APPLICATION OF THE ACMG/AMP FRAMEWORK TO CAPTURE EVIDENCE RELEVANT TO PREDICTED AND OBSERVED IMPACT ON SPLICING: RECOMMENDATIONS FROM THE CLINGEN SVI SPLICING SUBGROUP.
Medrxiv : The Preprint Server For Health Sciences
Walker, Logan C LC; de la Hoya, Miguel M; Wiggins, George Ar GA; Lindy, Amanda A; Vincent, Lisa M LM; Parsons, Michael M; Canson, Daffodil M DM; Bis-Brewer, Dana D; Cass, Ashley A; Tchourbanov, Alexander A; Zimmermann, Heather H; Byrne, Alicia B AB; Pesaran, Tina T; Karam, Rachid R; Harrison, Steven M SM; , ; Spurdle, Amanda B AB
Mitomycin C in Homologous Recombination Deficient Metastatic Pancreatic Cancer after Disease Progression on Platinum-Based Chemotherapy and Olaparib.
Biomedicines
Botrus, Gehan G; Roe, Denise D; Jameson, Gayle S GS; Junior, Pedro Luiz Serrano Uson PLSU; Korn, Ronald Lee RL; Caldwell, Lana L; Bargenquast, Taylor T; Miller, Max M; Borazanci, Erkut Hasan EH
An integrative model for the comprehensive classification of BRCA1 and BRCA2 variants of uncertain clinical significance.
Npj Genomic Medicine
Iversen, Edwin S ES; Lipton, Gary G; Hart, Steven N SN; Lee, Kun Y KY; Hu, Chunling C; Polley, Eric C EC; Pesaran, Tina T; Yussuf, Amal A; LaDuca, Holly H; Chao, Elizabeth E; Karam, Rachid R; Goldgar, David E DE; Couch, Fergus J FJ; Monteiro, Alvaro N A ANA
Breast cancer risks associated with missense variants in breast cancer susceptibility genes.
Genome Medicine
Dorling, Leila L; Carvalho, Sara S; Allen, Jamie J; Parsons, Michael T MT; Fortuno, Cristina C; González-Neira, Anna A; Heijl, Stephan M SM; Adank, Muriel A MA; Ahearn, Thomas U TU; Andrulis, Irene L IL; Auvinen, Päivi P; Becher, Heiko H; Beckmann, Matthias W MW; Behrens, Sabine S; Bermisheva, Marina M; Bogdanova, Natalia V NV; Bojesen, Stig E SE; Bolla, Manjeet K MK; Bremer, Michael M; Briceno, Ignacio I; Camp, Nicola J NJ; Campbell, Archie A; Castelao, Jose E JE; Chang-Claude, Jenny J; Chanock, Stephen J SJ; Chenevix-Trench, Georgia G; , ; Collée, J Margriet JM; Czene, Kamila K; Dennis, Joe J; Dörk, Thilo T; Eriksson, Mikael M; Evans, D Gareth DG; Fasching, Peter A PA; Figueroa, Jonine J; Flyger, Henrik H; Gabrielson, Marike M; Gago-Dominguez, Manuela M; García-Closas, Montserrat M; Giles, Graham G GG; Glendon, Gord G; Guénel, Pascal P; Gündert, Melanie M; Hadjisavvas, Andreas A; Hahnen, Eric E; Hall, Per P; Hamann, Ute U; Harkness, Elaine F EF; Hartman, Mikael M; Hogervorst, Frans B L FBL; Hollestelle, Antoinette A; Hoppe, Reiner R; Howell, Anthony A; , ; , ; Jakubowska, Anna A; Jung, Audrey A; Khusnutdinova, Elza E; Kim, Sung-Won SW; Ko, Yon-Dschun YD; Kristensen, Vessela N VN; Lakeman, Inge M M IMM; Li, Jingmei J; Lindblom, Annika A; Loizidou, Maria A MA; Lophatananon, Artitaya A; Lubiński, Jan J; Luccarini, Craig C; Madsen, Michael J MJ; Mannermaa, Arto A; Manoochehri, Mehdi M; Margolin, Sara S; Mavroudis, Dimitrios D; Milne, Roger L RL; Mohd Taib, Nur Aishah NA; Muir, Kenneth K; Nevanlinna, Heli H; Newman, William G WG; Oosterwijk, Jan C JC; Park, Sue K SK; Peterlongo, Paolo P; Radice, Paolo P; Saloustros, Emmanouil E; Sawyer, Elinor J EJ; Schmutzler, Rita K RK; Shah, Mitul M; Sim, Xueling X; Southey, Melissa C MC; Surowy, Harald H; Suvanto, Maija M; Tomlinson, Ian I; Torres, Diana D; Truong, Thérèse T; van Asperen, Christi J CJ; Waltes, Regina R; Wang, Qin Q; Yang, Xiaohong R XR; Pharoah, Paul D P PDP; Schmidt, Marjanka K MK; Benitez, Javier J; Vroling, Bas B; Dunning, Alison M AM; Teo, Soo Hwang SH; Kvist, Anders A; de la Hoya, Miguel M; Devilee, Peter P; Spurdle, Amanda B AB; Vreeswijk, Maaike P G MPG; Easton, Douglas F DF
Publication Date: 2022-05-18
Variant appearance in text: BRCA1: 5411T>A; Val1804Asp
Quantifying prediction of pathogenicity for within-codon concordance (PM5) using 7541 functional classifications of BRCA1 and MSH2 missense variants.
