Publications:

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Evaluation of AlphaFold structure-based protein stability prediction on missense variations in cancer.

Frontiers In Genetics

Keskin Karakoyun, Hilal H; Yüksel, Şirin K ŞK; Amanoglu, Ilayda I; Naserikhojasteh, Lara L; Yeşilyurt, Ahmet A; Yakıcıer, Cengiz C; Timuçin, Emel E; Akyerli, Cemaliye B CB

Publication Date: 2023

Variant appearance in text: BRCA1: W1837R

PubMed Link: 36896237

Variant Present in the following documents:

• Table1.xlsx, sheet 1

View BVdb publication page

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Assessment of small in-frame indels and C-terminal nonsense variants of BRCA1 using a validated functional assay.

Scientific Reports

Nepomuceno, Thales C TC; Dos Santos, Ana P P APP; Fernandes, Vanessa C VC; Elias, Anna B R ABR; Gomes, Thiago T TT; Suarez-Kurtz, Guilherme G; Iversen, Edwin S ES; Couch, Fergus J FJ; Monteiro, Alvaro N A ANA; Carvalho, Marcelo A MA

Publication Date: 2022-09-28

Variant appearance in text: BRCA1: W1837R

PubMed Link: 36171434

Variant Present in the following documents:

• 41598_2022_20500_MOESM1_ESM.pdf

View BVdb publication page

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Understanding and predicting the functional consequences of missense mutations in BRCA1 and BRCA2.

Scientific Reports

Aljarf, Raghad R; Shen, Mengyuan M; Pires, Douglas E V DEV; Ascher, David B DB

Publication Date: 2022-06-21

Variant appearance in text: BRCA1: W1837R

PubMed Link: 35729312

Variant Present in the following documents:

• 41598_2022_13508_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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An integrative model for the comprehensive classification of BRCA1 and BRCA2 variants of uncertain clinical significance.

Npj Genomic Medicine

Iversen, Edwin S ES; Lipton, Gary G; Hart, Steven N SN; Lee, Kun Y KY; Hu, Chunling C; Polley, Eric C EC; Pesaran, Tina T; Yussuf, Amal A; LaDuca, Holly H; Chao, Elizabeth E; Karam, Rachid R; Goldgar, David E DE; Couch, Fergus J FJ; Monteiro, Alvaro N A ANA

Publication Date: 2022-06-03

Variant appearance in text: BRCA1: W1837R

PubMed Link: 35665744

Variant Present in the following documents:

• 41525_2022_302_MOESM3_ESM.xlsx, sheet 5
• 41525_2022_302_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

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Pathogenic BRCA1 variants disrupt PLK1-regulation of mitotic spindle orientation.

Nature Communications

He, Zhengcheng Z; Ghorayeb, Ryan R; Tan, Susanna S; Chen, Ke K; Lorentzian, Amanda C AC; Bottyan, Jack J; Aalam, Syed Mohammed Musheer SMM; Pujana, Miguel Angel MA; Lange, Philipp F PF; Kannan, Nagarajan N; Eaves, Connie J CJ; Maxwell, Christopher A CA

Publication Date: 2022-04-22

Variant appearance in text: BRCA1: W1837R

PubMed Link: 35459234

Variant Present in the following documents:

• Main text
• 41467_2022_Article_29885.pdf
• 41467_2022_29885_MOESM5_ESM.xlsx, sheet 17
• 41467_2022_29885_MOESM5_ESM.xlsx, sheet 3

View BVdb publication page

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Human BRCA pathogenic variants were originated during recent human history.

Life Science Alliance

Li, Jiaheng J; Zhao, Bojin B; Huang, Teng T; Qin, Zixin Z; Wang, San Ming SM

Publication Date: 2022-05

Variant appearance in text: BRCA1: W1837R

PubMed Link: 35165121

Variant Present in the following documents:

• LSA-2021-01263_TableS2.xlsx, sheet 1

View BVdb publication page

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Quantifying prediction of pathogenicity for within-codon concordance (PM5) using 7541 functional classifications of BRCA1 and MSH2 missense variants.

