Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GAA: L18F

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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High-throughput screening of spike variants uncovers the key residues that alter the affinity and antigenicity of SARS-CoV-2.

Cell Discovery

Luo, Yufeng Y; Liu, Shuo S; Xue, Jiguo J; Yang, Ye Y; Zhao, Junxuan J; Sun, Ying Y; Wang, Bolun B; Yin, Shenyi S; Li, Juan J; Xia, Yuchao Y; Ge, Feixiang F; Dong, Jiqiao J; Guo, Lvze L; Ye, Buqing B; Huang, Weijin W; Wang, Youchun Y; Xi, Jianzhong Jeff JJ

Publication Date: 2023-04-11

Variant appearance in text: GAA: L18F

PubMed Link: 37041132

Variant Present in the following documents:

• 41421_2023_534_MOESM1_ESM.pdf

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Comparative Genomic Analysis and Physiological Properties of Limosilactobacillus fermentum SMFM2017-NK2 with Ability to Inflammatory Bowel Disease.

Microorganisms

Ann, Sumin S; Choi, Yukyung Y; Yoon, Yohan Y

Publication Date: 2023-02-21

Variant appearance in text: GAA: 52C>T

PubMed Link: 36985121

Variant Present in the following documents:

• microorganisms-11-00547.pdf

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SARS-CoV-2 Variants in Paraguay: Detection and Surveillance with an Economical and Scalable Molecular Protocol.

Viruses

Martinez, Magaly M; Nguyen, Phuong-Vi PV; Su, Maxwell M; Cardozo, Fátima F; Valenzuela, Adriana A; Franco, Laura L; Galeano, María Eugenia ME; Rojas, Leticia Elizabeth LE; Díaz Acosta, Chyntia Carolina CC; Fernández, Jonás J; Ortiz, Joel J; Del Puerto, Florencia F; Mendoza, Laura L; Nara, Eva E; Rojas, Alejandra A; Waggoner, Jesse J JJ

Publication Date: 2022-04-22

Variant appearance in text: GAA: L18F

PubMed Link: 35632615

Variant Present in the following documents:

• viruses-14-00873.pdf

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A SARS-CoV-2 Delta variant containing mutation in the probe binding region used for RT-qPCR test in Japan exhibited atypical PCR amplification and might induce false negative result.

Journal Of Infection And Chemotherapy : Official Journal Of The Japan Society Of Chemotherapy

Rajib, Samiul Alam SA; Ogi, Yasuhiro Y; Hossain, Md Belal MB; Ikeda, Terumasa T; Tanaka, Eiichi E; Kawaguchi, Tatsuya T; Satou, Yorifumi Y

Publication Date: 2022-05

Variant appearance in text: GAA: L18F

PubMed Link: 35144878

Variant Present in the following documents:

• mmc2.xls, sheet 1

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Temporal-Geographical Dispersion of SARS-CoV-2 Spike Glycoprotein Variant Lineages and Their Functional Prediction Using in Silico Approach.

Mbio

Boon, Siaw Shi SS; Xia, Chichao C; Wang, Maggie Haitian MH; Yip, Ka Lai KL; Luk, Ho Yin HY; Li, Sile S; Ng, Rita W Y RWY; Lai, Christopher K C CKC; Chan, Paul Kay Sheung PKS; Chen, Zigui Z

Publication Date: 2021-10-26

Variant appearance in text: GAA: L18F

PubMed Link: 34700382

Variant Present in the following documents:

• mbio.02687-21.pdf

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High-efficiency delivery of CRISPR-Cas9 by engineered probiotics enables precise microbiome editing.

Molecular Systems Biology

Neil, Kevin K; Allard, Nancy N; Roy, Patricia P; Grenier, Frédéric F; Menendez, Alfredo A; Burrus, Vincent V; Rodrigue, Sébastien S

Publication Date: 2021-10

Variant appearance in text: GAA: 52C>T

PubMed Link: 34665940

Variant Present in the following documents:

• MSB-17-e10335-s001.xlsx, sheet 2

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Haplotype-resolved de novo assembly of the Vero cell line genome.