Genetics In Medicine : Official Journal Of The American College Of Medical Genetics
Loong, Lucy L; Cubuk, Cankut C; Choi, Subin S; Allen, Sophie S; Torr, Beth B; Garrett, Alice A; Loveday, Chey C; Durkie, Miranda M; Callaway, Alison A; Burghel, George J GJ; Drummond, James J; Robinson, Rachel R; Berry, Ian R IR; Wallace, Andrew A; Eccles, Diana M DM; Tischkowitz, Marc M; Ellard, Sian S; Ware, James S JS; Hanson, Helen H; Turnbull, Clare C; ,
Publication Date: 2022-03
Variant appearance in text: BRCA1: 5411T>A; V1804D
The value of comprehensive genomic sequencing to maximize the identification of clinically actionable alterations in advanced cancer patients: a case series.
Oncotarget
Drenner, Kevin K; Basu, Gargi D GD; Goodman, Laurie J LJ; Ozols, Audrey A AA; LoBello, Janine R JR; Royce, Thomas T; Gordon, Michael S MS; Borazanci, Erkut H EH; Steinbach, Margaux A MA; Trent, Jeffrey J; Sharma, Sunil S
REVEL and BayesDel outperform other in silico meta-predictors for clinical variant classification.
Scientific Reports
Tian, Yuan Y; Pesaran, Tina T; Chamberlin, Adam A; Fenwick, R Bryn RB; Li, Shuwei S; Gau, Chia-Ling CL; Chao, Elizabeth C EC; Lu, Hsiao-Mei HM; Black, Mary Helen MH; Qian, Dajun D
Publication Date: 2019-09-04
Variant appearance in text: BRCA1: 5411T>A; V1804D
Analysis of the pathogenic variants of BRCA1 and BRCA2 using next-generation sequencing in women with familial breast cancer: a case-control study.
Bmc Cancer
Zayas-Villanueva, Omar Alejandro OA; Campos-Acevedo, Luis Daniel LD; Lugo-Trampe, José de Jesús JJ; Hernández-Barajas, David D; González-Guerrero, Juan Francisco JF; Noriega-Iriondo, María Fernanda MF; Ramírez-Sánchez, Ilse Alejandra IA; Martínez-de-Villarreal, Laura Elia LE
Publication Date: 2019-07-22
Variant appearance in text: BRCA1: Val1804Asp; rs80356920
Population and breast cancer patients' analysis reveals the diversity of genomic variation of the BRCA genes in the Mexican population.
Human Genomics
Fernández-Lopez, J C JC; Romero-Córdoba, S S; Rebollar-Vega, R R; Alfaro-Ruiz, L A LA; Jiménez-Morales, S S; Beltrán-Anaya, F F; Arellano-Llamas, R R; Cedro-Tanda, A A; Rios-Romero, M M; Ramirez-Florencio, M M; Bautista-Piña, V V; Dominguez-Reyes, C C; Villegas-Carlos, F F; Tenorio-Torres, A A; Hidalgo-Miranda, A A
Publication Date: 2019-01-10
Variant appearance in text: BRCA1: 5411T>A; V1804D
A Bayesian framework for efficient and accurate variant prediction.
Plos One
Qian, Dajun D; Li, Shuwei S; Tian, Yuan Y; Clifford, Jacob W JW; Sarver, Brice A J BAJ; Pesaran, Tina T; Gau, Chia-Ling CL; Elliott, Aaron M AM; Lu, Hsiao-Mei HM; Black, Mary Helen MH
Publication Date: 2018
Variant appearance in text: BRCA1: 5411T>A; V1804D
Accurate classification of BRCA1 variants with saturation genome editing.
Nature
Findlay, Gregory M GM; Daza, Riza M RM; Martin, Beth B; Zhang, Melissa D MD; Leith, Anh P AP; Gasperini, Molly M; Janizek, Joseph D JD; Huang, Xingfan X; Starita, Lea M LM; Shendure, Jay J
Publication Date: 2018-10
Variant appearance in text: BRCA1: 5411T>A; V1804D
A new bioinformatics tool to help assess the significance of BRCA1 variants.