Genetics In Medicine : Official Journal Of The American College Of Medical Genetics

Loong, Lucy L; Cubuk, Cankut C; Choi, Subin S; Allen, Sophie S; Torr, Beth B; Garrett, Alice A; Loveday, Chey C; Durkie, Miranda M; Callaway, Alison A; Burghel, George J GJ; Drummond, James J; Robinson, Rachel R; Berry, Ian R IR; Wallace, Andrew A; Eccles, Diana M DM; Tischkowitz, Marc M; Ellard, Sian S; Ware, James S JS; Hanson, Helen H; Turnbull, Clare C; ,

Publication Date: 2022-03

Variant appearance in text: BRCA1: 5509T>A; Trp1837Arg

PubMed Link: 34906453

Variant Present in the following documents:

• mmc1.xlsx, sheet 3

View BVdb publication page

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Targeted Therapy of Papillary Thyroid Cancer: A Comprehensive Genomic Analysis.

Frontiers In Endocrinology

Hescheler, Daniel A DA; Riemann, Burkhard B; Hartmann, Milan J M MJM; Michel, Maximilian M; Faust, Michael M; Bruns, Christiane J CJ; Alakus, Hakan H; Chiapponi, Costanza C

Publication Date: 2021

Variant appearance in text: BRCA1: W1837R

PubMed Link: 34630336

Variant Present in the following documents:

• Table_1.xlsx, sheet 2

View BVdb publication page

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Identification of pathogenic variants in cancer genes using base editing screens with editing efficiency correction.

Genome Biology

Huang, Changcai C; Li, Guangyu G; Wu, Jiayu J; Liang, Junbo J; Wang, Xiaoyue X

Publication Date: 2021-03-10

Variant appearance in text: BRCA1: W1837R

PubMed Link: 33691754

Variant Present in the following documents:

• Main text
• 13059_2021_Article_2305.pdf
• 13059_2021_2305_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML.

Npj Breast Cancer

Hart, Steven N SN; Polley, Eric C EC; Shimelis, Hermella H; Yadav, Siddhartha S; Couch, Fergus J FJ

Publication Date: 2020

Variant appearance in text: BRCA1: 5509T>A; Trp1837Arg

PubMed Link: 32377563

Variant Present in the following documents:

• 41523_2020_159_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

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Identification of targeted therapy options for gastric adenocarcinoma by comprehensive analysis of genomic data.

Gastric Cancer : Official Journal Of The International Gastric Cancer Association And The Japanese Gastric Cancer Association

Hescheler, Daniel A DA; Plum, Patrick S PS; Zander, Thomas T; Quaas, Alexander A; Korenkov, Michael M; Gassa, Asmae A; Michel, Maximilian M; Bruns, Christiane J CJ; Alakus, Hakan H

Publication Date: 2020-07

Variant appearance in text: BRCA1: W1837R

PubMed Link: 32107691

Variant Present in the following documents:

• 10120_2020_1045_MOESM1_ESM.xlsx, sheet 12

View BVdb publication page

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Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.

Database : The Journal Of Biological Databases And Curation

Islamaj Dogan, Rezarta R; Kim, Sun S; Chatr-Aryamontri, Andrew A; Wei, Chih-Hsuan CH; Comeau, Donald C DC; Antunes, Rui R; Matos, Sérgio S; Chen, Qingyu Q; Elangovan, Aparna A; Panyam, Nagesh C NC; Verspoor, Karin K; Liu, Hongfang H; Wang, Yanshan Y; Liu, Zhuang Z; Altinel, Berna B; Hüsünbeyi, Zehra Melce ZM; Özgür, Arzucan A; Fergadis, Aris A; Wang, Chen-Kai CK; Dai, Hong-Jie HJ; Tran, Tung T; Kavuluru, Ramakanth R; Luo, Ling L; Steppi, Albert A; Zhang, Jinfeng J; Qu, Jinchan J; Lu, Zhiyong Z

Publication Date: 2019-01-01

Variant appearance in text: BRCA1: W1837R

PubMed Link: 30689846

Variant Present in the following documents:

• Main text
• bay147.pdf

View BVdb publication page

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Accurate classification of BRCA1 variants with saturation genome editing.

