, Victoria E VE; Barnes, Daniel R DR; Datta, Gargi G; Melbourne, Carl A CA; Young, Robin R; Batini, Chiara C; Surendran, Praveen P; Jiang, Tao T; Adnan, Sheikh Daud SD; Afaq, Saima S; Agrawal, Arpana A; Altmaier, Elisabeth E; Antoniou, Antonis C AC; Asselbergs, Folkert W FW; Baumbach, Clemens C; Bierut, Laura L; Bertelsen, Sarah S; Boehnke, Michael M; Bots, Michiel L ML; Brazel, David M DM; Chambers, John C JC; Chang-Claude, Jenny J; Chen, Chu C; Corley, Janie J; Chou, Yi-Ling YL; David, Sean P SP; de Boer, Rudolf A RA; de Leeuw, Christiaan A CA; Dennis, Joe G JG; Dominiczak, Anna F AF; Dunning, Alison M AM; Easton, Douglas F DF; Eaton, Charles C; Elliott, Paul P; Evangelou, Evangelos E; Faul, Jessica D JD; Foroud, Tatiana T; Goate, Alison A; Gong, Jian J; Grabe, Hans J HJ; Haessler, Jeff J; Haiman, Christopher C; Hallmans, Göran G; Hammerschlag, Anke R AR; Harris, Sarah E SE; Hattersley, Andrew A; Heath, Andrew A; Hsu, Chris C; Iacono, William G WG; Kanoni, Stavroula S; Kapoor, Manav M; Kaprio, Jaakko J; Kardia, Sharon L SL; Karpe, Fredrik F; Kontto, Jukka J; Kooner, Jaspal S JS; Kooperberg, Charles C; Kuulasmaa, Kari K; Laakso, Markku M; Lai, Dongbing D; Langenberg, Claudia C; Le, Nhung N; Lettre, Guillaume G; Loukola, Anu A; Luan, Jian'an J; Madden, Pamela A F PAF; Mangino, Massimo M; Marioni, Riccardo E RE; Marouli, Eirini E; Marten, Jonathan J; Martin, Nicholas G NG; McGue, Matt M; Michailidou, Kyriaki K; Mihailov, Evelin E; Moayyeri, Alireza A; Moitry, Marie M; Müller-Nurasyid, Martina M; Naheed, Aliya A; Nauck, Matthias M; Neville, Matthew J MJ; Nielsen, Sune Fallgaard SF; North, Kari K; Perola, Markus M; Pharoah, Paul D P PDP; Pistis, Giorgio G; Polderman, Tinca J TJ; Posthuma, Danielle D; Poulter, Neil N; Qaiser, Beenish B; Rasheed, Asif A; Reiner, Alex A; Renström, Frida F; Rice, John J; Rohde, Rebecca R; Rolandsson, Olov O; Samani, Nilesh J NJ; Samuel, Maria M; Schlessinger, David D; Scholte, Steven H SH; Scott, Robert A RA; Sever, Peter P; Shao, Yaming Y; Shrine, Nick N; Smith, Jennifer A JA; Starr, John M JM; Stirrups, Kathleen K; Stram, Danielle D; Stringham, Heather M HM; Tachmazidou, Ioanna I; Tardif, Jean-Claude JC; Thompson, Deborah J DJ; Tindle, Hilary A HA; Tragante, Vinicius V; Trompet, Stella S; Turcot, Valerie V; Tyrrell, Jessica J; Vaartjes, Ilonca I; van der Leij, Andries R AR; van der Meer, Peter P; Varga, Tibor V TV; Verweij, Niek N; Völzke, Henry H; Wareham, Nicholas J NJ; Warren, Helen R HR; Weir, David R DR; Weiss, Stefan S; Wetherill, Leah L; Yaghootkar, Hanieh H; Yavas, Ersin E; Jiang, Yu Y; Chen, Fang F; Zhan, Xiaowei X; Zhang, Weihua W; Zhao, Wei W; Zhao, Wei W; Zhou, Kaixin K; Amouyel, Philippe P; Blankenberg, Stefan S; Caulfield, Mark J MJ; Chowdhury, Rajiv R; Cucca, Francesco F; Deary, Ian J IJ; Deloukas, Panos P; Di Angelantonio, Emanuele E; Ferrario, Marco M; Ferrières, Jean J; Franks, Paul W PW; Frayling, Tim M TM; Frossard, Philippe P; Hall, Ian P IP; Hayward, Caroline C; Jansson, Jan-Håkan JH; Jukema, J Wouter JW; Kee, Frank F; Männistö, Satu S; Metspalu, Andres A; Munroe, Patricia B PB; Nordestgaard, Børge Grønne BG; Palmer, Colin N A CNA; Salomaa, Veikko V; Sattar, Naveed N; Spector, Timothy T; Strachan, David Peter DP; , ; van der Harst, Pim P; Zeggini, Eleftheria E; Saleheen, Danish D; Butterworth, Adam S AS; Wain, Louise V LV; Abecasis, Goncalo R GR; Danesh, John J; Tobin, Martin D MD; Vrieze, Scott S; Liu, Dajiang J DJ; Howson, Joanna M M JMM
X-linked ADGRG2 mutation and obstructive azoospermia in a large Pakistani family.
Scientific Reports
Khan, Muhammad Jaseem MJ; Pollock, Nijole N; Jiang, Huaiyang H; Castro, Carlos C; Nazli, Rubina R; Ahmed, Jawad J; Basit, Sulman S; Rajkovic, Aleksandar A; Yatsenko, Alexander N AN
Three-dimensional modelling identifies novel genetic dependencies associated with breast cancer progression in the isogenic MCF10 model.
The Journal Of Pathology
Maguire, Sarah L SL; Peck, Barrie B; Wai, Patty T PT; Campbell, James J; Barker, Holly H; Gulati, Aditi A; Daley, Frances F; Vyse, Simon S; Huang, Paul P; Lord, Christopher J CJ; Farnie, Gillian G; Brennan, Keith K; Natrajan, Rachael R
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK