Publications:

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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.

Nature Communications

Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA

Publication Date: 2023-04-03

Variant appearance in text: ERBB2: P1170A

PubMed Link: 37012232

Variant Present in the following documents:

• 41467_2023_37547_MOESM12_ESM.xlsx, sheet 3
• 41467_2023_37547_MOESM12_ESM.xlsx, sheet 2

View BVdb publication page

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Germline-mediated immunoediting sculpts breast cancer subtypes and metastatic proclivity.

Biorxiv : The Preprint Server For Biology

Houlahan, Kathleen E KE; Khan, Aziz A; Greenwald, Noah F NF; West, Robert B RB; Angelo, Michael M; Curtis, Christina C

Publication Date: 2023-03-16

Variant appearance in text: rs1058808

PubMed Link: 36993286

Variant Present in the following documents:

• Main text
• nihpp-2023.03.15.532870v1.pdf

View BVdb publication page

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Comprehensive proteogenomic characterization of early duodenal cancer reveals the carcinogenesis tracks of different subtypes.

Nature Communications

Li, Lingling L; Jiang, Dongxian D; Liu, Hui H; Guo, Chunmei C; Zhao, Rui R; Zhang, Qiao Q; Xu, Chen C; Qin, Zhaoyu Z; Feng, Jinwen J; Liu, Yang Y; Wang, Haixing H; Chen, Weijie W; Zhang, Xue X; Li, Bin B; Bai, Lin L; Tian, Sha S; Tan, Subei S; Yu, Zixiang Z; Chen, Lingli L; Huang, Jie J; Zhao, Jian-Yuan JY; Hou, Yingyong Y; Ding, Chen C

Publication Date: 2023-03-29

Variant appearance in text: ERBB2: P1170A; rs1058808

PubMed Link: 36991000

Variant Present in the following documents:

• 41467_2023_37221_MOESM5_ESM.xlsx, sheet 3

View BVdb publication page

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Oligo-Metastatic Cancers: Putative Biomarkers, Emerging Challenges and New Perspectives.

Cancers

Ottaiano, Alessandro A; Santorsola, Mariachiara M; Circelli, Luisa L; Trotta, Anna Maria AM; Izzo, Francesco F; Perri, Francesco F; Cascella, Marco M; Sabbatino, Francesco F; Granata, Vincenza V; Correra, Marco M; Tarotto, Luca L; Stilo, Salvatore S; Fiore, Francesco F; Martucci, Nicola N; Rocca, Antonello La A; Picone, Carmine C; Muto, Paolo P; Borzillo, Valentina V; Belli, Andrea A; Patrone, Renato R; Mercadante, Edoardo E; Tatangelo, Fabiana F; Ferrara, Gerardo G; Di Mauro, Annabella A; Scognamiglio, Giosué G; Berretta, Massimiliano M; Capuozzo, Maurizio M; Lombardi, Angela A; Galon, Jérôme J; Gualillo, Oreste O; Pace, Ugo U; Delrio, Paolo P; Savarese, Giovanni G; Scala, Stefania S; Nasti, Guglielmo G; Caraglia, Michele M

Publication Date: 2023-03-17

Variant appearance in text: ERBB2: Pro1170Ala

PubMed Link: 36980713

Variant Present in the following documents:

• Main text
• cancers-15-01827.pdf

View BVdb publication page

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Bi-allelic mutation in SEC16B alters collagen trafficking and increases ER stress.

Embo Molecular Medicine

El-Gazzar, Ahmed A; Voraberger, Barbara B; Rauch, Frank F; Mairhofer, Mario M; Schmidt, Katy K; Guillemyn, Brecht B; Mitulović, Goran G; Reiterer, Veronika V; Haun, Margot M; Mayr, Michaela M MM; Mayr, Johannes A JA; Kimeswenger, Susanne S; Drews, Oliver O; Saraff, Vrinda V; Shaw, Nick N; Fratzl-Zelman, Nadja N; Symoens, Sofie S; Farhan, Hesso H; Högler, Wolfgang W

Publication Date: 2023-03-14

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala

PubMed Link: 36916446

Variant Present in the following documents:

• EMMM-15-e16834-s012.xlsx, sheet 1

View BVdb publication page

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Integrative proteomic characterization of adenocarcinoma of esophagogastric junction.

