Publications:

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Getting Closer to Decrypting the Phase Transitions of Bacterial Biomolecules.

Biomolecules

Sołtys, Katarzyna K; Tarczewska, Aneta A; Bystranowska, Dominika D; Sozańska, Nikola N

Publication Date: 2022-06-28

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PubMed Link: 35883463

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• Main text
• biomolecules-12-00907.pdf

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High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillata.

Science Advances

Wada, Naohisa N; Hsu, Ming-Tsung MT; Tandon, Kshitij K; Hsiao, Silver Sung-Yun SS; Chen, Hsing-Ju HJ; Chen, Yu-Hsiang YH; Chiang, Pei-Wen PW; Yu, Sheng-Ping SP; Lu, Chih-Ying CY; Chiou, Yu-Jing YJ; Tu, Yung-Chi YC; Tian, Xuejiao X; Chen, Bi-Chang BC; Lee, Der-Chuen DC; Yamashiro, Hideyuki H; Bourne, David G DG; Tang, Sen-Lin SL

Publication Date: 2022-07-08

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PubMed Link: 35857470

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• sciadv.abo2431_sm.pdf

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Specific (sialyl-)Lewis core 2 O-glycans differentiate colorectal cancer from healthy colon epithelium.

Theranostics

Madunić, Katarina K; Mayboroda, Oleg A OA; Zhang, Tao T; Weber, Julia J; Boons, Geert-Jan GJ; Morreau, Hans H; van Vlierberghe, Ronald R; van Wezel, Tom T; Lageveen-Kammeijer, Guinevere S M GSM; Wuhrer, Manfred M

Publication Date: 2022

Variant appearance in text: PALM: S10A

PubMed Link: 35832079

Variant Present in the following documents:

• thnov12p4498.pdf

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Exosomal mitochondrial tRNAs and miRNAs as potential predictors of inflammation in renal proximal tubular epithelial cells.

Molecular Therapy. Nucleic Acids

Ranches, Glory G; Zeidler, Maximilian M; Kessler, Roman R; Hoelzl, Martina M; Hess, Michael W MW; Vosper, Jonathan J; Perco, Paul P; Schramek, Herbert H; Kummer, Kai K KK; Kress, Michaela M; Krogsdam, Anne A; Rudnicki, Michael M; Mayer, Gert G; Huettenhofer, Alexander A

Publication Date: 2022-06-14

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PubMed Link: 35664695

Variant Present in the following documents:

• mmc2.pdf
• main.pdf

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CTCF-mediated chromatin looping provides a topological framework for the formation of phase-separated transcriptional condensates.

Nucleic Acids Research

Lee, Ryanggeun R; Kang, Moo-Koo MK; Kim, Yong-Jin YJ; Yang, Bobae B; Shim, Hwanyong H; Kim, Sugyung S; Kim, Kyungwoo K; Yang, Chul Min CM; Min, Byeong-Gyu BG; Jung, Woong-Jae WJ; Lee, Eun-Chong EC; Joo, Jung-Sik JS; Park, Gunhee G; Cho, Won-Ki WK; Kim, Hyoung-Pyo HP

Publication Date: 2021-12-20

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PubMed Link: 34931241

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• Main text
• gkab1242.pdf

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CTCF-mediated chromatin looping provides a topological framework for the formation of phase-separated transcriptional condensates.

Nucleic Acids Research

Lee, Ryanggeun R; Kang, Moo-Koo MK; Kim, Yong-Jin YJ; Yang, Bobae B; Shim, Hwanyong H; Kim, Sugyung S; Kim, Kyungwoo K; Yang, Chul Min CM; Min, Byeong-Gyu BG; Jung, Woong-Jae WJ; Lee, Eun-Chong EC; Joo, Jung-Sik JS; Park, Gunhee G; Cho, Won-Ki WK; Kim, Hyoung-Pyo HP

Publication Date: 2022-01-11

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PubMed Link: 34931241

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• Main text
• gkab1242.pdf

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Robust, fiducial-free drift correction for super-resolution imaging.