Nature

Findlay, Gregory M GM; Daza, Riza M RM; Martin, Beth B; Zhang, Melissa D MD; Leith, Anh P AP; Gasperini, Molly M; Janizek, Joseph D JD; Huang, Xingfan X; Starita, Lea M LM; Shendure, Jay J

Publication Date: 2018-10

Variant appearance in text: BRCA1: 5509T>A; W1837R

PubMed Link: 30209399

Variant Present in the following documents:

• NIHMS1501643-supplement-2.xlsx, sheet 1

View BVdb publication page

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Comprehensive annotation of BRCA1 and BRCA2 missense variants by functionally validated sequence-based computational prediction models.

Genetics In Medicine : Official Journal Of The American College Of Medical Genetics

Hart, Steven N SN; Hoskin, Tanya T; Shimelis, Hermela H; Moore, Raymond M RM; Feng, Bingjian B; Thomas, Abigail A; Lindor, Noralane M NM; Polley, Eric C EC; Goldgar, David E DE; Iversen, Edwin E; Monteiro, Alvaro N A ANA; Suman, Vera J VJ; Couch, Fergus J FJ

Publication Date: 2019-01

Variant appearance in text: BRCA1: W1837R

PubMed Link: 29884841

Variant Present in the following documents:

• NIHMS953431-supplement-Table_S2.xls, sheet 1

View BVdb publication page

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Identification of a Novel BRCA1 Pathogenic Mutation in Korean Patients Following Reclassification of BRCA1 and BRCA2 Variants According to the ACMG Standards and Guidelines Using Relevant Ethnic Controls.

Cancer Research And Treatment

Park, Ji Soo JS; Nam, Eun Ji EJ; Park, Hyung Seok HS; Han, Jung Woo JW; Lee, Jung-Yun JY; Kim, Jieun J; Kim, Tae Il TI; Lee, Seung-Tae ST

Publication Date: 2017-10

Variant appearance in text: BRCA1: W1837R

PubMed Link: 28111427

Variant Present in the following documents:

• crt-2016-433.pdf

View BVdb publication page

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Benchmarking mutation effect prediction algorithms using functionally validated cancer-related missense mutations.

Genome Biology

Martelotto, Luciano G LG; Ng, Charlotte Ky CK; De Filippo, Maria R MR; Zhang, Yan Y; Piscuoglio, Salvatore S; Lim, Raymond S RS; Shen, Ronglai R; Norton, Larry L; Reis-Filho, Jorge S JS; Weigelt, Britta B

Publication Date: 2014-10-28

Variant appearance in text: BRCA1: W1837R

PubMed Link: 25348012

Variant Present in the following documents:

• 13059_2014_484_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Separation of biological proteins by liquid chromatography.

Saudi Pharmaceutical Journal : Spj : The Official Publication Of The Saudi Pharmaceutical Society

Ali, Imran I; Aboul-Enein, Hassan Y HY; Singh, Prashant P; Singh, Rakesh R; Sharma, Bhavtosh B

Publication Date: 2010-04

Variant appearance in text: BRCA1: Trp1837Arg

PubMed Link: 23960722

Variant Present in the following documents:

• Main text

View BVdb publication page

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Plasmon based biosensor for distinguishing different peptides mutation states.

Scientific Reports

Das, Gobind G; Chirumamilla, Manohar M; Toma, Andrea A; Gopalakrishnan, Anisha A; Zaccaria, Remo Proietti RP; Alabastri, Alessandro A; Leoncini, Marco M; Di Fabrizio, Enzo E

Publication Date: 2013

Variant appearance in text: BRCA1: W1837R

PubMed Link: 23652645

Variant Present in the following documents:

• srep01792.pdf

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Identification of BRCA1 missense substitutions that confer partial functional activity: potential moderate risk variants?

Breast Cancer Research : Bcr

Lovelock, Paul K PK; Spurdle, Amanda B AB; Mok, Myth T S MT; Farrugia, Daniel J DJ; Lakhani, Sunil R SR; Healey, Sue S; Arnold, Stephen S; Buchanan, Daniel D; , ; Couch, Fergus J FJ; Henderson, Beric R BR; Goldgar, David E DE; Tavtigian, Sean V SV; Chenevix-Trench, Georgia G; Brown, Melissa A MA

Publication Date: 2007

Variant appearance in text: BRCA1: W1837R

PubMed Link: 18036263

Variant Present in the following documents:

• bcr1826.pdf

View BVdb publication page

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