Nature Communications

Li, Shengli S; Yuan, Li L; Xu, Zhi-Yuan ZY; Xu, Jing-Li JL; Chen, Gui-Ping GP; Guan, Xiaoqing X; Pan, Guang-Zhao GZ; Hu, Can C; Dong, Jinyun J; Du, Yi-An YA; Yang, Li-Tao LT; Ni, Mao-Wei MW; Jiang, Rui-Bin RB; Zhu, Xiu X; Lv, Hang H; Xu, Han-Dong HD; Zhang, Sheng-Jie SJ; Qin, Jiang-Jiang JJ; Cheng, Xiang-Dong XD

Publication Date: 2023-02-11

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 36774361

Variant Present in the following documents:

• 41467_2023_36462_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

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Exome variants associated with asthma and allergy.

Scientific Reports

Wjst, Matthias M

Publication Date: 2022-12-05

Variant appearance in text: ERBB2: 3508C>G

PubMed Link: 36470944

Variant Present in the following documents:

• 41598_2022_24960_MOESM1_ESM.pdf

View BVdb publication page

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Genomic characterization of intracranial teratomas using whole genome sequencing.

Frontiers In Oncology

Zhang, Chao C; Zhou, Xiaoyu X; Huang, Xiang X; Ding, Xinghua X; Wang, Yang Y; Zhang, Rong R

Publication Date: 2022

Variant appearance in text: ERBB2: P1170A

PubMed Link: 36457486

Variant Present in the following documents:

• DataSheet_1.xlsx, sheet 2
• DataSheet_1.xlsx, sheet 8

View BVdb publication page

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Pharmacogenomics in drug-induced cardiotoxicity: Current status and the future.

Frontiers In Cardiovascular Medicine

Li, Mo-Yun MY; Peng, Li-Ming LM; Chen, Xiao-Ping XP

Publication Date: 2022

Variant appearance in text: HER-2: Pro1170Ala; rs1058808

PubMed Link: 36312261

Variant Present in the following documents:

• Main text
• fcvm-09-966261.pdf
• Table_1.pdf

View BVdb publication page

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Beneficial effects of mifepristone treatment in breast cancer patients selected by the progesterone receptor isoform ratio: Results from the MIPRA trial.

Clinical Cancer Research : An Official Journal Of The American Association For Cancer Research

Elía, Andrés A; Saldain, Leo L; Vanzulli, Silvia I SI; Helguero, Luisa A LA; Lamb, Caroline A CA; Fabris, Victoria V; Pataccini, Gabriela G; Martínez-Vazquez, Paula P; Burruchaga, Javier J; Caillet-Bois, Ines I; Spengler, Eunice E; Acosta Haab, Gabriela G; Liguori, Marcos M; Castets, Alejandra A; Lovisi, Silvia S; Abascal, María F MF; Novaro, Virginia V; Sánchez, Jana J; Muñoz, Javier J; Belizán, Jose M JM; Abba, Martín C MC; Gass, Hugo H; Rojas, Paola P; Lanari, Claudia C

Publication Date: 2022-10-21

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala

PubMed Link: 36269797

Variant Present in the following documents:

• ccr-22-2060_supplementary_table_s5_suppts5.xlsx, sheet 1

View BVdb publication page

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Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports

Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-10-14

Variant appearance in text: rs1058808

PubMed Link: 36241656

Variant Present in the following documents:

• 41598_2022_20939_MOESM14_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM15_ESM.xlsx, sheet 2

View BVdb publication page

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Case report: A persistently expanded T cell response in an exceptional responder to radiation and atezolizumab for metastatic non-small cell lung cancer.