Scientific Reports

Wester, Michael J MJ; Schodt, David J DJ; Mazloom-Farsibaf, Hanieh H; Fazel, Mohamadreza M; Pallikkuth, Sandeep S; Lidke, Keith A KA

Publication Date: 2021-12-08

Variant appearance in text: PALM: S10a

PubMed Link: 34880301

Variant Present in the following documents:

• 41598_2021_Article_2850.pdf

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Structure, dynamics, and regulation of TRF1-TIN2-mediated trans- and cis-interactions on telomeric DNA.

The Journal Of Biological Chemistry

Pan, Hai H; Kaur, Parminder P; Barnes, Ryan R; Detwiler, Ariana C AC; Sanford, Samantha Lynn SL; Liu, Ming M; Xu, Pengning P; Mahn, Chelsea C; Tang, Qingyu Q; Hao, Pengyu P; Bhattaram, Dhruv D; You, Changjiang C; Gu, Xinyun X; Lu, Warren W; Piehler, Jacob J; Xu, Guozhou G; Weninger, Keith K; Riehn, Robert R; Opresko, Patricia L PL; Wang, Hong H

Publication Date: 2021-09

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PubMed Link: 34403696

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• main.pdf

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ORANGE: A CRISPR/Cas9-based genome editing toolbox for epitope tagging of endogenous proteins in neurons.

Plos Biology

Willems, Jelmer J; de Jong, Arthur P H APH; Scheefhals, Nicky N; Mertens, Eline E; Catsburg, Lisa A E LAE; Poorthuis, Rogier B RB; de Winter, Fred F; Verhaagen, Joost J; Meye, Frank J FJ; MacGillavry, Harold D HD

Publication Date: 2020-04

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PubMed Link: 32275651

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• Main text
• pbio.3000665.pdf

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Label-free whole-colony imaging and metabolic analysis of metastatic pancreatic cancer by an autoregulating flexible optical system.

Theranostics

Shen, Binglin B; Yan, Junshuai J; Wang, Shiqi S; Zhou, Feifan F; Zhao, Yihua Y; Hu, Rui R; Qu, Junle J; Liu, Liwei L

Publication Date: 2020

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PubMed Link: 32042340

Variant Present in the following documents:

• thnov10p1849s1.pdf

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Microglia response following acute demyelination is heterogeneous and limits infiltrating macrophage dispersion.

Science Advances

Plemel, Jason R JR; Stratton, Jo Anne JA; Michaels, Nathan J NJ; Rawji, Khalil S KS; Zhang, Eric E; Sinha, Sarthak S; Baaklini, Charbel S CS; Dong, Yifei Y; Ho, Madelene M; Thorburn, Kevin K; Friedman, Timothy N TN; Jawad, Sana S; Silva, Claudia C; Caprariello, Andrew V AV; Hoghooghi, Vahid V; Yue, Julie J; Jaffer, Arzina A; Lee, Kelly K; Kerr, Bradley J BJ; Midha, Raj R; Stys, Peter K PK; Biernaskie, Jeff J; Yong, V Wee VW

Publication Date: 2020-01

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PubMed Link: 31998844

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High-Affinity Bent β2-Integrin Molecules in Arresting Neutrophils Face Each Other through Binding to ICAMs In cis.

Cell Reports

Fan, Zhichao Z; Kiosses, William Bill WB; Sun, Hao H; Orecchioni, Marco M; Ghosheh, Yanal Y; Zajonc, Dirk M DM; Arnaout, M Amin MA; Gutierrez, Edgar E; Groisman, Alex A; Ginsberg, Mark H MH; Ley, Klaus K

Publication Date: 2019-01-02

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PubMed Link: 30605669

Variant Present in the following documents:

• nihms-1517861.pdf

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The Rényi divergence enables accurate and precise cluster analysis for localization microscopy.