Npj Vaccines

Sène, Marie-Angélique MA; Kiesslich, Sascha S; Djambazian, Haig H; Ragoussis, Jiannis J; Xia, Yu Y; Kamen, Amine A AA

Publication Date: 2021-08-20

Variant appearance in text: GAA: 52C>T

PubMed Link: 34417462

Variant Present in the following documents:

• 41541_2021_358_MOESM3_ESM.xlsx, sheet 1

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: GAA: 52C>T

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

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Molecular basis of a new ovine model for human 3M syndrome-2.

Bmc Genetics

Woolley, S A SA; Hayes, S E SE; Shariflou, M R MR; Nicholas, F W FW; Willet, C E CE; O'Rourke, B A BA; Tammen, I I

Publication Date: 2020-09-15

Variant appearance in text: GAA: 52C>T

PubMed Link: 32933480

Variant Present in the following documents:

• 12863_2020_913_MOESM4_ESM.xlsx, sheet 1

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Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities.

Nature Communications

Nichols, Caitlin A CA; Gibson, William J WJ; Brown, Meredith S MS; Kosmicki, Jack A JA; Busanovich, John P JP; Wei, Hope H; Urbanski, Laura M LM; Curimjee, Naomi N; Berger, Ashton C AC; Gao, Galen F GF; Cherniack, Andrew D AD; Dhe-Paganon, Sirano S; Paolella, Brenton R BR; Beroukhim, Rameen R

Publication Date: 2020-05-20

Variant appearance in text: GAA: 52C>T

PubMed Link: 32433464

Variant Present in the following documents:

• 41467_2020_16399_MOESM5_ESM.xlsx, sheet 1

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Genetic dynamics in untreated CLL patients with either stable or progressive disease: a longitudinal study.

Journal Of Hematology & Oncology

Ramassone, Alice A; D'Argenio, Andrea A; Veronese, Angelo A; Basti, Alessio A; Soliman, Shimaa Hassan AbdelAziz SHA; Volinia, Stefano S; Bassi, Cristian C; Pagotto, Sara S; Ferracin, Manuela M; Lupini, Laura L; Saccenti, Elena E; Balatti, Veronica V; Pepe, Felice F; Rassenti, Laura Z LZ; Innocenti, Idanna I; Autore, Francesco F; Marzetti, Laura L; Mariani-Costantini, Renato R; Kipps, Thomas J TJ; Negrini, Massimo M; Laurenti, Luca L; Visone, Rosa R

Publication Date: 2019-11-19

Variant appearance in text: GAA: 52C>T

PubMed Link: 31744508

Variant Present in the following documents:

• 13045_2019_802_MOESM6_ESM.xlsx, sheet 3

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: GAA: 52C>T

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

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Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.

Plos Neglected Tropical Diseases

Carnes, Jason J; Anupama, Atashi A; Balmer, Oliver O; Jackson, Andrew A; Lewis, Michael M; Brown, Rob R; Cestari, Igor I; Desquesnes, Marc M; Gendrin, Claire C; Hertz-Fowler, Christiane C; Imamura, Hideo H; Ivens, Alasdair A; Kořený, Luděk L; Lai, De-Hua DH; MacLeod, Annette A; McDermott, Suzanne M SM; Merritt, Chris C; Monnerat, Severine S; Moon, Wonjong W; Myler, Peter P; Phan, Isabelle I; Ramasamy, Gowthaman G; Sivam, Dhileep D; Lun, Zhao-Rong ZR; Lukeš, Julius J; Stuart, Ken K; Schnaufer, Achim A

Publication Date: 2015-01

Variant appearance in text: GAA: Leu18Phe

PubMed Link: 25568942

Variant Present in the following documents:

• pntd.0003404.s019.xlsx, sheet 1

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