Frontiers In Immunology

Coffey, David G DG; Xu, Yuexin Y; Towlerton, Andrea M H AMH; Kowanetz, Marcin M; Hegde, Priti P; Darwish, Martine M; Yadav, Mahesh M; Blanchette, Craig C; Ruppert, Shannon M SM; Bertino, Sarah S; Xu, Qikai Q; Ferretti, Andrew A; Weinheimer, Adam A; Hellmann, Matthew M; Qin, Angel A; Thomas, Dafydd D; Warren, Edus H EH; Ramnath, Nithya N

Publication Date: 2022

Variant appearance in text: ERBB2: P1170A

PubMed Link: 36159875

Variant Present in the following documents:

• Table_2.xlsx, sheet 1

View BVdb publication page

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A genomic deletion encompassing CRYBB2-CRYBB2P1 is responsible for autosomal recessive congenital cataracts.

Human Genome Variation

Irum, Bushra B; Kabir, Firoz F; Shoshany, Nadav N; Khan, Shahid Y SY; Rauf, Bushra B; Naeem, Muhammad Asif MA; Qaiser, Tanveer A TA; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-09-08

Variant appearance in text: rs1058808

PubMed Link: 36075891

Variant Present in the following documents:

• 41439_2022_208_MOESM4_ESM.xlsx, sheet 2
• 41439_2022_208_MOESM3_ESM.xlsx, sheet 2
• 41439_2022_208_MOESM5_ESM.xlsx, sheet 2

View BVdb publication page

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Case Report: Primary Leptomeningeal Medulloblastoma in a Child: Clinical Case Report and Literature Review.

Frontiers In Pediatrics

Morgacheva, Daria D; Daks, Alexandra A; Smirnova, Anna A; Kim, Aleksandr A; Ryzhkova, Daria D; Mitrofanova, Lubov L; Staliarova, Alena A; Omelina, Evgeniya E; Pindyurin, Alexey A; Fedorova, Olga O; Shuvalov, Oleg O; Petukhov, Alexey A; Dinikina, Yulia Y

Publication Date: 2022

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala; rs1058808

PubMed Link: 35899134

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

View BVdb publication page

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Construction and validation of an immunoediting-based optimized neoantigen load (ioTNL) model to predict the response and prognosis of immune checkpoint therapy in various cancers.

Aging

Su, Xiaofan X; Jin, Haoxuan H; Wang, Jiaqian J; Lu, Huiping H; Gu, Tiantian T; Gao, Zhibo Z; Li, Manxiang M

Publication Date: 2022-05-25

Variant appearance in text: ERBB2: 3508C>G; P1170A

PubMed Link: 35613927

Variant Present in the following documents:

• aging-14-204101-s004.xlsx, sheet 1

View BVdb publication page

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Bacillus Calmette-Guérin Treatment Changes the Tumor Microenvironment of Non-Muscle-Invasive Bladder Cancer.

Frontiers In Oncology

Su, Fei F; Liu, Ming M; Zhang, Wei W; Tang, Min M; Zhang, Jinsong J; Li, Hexin H; Zou, Lihui L; Zhang, Rui R; Liu, Yudong Y; Li, Lin L; Ma, Jie J; Zhang, Yaqun Y; Chen, Meng M; Xiao, Fei F

Publication Date: 2022

Variant appearance in text: ERBB2: P1170A

PubMed Link: 35311085

Variant Present in the following documents:

• Table_1.xlsx, sheet 4

View BVdb publication page

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Novel molecular biomarkers of cancer therapy-induced cardiotoxicity in adult population: a scoping review.

Esc Heart Failure

Cartas-Espinel, Irene I; Telechea-Fernández, Marcelino M; Manterola Delgado, Carlos C; Ávila Barrera, Andrés A; Saavedra Cuevas, Nicolás N; Riffo-Campos, Angela L AL

Publication Date: 2022-06

Variant appearance in text: HER2: Pro1170Ala; rs1058808

PubMed Link: 35261178

Variant Present in the following documents:

• Main text
• EHF2-9-1651.pdf
• EHF2-9-1651-s001.xls, sheet 7

View BVdb publication page

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Response prediction in patients with gastric and esophagogastric adenocarcinoma under neoadjuvant chemotherapy using targeted gene expression analysis and next-generation sequencing in pre-therapeutic biopsies.