Bioinformatics (Oxford, England)

Staszowska, Adela D AD; Fox-Roberts, Patrick P; Hirvonen, Liisa M LM; Peddie, Christopher J CJ; Collinson, Lucy M LM; Jones, Gareth E GE; Cox, Susan S

Publication Date: 2018-12-01

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PubMed Link: 29868717

Variant Present in the following documents:

• bty403.pdf

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Optical computed tomography for spatially isotropic four-dimensional imaging of live single cells.

Science Advances

Kelbauskas, Laimonas L; Shetty, Rishabh R; Cao, Bin B; Wang, Kuo-Chen KC; Smith, Dean D; Wang, Hong H; Chao, Shi-Hui SH; Gangaraju, Sandhya S; Ashcroft, Brian B; Kritzer, Margaret M; Glenn, Honor H; Johnson, Roger H RH; Meldrum, Deirdre R DR

Publication Date: 2017-12

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PubMed Link: 29226240

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• Main text
• 1602580.pdf

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Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Nucleic Acids Research

Cui, Yi Y; Hu, Dehong D; Markillie, Lye Meng LM; Chrisler, William B WB; Gaffrey, Matthew J MJ; Ansong, Charles C; Sussel, Lori L; Orr, Galya G

Publication Date: 2018-01-25

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PubMed Link: 29040675

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• Main text
• gkx874.pdf

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Fast super-resolution imaging with ultra-high labeling density achieved by joint tagging super-resolution optical fluctuation imaging.

Scientific Reports

Zeng, Zhiping Z; Chen, Xuanze X; Wang, Hening H; Huang, Ning N; Shan, Chunyan C; Zhang, Hao H; Teng, Junlin J; Xi, Peng P

Publication Date: 2015-02-10

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PubMed Link: 25665878

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• srep08359-s1.pdf

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Super-resolution fluorescence of huntingtin reveals growth of globular species into short fibers and coexistence of distinct aggregates.

Acs Chemical Biology

Duim, Whitney C WC; Jiang, Yan Y; Shen, Koning K; Frydman, Judith J; Moerner, W E WE

Publication Date: 2014-12-19

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PubMed Link: 25330023

Variant Present in the following documents:

• cb500335w.pdf

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Interplay of the serine/threonine-kinase StkP and the paralogs DivIVA and GpsB in pneumococcal cell elongation and division.

Plos Genetics

Fleurie, Aurore A; Manuse, Sylvie S; Zhao, Chao C; Campo, Nathalie N; Cluzel, Caroline C; Lavergne, Jean-Pierre JP; Freton, Céline C; Combet, Christophe C; Guiral, Sébastien S; Soufi, Boumediene B; Macek, Boris B; Kuru, Erkin E; VanNieuwenhze, Michael S MS; Brun, Yves V YV; Di Guilmi, Anne-Marie AM; Claverys, Jean-Pierre JP; Galinier, Anne A; Grangeasse, Christophe C

Publication Date: 2014-04

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PubMed Link: 24722178

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• Main text
• pgen.1004275.pdf

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Recruitment, assembly, and molecular architecture of the SpoIIIE DNA pump revealed by superresolution microscopy.

Plos Biology

Fiche, Jean-Bernard JB; Cattoni, Diego I DI; Diekmann, Nele N; Langerak, Julio Mateos JM; Clerte, Caroline C; Royer, Catherine A CA; Margeat, Emmanuel E; Doan, Thierry T; Nöllmann, Marcelo M

Publication Date: 2013

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PubMed Link: 23667326

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• Main text
• pbio.1001557.pdf

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Genomics and localization of the Arabidopsis DHHC-cysteine-rich domain S-acyltransferase protein family.

Plant Physiology

Batistic, Oliver O

Publication Date: 2012-11

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PubMed Link: 22968831

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