Human Genomics
Cusin, Isabelle I; Teixeira, Daniel D; Zahn-Zabal, Monique M; Rech de Laval, Valentine V; Gleizes, Anne A; Viassolo, Valeria V; Chappuis, Pierre O PO; Hutter, Pierre P; Bairoch, Amos A; Gaudet, Pascale P
Comprehensive annotation of BRCA1 and BRCA2 missense variants by functionally validated sequence-based computational prediction models.
Genetics In Medicine : Official Journal Of The American College Of Medical Genetics
Hart, Steven N SN; Hoskin, Tanya T; Shimelis, Hermela H; Moore, Raymond M RM; Feng, Bingjian B; Thomas, Abigail A; Lindor, Noralane M NM; Polley, Eric C EC; Goldgar, David E DE; Iversen, Edwin E; Monteiro, Alvaro N A ANA; Suman, Vera J VJ; Couch, Fergus J FJ
Functional Assessment of Genetic Variants with Outcomes Adapted to Clinical Decision-Making.
Plos Genetics
Thouvenot, Pierre P; Ben Yamin, Barbara B; Fourrière, Lou L; Lescure, Aurianne A; Boudier, Thomas T; Del Nery, Elaine E; Chauchereau, Anne A; Goldgar, David E DE; Houdayer, Claude C; Stoppa-Lyonnet, Dominique D; Nicolas, Alain A; Millot, Gaël A GA
Identification of Medically Actionable Secondary Findings in the 1000 Genomes.
Plos One
Olfson, Emily E; Cottrell, Catherine E CE; Davidson, Nicholas O NO; Gurnett, Christina A CA; Heusel, Jonathan W JW; Stitziel, Nathan O NO; Chen, Li-Shiun LS; Hartz, Sarah S; Nagarajan, Rakesh R; Saccone, Nancy L NL; Bierut, Laura J LJ
Publication Date: 2015
Variant appearance in text: BRCA1: 5411T>A; Val1804Asp; rs80356920
BRCA1 Circos: a visualisation resource for functional analysis of missense variants.
Journal Of Medical Genetics
Jhuraney, Ankita A; Velkova, Aneliya A; Johnson, Randall C RC; Kessing, Bailey B; Carvalho, Renato S RS; Whiley, Phillip P; Spurdle, Amanda B AB; Vreeswijk, Maaike P G MP; Caputo, Sandrine M SM; Millot, Gael A GA; Vega, Ana A; Coquelle, Nicolas N; Galli, Alvaro A; Eccles, Diana D; Blok, Marinus J MJ; Pal, Tuya T; van der Luijt, Rob B RB; Santamariña Pena, Marta M; Neuhausen, Susan L SL; Donenberg, Talia T; Machackova, Eva E; Thomas, Simon S; Vallée, Maxime M; Couch, Fergus J FJ; Tavtigian, Sean V SV; Glover, J N Mark JN; Carvalho, Marcelo A MA; Brody, Lawrence C LC; Sharan, Shyam K SK; Monteiro, Alvaro N AN; ,
Martelotto, Luciano G LG; Ng, Charlotte Ky CK; De Filippo, Maria R MR; Zhang, Yan Y; Piscuoglio, Salvatore S; Lim, Raymond S RS; Shen, Ronglai R; Norton, Larry L; Reis-Filho, Jorge S JS; Weigelt, Britta B
Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing.
Plos One
Bodian, Dale L DL; McCutcheon, Justine N JN; Kothiyal, Prachi P; Huddleston, Kathi C KC; Iyer, Ramaswamy K RK; Vockley, Joseph G JG; Niederhuber, John E JE
Publication Date: 2014
Variant appearance in text: BRCA1: 5411T>A; rs80356920
A guide for functional analysis of BRCA1 variants of uncertain significance.
Human Mutation
Millot, Gaël A GA; Carvalho, Marcelo A MA; Caputo, Sandrine M SM; Vreeswijk, Maaike P G MP; Brown, Melissa A MA; Webb, Michelle M; Rouleau, Etienne E; Neuhausen, Susan L SL; Hansen, Thomas v O Tv; Galli, Alvaro A; Brandão, Rita D RD; Blok, Marinus J MJ; Velkova, Aneliya A; Couch, Fergus J FJ; Monteiro, Alvaro N A AN; ,
Full-exon pyrosequencing screening of BRCA germline mutations in Mexican women with inherited breast and ovarian cancer.
Plos One
Vaca-Paniagua, Felipe F; Alvarez-Gomez, Rosa María RM; Fragoso-Ontiveros, Verónica V; Vidal-Millan, Silvia S; Herrera, Luis Alonso LA; Cantú, David D; Bargallo-Rocha, Enrique E; Mohar, Alejandro A; López-Camarillo, César C; Pérez-Plasencia, Carlos C
Germline BRCA1 mutations increase prostate cancer risk.