Journal Of Cancer Research And Clinical Oncology

Kleo, Karsten K; Jovanovic, Vladimir M VM; Arndold, Alexander A; Lehmann, Annika A; Lammert, Hedwig H; Berg, Erika E; Harloff, Hannah H; Treese, Christoph C; Hummel, Michael M; Daum, Severin S

Publication Date: 2022-03-05

Variant appearance in text: ERBB2: 3508C>G; rs1058808

PubMed Link: 35246724

Variant Present in the following documents:

• 432_2022_3944_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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SYNE1 Exonic Variant rs9479297 Contributes to Concurrent Hepatocellular and Transitional Cell Carcinoma Double Primary Cancer.

Biomedicines

Chu, Yu-De YD; Kee, Kwong-Ming KM; Lin, Wey-Ran WR; Lai, Ming-Wei MW; Lu, Sheng-Nan SN; Chung, Wen-Hung WH; Pang, See-Tong ST; Yeh, Chau-Ting CT

Publication Date: 2021-12-02

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 34944636

Variant Present in the following documents:

• Main text
• biomedicines-09-01819.pdf

View BVdb publication page

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SYNE1 Exonic Variant rs9479297 Contributes to Concurrent Hepatocellular and Transitional Cell Carcinoma Double Primary Cancer.

Biomedicines

Chu, Yu-De YD; Kee, Kwong-Ming KM; Lin, Wey-Ran WR; Lai, Ming-Wei MW; Lu, Sheng-Nan SN; Chung, Wen-Hung WH; Pang, See-Tong ST; Yeh, Chau-Ting CT

Publication Date: 2021-12-02

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 34944636

Variant Present in the following documents:

• Main text
• biomedicines-09-01819.pdf

View BVdb publication page

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Multifocal Organoid Capturing of Colon Cancer Reveals Pervasive Intratumoral Heterogenous Drug Responses.

Advanced Science (Weinheim, Baden-Wurttemberg, Germany)

Kim, Soon-Chan SC; Park, Ji Won JW; Seo, Ha-Young HY; Kim, Minjung M; Park, Jae-Hyeon JH; Kim, Ga-Hye GH; Lee, Ja Oh JO; Shin, Young-Kyoung YK; Bae, Jeong Mo JM; Koo, Bon-Kyoung BK; Jeong, Seung-Yong SY; Ku, Ja-Lok JL

Publication Date: 2022-02

Variant appearance in text: ERBB2: 3508C>G; P1170A

PubMed Link: 34918496

Variant Present in the following documents:

• ADVS-9-2103360-s007.xlsx, sheet 3

View BVdb publication page

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Combined multimodal ctDNA analysis and radiological imaging for tumor surveillance in Non-small cell lung cancer.

Translational Oncology

Metzenmacher, Martin M; Hegedüs, Balazs B; Forster, Jan J; Schramm, Alexander A; Horn, Peter A PA; Klein, Christoph A CA; Bielefeld, Nicola N; Ploenes, Till T; Aigner, Clemens C; Theegarten, Dirk D; Schildhaus, Hans-Ulrich HU; Siveke, Jens T JT; Schuler, Martin M; Lueong, Smiths S SS

Publication Date: 2022-01

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala; rs1058808

PubMed Link: 34800919

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

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Combined multimodal ctDNA analysis and radiological imaging for tumor surveillance in Non-small cell lung cancer.

Translational Oncology

Metzenmacher, Martin M; Hegedüs, Balazs B; Forster, Jan J; Schramm, Alexander A; Horn, Peter A PA; Klein, Christoph A CA; Bielefeld, Nicola N; Ploenes, Till T; Aigner, Clemens C; Theegarten, Dirk D; Schildhaus, Hans-Ulrich HU; Siveke, Jens T JT; Schuler, Martin M; Lueong, Smiths S SS

Publication Date: 2021-11-17

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala; rs1058808

PubMed Link: 34800919

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

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Case Report: Osimertinib Followed by Osimertinib Plus Bevacizumab, Personalized Treatment Strategy for a Lung Cancer Patient With a Novel EGFR Exon 20 Insertion D770_N771insGT and Multiple Brain Metastases.

