Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GAA: R190S

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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SARS-CoV-2 Variants in Paraguay: Detection and Surveillance with an Economical and Scalable Molecular Protocol.

Viruses

Martinez, Magaly M; Nguyen, Phuong-Vi PV; Su, Maxwell M; Cardozo, Fátima F; Valenzuela, Adriana A; Franco, Laura L; Galeano, María Eugenia ME; Rojas, Leticia Elizabeth LE; Díaz Acosta, Chyntia Carolina CC; Fernández, Jonás J; Ortiz, Joel J; Del Puerto, Florencia F; Mendoza, Laura L; Nara, Eva E; Rojas, Alejandra A; Waggoner, Jesse J JJ

Publication Date: 2022-04-22

Variant appearance in text: GAA: R190S

PubMed Link: 35632615

Variant Present in the following documents:

• viruses-14-00873.pdf

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Genomic Surveillance of COVID-19 Variants With Language Models and Machine Learning.

Frontiers In Genetics

Nagpal, Sargun S; Pal, Ridam R; Ashima, ; Tyagi, Ananya A; Tripathi, Sadhana S; Nagori, Aditya A; Ahmad, Saad S; Mishra, Hara Prasad HP; Malhotra, Rishabh R; Kutum, Rintu R; Sethi, Tavpritesh T

Publication Date: 2022

Variant appearance in text: GAA: R190S

PubMed Link: 35464852

Variant Present in the following documents:

• DataSheet1.pdf

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A SARS-CoV-2 Delta variant containing mutation in the probe binding region used for RT-qPCR test in Japan exhibited atypical PCR amplification and might induce false negative result.

Journal Of Infection And Chemotherapy : Official Journal Of The Japan Society Of Chemotherapy

Rajib, Samiul Alam SA; Ogi, Yasuhiro Y; Hossain, Md Belal MB; Ikeda, Terumasa T; Tanaka, Eiichi E; Kawaguchi, Tatsuya T; Satou, Yorifumi Y

Publication Date: 2022-05

Variant appearance in text: GAA: R190S

PubMed Link: 35144878

Variant Present in the following documents:

• mmc2.xls, sheet 1

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Phylogenetic analysis of SARS-CoV-2 viruses circulating in the South American region: genetic relations and vaccine strain match.

Virus Research

Perbolianachis, Paula P; Ferla, Diego D; Arce, Rodrigo R; Ferreiro, Irene I; Costábile, Alicia A; Paz, Mercedes M; Simón, Diego D; Moreno, Pilar P; Cristina, Juan J

Publication Date: 2022-01-21

Variant appearance in text: GAA: R190S

PubMed Link: 35074431

Variant Present in the following documents:

• Main text

View BVdb publication page

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Phylogenetic analysis of SARS-CoV-2 viruses circulating in the South American region: Genetic relations and vaccine strain match.

Virus Research

Perbolianachis, Paula P; Ferla, Diego D; Arce, Rodrigo R; Ferreiro, Irene I; Costábile, Alicia A; Paz, Mercedes M; Simón, Diego D; Moreno, Pilar P; Cristina, Juan J

Publication Date: 2022-04-02

Variant appearance in text: GAA: R190S

PubMed Link: 35074431

Variant Present in the following documents:

• Main text

View BVdb publication page

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A Routine Sanger Sequencing Target Specific Mutation Assay for SARS-CoV-2 Variants of Concern and Interest.

Viruses

Lee, Sin Hang SH

Publication Date: 2021-11-29

Variant appearance in text: GAA: R190S

PubMed Link: 34960655

Variant Present in the following documents:

• Main text
• viruses-13-02386.pdf

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A Routine Sanger Sequencing Target Specific Mutation Assay for SARS-CoV-2 Variants of Concern and Interest.

Viruses

Lee, Sin Hang SH

Publication Date: 2021-11-29

Variant appearance in text: GAA: R190S

PubMed Link: 34960655

Variant Present in the following documents:

• Main text
• viruses-13-02386.pdf

View BVdb publication page

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Temporal-Geographical Dispersion of SARS-CoV-2 Spike Glycoprotein Variant Lineages and Their Functional Prediction Using in Silico Approach.

Mbio

Boon, Siaw Shi SS; Xia, Chichao C; Wang, Maggie Haitian MH; Yip, Ka Lai KL; Luk, Ho Yin HY; Li, Sile S; Ng, Rita W Y RWY; Lai, Christopher K C CKC; Chan, Paul Kay Sheung PKS; Chen, Zigui Z

Publication Date: 2021-10-26

Variant appearance in text: GAA: R190S

PubMed Link: 34700382

Variant Present in the following documents:

• mbio.02687-21.pdf

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Whole-exome sequencing identified a novel heterozygous mutation of SALL1 and a new homozygous mutation of PTPRQ in a Chinese family with Townes-Brocks syndrome and hearing loss.

Bmc Medical Genomics

Yang, Guangxian G; Yin, Yi Y; Tan, Zhiping Z; Liu, Jian J; Deng, Xicheng X; Yang, Yifeng Y

Publication Date: 2021-01-21

Variant appearance in text: GAA: R190S

PubMed Link: 33478437

Variant Present in the following documents:

• 12920_2021_871_MOESM2_ESM.xls, sheet 1

View BVdb publication page

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