British Journal Of Cancer
Leongamornlert, D D; Mahmud, N N; Tymrakiewicz, M M; Saunders, E E; Dadaev, T T; Castro, E E; Goh, C C; Govindasami, K K; Guy, M M; O'Brien, L L; Sawyer, E E; Hall, A A; Wilkinson, R R; Easton, D D; , ; Goldgar, D D; Eeles, R R; Kote-Jarai, Z Z
A review of a multifactorial probability-based model for classification of BRCA1 and BRCA2 variants of uncertain significance (VUS).
Human Mutation
Lindor, Noralane M NM; Guidugli, Lucia L; Wang, Xianshu X; Vallée, Maxime P MP; Monteiro, Alvaro N A AN; Tavtigian, Sean S; Goldgar, David E DE; Couch, Fergus J FJ
Publication Date: 2012-01
Variant appearance in text: BRCA1: 5411T>A; V1804D
A computational method to classify variants of uncertain significance using functional assay data with application to BRCA1.
Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology
Iversen, Edwin S ES; Couch, Fergus J FJ; Goldgar, David E DE; Tavtigian, Sean V SV; Monteiro, Alvaro N A AN
Screening for BRCA1, BRCA2, CHEK2, PALB2, BRIP1, RAD50, and CDH1 mutations in high-risk Finnish BRCA1/2-founder mutation-negative breast and/or ovarian cancer individuals.
Breast Cancer Research : Bcr
Kuusisto, Kirsi M KM; Bebel, Aleksandra A; Vihinen, Mauno M; Schleutker, Johanna J; Sallinen, Satu-Leena SL
Comprehensive analysis of missense variations in the BRCT domain of BRCA1 by structural and functional assays.
Cancer Research
Lee, Megan S MS; Green, Ruth R; Marsillac, Sylvia M SM; Coquelle, Nicolas N; Williams, R Scott RS; Yeung, Telford T; Foo, Desmond D; Hau, D Duong DD; Hui, Ben B; Monteiro, Alvaro N A AN; Glover, J N Mark JN
Analysis of a set of missense, frameshift, and in-frame deletion variants of BRCA1.
Mutation Research
Carvalho, Marcelo M; Pino, Maria A MA; Karchin, Rachel R; Beddor, Jennifer J; Godinho-Netto, Martha M; Mesquita, Rafael D RD; Rodarte, Renato S RS; Vaz, Danielle C DC; Monteiro, Viviane A VA; Manoukian, Siranoush S; Colombo, Mara M; Ripamonti, Carla B CB; Rosenquist, Richard R; Suthers, Graeme G; Borg, Ake A; Radice, Paolo P; Grist, Scott A SA; Monteiro, Alvaro N A AN; Billack, Blase B
Identification of BRCA1 missense substitutions that confer partial functional activity: potential moderate risk variants?
Breast Cancer Research : Bcr
Lovelock, Paul K PK; Spurdle, Amanda B AB; Mok, Myth T S MT; Farrugia, Daniel J DJ; Lakhani, Sunil R SR; Healey, Sue S; Arnold, Stephen S; Buchanan, Daniel D; , ; Couch, Fergus J FJ; Henderson, Beric R BR; Goldgar, David E DE; Tavtigian, Sean V SV; Chenevix-Trench, Georgia G; Brown, Melissa A MA
A systematic genetic assessment of 1,433 sequence variants of unknown clinical significance in the BRCA1 and BRCA2 breast cancer-predisposition genes.
American Journal Of Human Genetics
Easton, Douglas F DF; Deffenbaugh, Amie M AM; Pruss, Dmitry D; Frye, Cynthia C; Wenstrup, Richard J RJ; Allen-Brady, Kristina K; Tavtigian, Sean V SV; Monteiro, Alvaro N A AN; Iversen, Edwin S ES; Couch, Fergus J FJ; Goldgar, David E DE
Determination of cancer risk associated with germ line BRCA1 missense variants by functional analysis.
Cancer Research
Carvalho, Marcelo A MA; Marsillac, Sylvia M SM; Karchin, Rachel R; Manoukian, Siranoush S; Grist, Scott S; Swaby, Ramona F RF; Urmenyi, Turan P TP; Rondinelli, Edson E; Silva, Rosane R; Gayol, Luis L; Baumbach, Lisa L; Sutphen, Rebecca R; Pickard-Brzosowicz, Jennifer L JL; Nathanson, Katherine L KL; Sali, Andrej A; Goldgar, David D; Couch, Fergus J FJ; Radice, Paolo P; Monteiro, Alvaro N A AN