Frontiers In Oncology

Zhi, Xiaoyu X; Luo, Jiancheng J; Li, Weiwei W; Wang, Jinliang J; Wang, Yuying Y; Cai, Yi Y; Yan, Xiang X

Publication Date: 2021

Variant appearance in text: ERBB2: P1170A

PubMed Link: 34760695

Variant Present in the following documents:

• Main text

View BVdb publication page

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Association of HER1 and HER2 Gene Variants in the Predisposition of Colorectal Cancer.

Journal Of Oncology

Alanazi, Ibrahim O IO; Shaik, Jilani Purusottapatnam JP; Parine, Narasimha Reddy NR; Azzam, Nahla A NA; Alharbi, Othman O; Hawsawi, Yousef M YM; Oyouni, Atif Abdulwahab A AAA; Al-Amer, Osama M OM; Alzahrani, Faisal F; Almadi, Majid A MA; Aljebreen, Abdulrahman M AM; Alanazi, Mohammad Saud MS; Khan, Zahid Z

Publication Date: 2021

Variant appearance in text: HER2: P1170A; rs1058808

PubMed Link: 34721579

Variant Present in the following documents:

• Main text
• JO2021-6180337.pdf

View BVdb publication page

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Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition.

Molecular & Cellular Proteomics : Mcp

Schmitt, Marisa M; Sinnberg, Tobias T; Bratl, Katrin K; Zittlau, Katharina K; Garbe, Claus C; Macek, Boris B; Nalpas, Nicolas C NC

Publication Date: 2021

Variant appearance in text: ERBB2: P1170A; rs1058808

PubMed Link: 34673281

Variant Present in the following documents:

• mmc2.xlsx, sheet 11
• mmc2.xlsx, sheet 3
• mmc2.xlsx, sheet 6
• mmc2.xlsx, sheet 9

View BVdb publication page

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Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition.

Molecular & Cellular Proteomics : Mcp

Schmitt, Marisa M; Sinnberg, Tobias T; Bratl, Katrin K; Zittlau, Katharina K; Garbe, Claus C; Macek, Boris B; Nalpas, Nicolas C NC

Publication Date: 2021-10-19

Variant appearance in text: ERBB2: P1170A; rs1058808

PubMed Link: 34673281

Variant Present in the following documents:

• mmc2.xlsx, sheet 9
• mmc2.xlsx, sheet 6
• mmc2.xlsx, sheet 3
• mmc2.xlsx, sheet 11

View BVdb publication page

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Establishment and characterization of novel highly aggressive HER2‑positive and triple‑negative breast cancer cell lines.

Oncology Reports

Thongchot, Suyanee S; Jamjuntra, Pranisa P; Prasopsiri, Jaturawitt J; Thuwajit, Peti P; Sawasdee, Nunghathai N; Poungvarin, Naravat N; Warnnissorn, Malee M; Sa-Nguanraksa, Doonyapat D; O-Charoenrat, Pornchai P; Yenchitsomanus, Pa-Thai PT; Thuwajit, Chanitra C

Publication Date: 2021-12

Variant appearance in text: ERBB2: 3508C>G

PubMed Link: 34651665

Variant Present in the following documents:

• Main text

View BVdb publication page

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Clinical Utility of Liquid Biopsy-Based Actionable Mutations Detected via ddPCR.

Biomedicines

Palacín-Aliana, Irina I; García-Romero, Noemí N; Asensi-Puig, Adrià A; Carrión-Navarro, Josefa J; González-Rumayor, Víctor V; Ayuso-Sacido, Ángel Á

Publication Date: 2021-07-28

Variant appearance in text: ERBB2: P1170A

PubMed Link: 34440110

Variant Present in the following documents:

• Main text
• biomedicines-09-00906.pdf

View BVdb publication page

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Circulating tumor DNA sequencing in colorectal cancer patients treated with first-line chemotherapy with anti-EGFR.

Scientific Reports

Lim, Yoojoo Y; Kim, Sheehyun S; Kang, Jun-Kyu JK; Kim, Hwang-Phill HP; Jang, Hoon H; Han, Hyojun H; Kim, Hyoki H; Kim, Min Jung MJ; Lee, Kyung-Hun KH; Ryoo, Seung-Bum SB; Park, Ji Won JW; Jeong, Seung-Yong SY; Park, Kyu Joo KJ; Kang, Gyeong Hoon GH; Han, Sae-Won SW; Kim, Tae-You TY

Publication Date: 2021-08-11

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala; rs1058808

PubMed Link: 34381078

Variant Present in the following documents:

• 41598_2021_95345_MOESM5_ESM.xlsx, sheet 1
• 41598_2021_95345_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Prioritization of candidate causal genes for asthma in susceptibility loci derived from UK Biobank.

Communications Biology

Valette, Kim K; Li, Zhonglin Z; Bon-Baret, Valentin V; Chignon, Arnaud A; Bérubé, Jean-Christophe JC; Eslami, Aida A; Lamothe, Jennifer J; Gaudreault, Nathalie N; Joubert, Philippe P; Obeidat, Ma'en M; van den Berge, Maarten M; Timens, Wim W; Sin, Don D DD; Nickle, David C DC; Hao, Ke K; Labbé, Catherine C; Godbout, Krystelle K; Côté, Andréanne A; Laviolette, Michel M; Boulet, Louis-Philippe LP; Mathieu, Patrick P; Thériault, Sébastien S; Bossé, Yohan Y

Publication Date: 2021-06-08

Variant appearance in text: rs1058808

PubMed Link: 34103634

Variant Present in the following documents:

• Main text
• 42003_2021_Article_2227.pdf

View BVdb publication page

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First case report of a NUP98-PMX1 rearrangement in de novo acute myeloid leukemia and literature review.

Bmc Medical Genomics

Fu, Weijia W; Huang, Aijie A; Cheng, Hui H; Luo, Yanrong Y; Gao, Lei L; Tang, Gusheng G; Yang, Jianmin J; Wang, Jianmin J; Ni, Xiong X

Publication Date: 2021-05-17

Variant appearance in text: ERBB2: P1170A; rs1058808

PubMed Link: 34001105

Variant Present in the following documents:

• 12920_2021_979_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Human Pluripotent Stem Cells for Modeling of Anticancer Therapy-Induced Cardiotoxicity and Cardioprotective Drug Discovery.

Frontiers In Pharmacology

Keung, Wendy W; Cheung, Yiu-Fai YF

Publication Date: 2021

Variant appearance in text: rs1058808

PubMed Link: 33953683

Variant Present in the following documents:

• Main text

View BVdb publication page

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Microsecond-timescale MD simulation of EGFR minor mutation predicts the structural flexibility of EGFR kinase core that reflects EGFR inhibitor sensitivity.

Npj Precision Oncology

Yoshizawa, Takahiro T; Uchibori, Ken K; Araki, Mitsugu M; Matsumoto, Shigeyuki S; Ma, Biao B; Kanada, Ryo R; Seto, Yosuke Y; Oh-Hara, Tomoko T; Koike, Sumie S; Ariyasu, Ryo R; Kitazono, Satoru S; Ninomiya, Hironori H; Takeuchi, Kengo K; Yanagitani, Noriko N; Takagi, Satoshi S; Kishi, Kazuma K; Fujita, Naoya N; Okuno, Yasushi Y; Nishio, Makoto M; Katayama, Ryohei R

Publication Date: 2021-04-16

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 33863983

Variant Present in the following documents:

• 41698_2021_170_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast.

Communications Biology

Nagasawa, Satoi S; Kuze, Yuta Y; Maeda, Ichiro I; Kojima, Yasuyuki Y; Motoyoshi, Ai A; Onishi, Tatsuya T; Iwatani, Tsuguo T; Yokoe, Takamichi T; Koike, Junki J; Chosokabe, Motohiro M; Kubota, Manabu M; Seino, Hibiki H; Suzuki, Ayako A; Seki, Masahide M; Tsuchihara, Katsuya K; Inoue, Eisuke E; Tsugawa, Koichiro K; Ohta, Tomohiko T; Suzuki, Yutaka Y

Publication Date: 2021-04-01

Variant appearance in text: ERBB2: P1170A; rs1058808

PubMed Link: 33795819

Variant Present in the following documents:

• 42003_2021_1959_MOESM10_ESM.xlsx, sheet 1

View BVdb publication page

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Disseminated Talaromyces marneffei Infection in a Non-HIV Infant With a Homozygous Private Variant of RELB.

Frontiers In Cellular And Infection Microbiology

Ding, Xiaofang X; Huang, Han H; Zhong, Lili L; Chen, Min M; Peng, Fang F; Zhang, Bing B; Cui, Xinyu X; Yang, Xiu-An XA

Publication Date: 2021

Variant appearance in text: rs1058808

PubMed Link: 33791233

Variant Present in the following documents:

• Table_2.xlsx, sheet 1

View BVdb publication page

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Prioritization of candidate genes for a South African family with Parkinson's disease using in-silico tools.

Plos One

Sebate, Boiketlo B; Cuttler, Katelyn K; Cloete, Ruben R; Britz, Marcell M; Christoffels, Alan A; Williams, Monique M; Carr, Jonathan J; Bardien, Soraya S

Publication Date: 2021

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 33770142

Variant Present in the following documents:

• pone.0249324.s003.xlsx, sheet 3
• pone.0249324.s003.xlsx, sheet 1

View BVdb publication page

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Patient-derived non-small cell lung cancer xenograft mirrors complex tumor heterogeneity.

Cancer Biology & Medicine

Chen, Xuanming X; Shen, Cheng C; Wei, Zhe Z; Zhang, Rui R; Wang, Yongsheng Y; Jiang, Lili L; Chen, Ke K; Qiu, Shuang S; Zhang, Yuanli Y; Zhang, Ting T; Chen, Bin B; Xu, Yanjun Y; Feng, Qiyi Q; Huang, Jinxing J; Zhong, Zhihui Z; Li, Hongxia H; Che, Guowei G; Xiao, Kai K

Publication Date: 2021-02-15

Variant appearance in text: ERBB2: P1170A

PubMed Link: 33628593

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genetic Influences in Breast Cancer Drug Resistance.

Breast Cancer (Dove Medical Press)

Daniyal, Adhitiya A; Santoso, Ivana I; Gunawan, Nadira Hasna Putri NHP; Barliana, Melisa Intan MI; Abdulah, Rizky R

Publication Date: 2021

Variant appearance in text: HER2: P1170A

PubMed Link: 33603458

Variant Present in the following documents:

• Main text
• bctt-13-59.pdf

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A pediatric brain tumor atlas of genes deregulated by somatic genomic rearrangement.

Nature Communications

Zhang, Yiqun Y; Chen, Fengju F; Donehower, Lawrence A LA; Scheurer, Michael E ME; Creighton, Chad J CJ

Publication Date: 2021-02-10

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 33568653

Variant Present in the following documents:

• 41467_2021_21081_MOESM8_ESM.xlsx, sheet 3

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Whole-exome sequencing identified a novel heterozygous mutation of SALL1 and a new homozygous mutation of PTPRQ in a Chinese family with Townes-Brocks syndrome and hearing loss.

Bmc Medical Genomics

Yang, Guangxian G; Yin, Yi Y; Tan, Zhiping Z; Liu, Jian J; Deng, Xicheng X; Yang, Yifeng Y

Publication Date: 2021-01-21

Variant appearance in text: ERBB2: 3508C>G; Pro1170Ala; rs1058808

PubMed Link: 33478437

Variant Present in the following documents:

• 12920_2021_871_MOESM2_ESM.xls, sheet 1

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Patient-derived organoids in cellulosic sponge model chemotherapy response of metastatic colorectal cancer.

Clinical And Translational Medicine

Xu, Yanjie Y; Chen, Jianjun J; Huang, Yizhou Y; Luo, Yang Y; Hsieh, An-Chih AC; Chen, Jianyi J; Li, Han H; Wei, Xunbin X; Gao, Wei-Qiang WQ; Zhong, Ming M; Zhang, Yan Y

Publication Date: 2021-01

Variant appearance in text: ERBB2: P1170A; rs1058808

PubMed Link: 33463056

Variant Present in the following documents:

• CTM2-11-e285-s003.xlsx, sheet 18
• CTM2-11-e285-s003.xlsx, sheet 9
• CTM2-11-e285-s003.xlsx, sheet 22
• CTM2-11-e285-s003.xlsx, sheet 19
• CTM2-11-e285-s003.xlsx, sheet 10

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Integrated genetic and metabolic landscapes predict vulnerabilities of temozolomide resistant glioblastoma cells.

Npj Systems Biology And Applications

Immanuel, Selva Rupa Christinal SRC; Ghanate, Avinash D AD; Parmar, Dharmeshkumar S DS; Yadav, Ritu R; Uthup, Riya R; Panchagnula, Venkateswarlu V; Raghunathan, Anu A

Publication Date: 2021-01-08

Variant appearance in text: ERBB2: 3508C>G; P1170A

PubMed Link: 33420045

Variant Present in the following documents:

• 41540_2020_161_MOESM3_ESM.xlsx, sheet 3
• 41540_2020_161_MOESM3_ESM.xlsx, sheet 2
• 41540_2020_161_MOESM3_ESM.xlsx, sheet 4

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Molecular genomic features associated with in vitro response of the NCI-60 cancer cell line panel to natural products.

Molecular Oncology

Krushkal, Julia J; Negi, Simarjeet S; Yee, Laura M LM; Evans, Jason R JR; Grkovic, Tanja T; Palmisano, Alida A; Fang, Jianwen J; Sankaran, Hari H; McShane, Lisa M LM; Zhao, Yingdong Y; O'Keefe, Barry R BR

Publication Date: 2021-02

Variant appearance in text: ERBB2: P1170A

PubMed Link: 33169510

Variant Present in the following documents:

• MOL2-15-381-s009.xlsx, sheet 1

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Possible Susceptibility Genes for Intervention against Chemotherapy-Induced Cardiotoxicity.

Oxidative Medicine And Cellular Longevity

Yang, Xinyu X; Li, Guoping G; Yang, Tao T; Guan, Manke M; An, Na N; Yang, Fan F; Dai, Qianqian Q; Zhong, Changming C; Luo, Changyong C; Gao, Yonghong Y; Das, Saumya S; Xing, Yanwei Y; Shang, Hongcai H

Publication Date: 2020

Variant appearance in text: rs1058808

PubMed Link: 33110473

Variant Present in the following documents:

• Main text
• OMCL2020-4894625.pdf

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Analysis of Circulating Tumor DNA to Predict Neoadjuvant Therapy Effectiveness and Breast Cancer Recurrence.

Journal Of Breast Cancer

Hao, Shuai S; Tian, Wuguo W; Zhao, Jianjie J; Chen, Yi Y; Zhang, Xiaohua X; Gao, Bo B; He, Yujun Y; Luo, Donglin D

Publication Date: 2020-08

Variant appearance in text: ERBB2: 3508C>G; P1170A; rs1058808

PubMed Link: 32908788

Variant Present in the following documents:

• jbc-23-373-s004.xls, sheet 1

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Pharmacogenetics for severe adverse drug reactions induced by molecular-targeted therapy.

Cancer Science

Udagawa, Chihiro C; Zembutsu, Hitoshi H

Publication Date: 2020-10

Variant appearance in text: ERBB2: Pro1170Ala; rs1058808

PubMed Link: 32780457

Variant Present in the following documents:

• Main text
• CAS-111-3445.pdf

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Optimization of a WGA-Free Molecular Tagging-Based NGS Protocol for CTCs Mutational Profiling.

International Journal Of Molecular Sciences

De Luca, Giuseppa G; Cardinali, Barbara B; Del Mastro, Lucia L; Lastraioli, Sonia S; Carli, Franca F; Ferrarini, Manlio M; Calin, George A GA; Garuti, Anna A; Mazzitelli, Carlotta C; Zupo, Simona S; Dono, Mariella M

Publication Date: 2020-06-19

Variant appearance in text: ERBB2: Pro1170Ala

PubMed Link: 32575430

Variant Present in the following documents:

• ijms-21-04364.pdf

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