Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues.
Nature Communications
Abelin, Jennifer G JG; Bergstrom, Erik J EJ; Rivera, Keith D KD; Taylor, Hannah B HB; Klaeger, Susan S; Xu, Charles C; Verzani, Eva K EK; Jackson White, C C; Woldemichael, Hilina B HB; Virshup, Maya M; Olive, Meagan E ME; Maynard, Myranda M; Vartany, Stephanie A SA; Allen, Joseph D JD; Phulphagar, Kshiti K; Harry Kane, M M; Rachimi, Suzanna S; Mani, D R DR; Gillette, Michael A MA; Satpathy, Shankha S; Clauser, Karl R KR; Udeshi, Namrata D ND; Carr, Steven A SA
Stroke genetics informs drug discovery and risk prediction across ancestries.
Nature
Mishra, Aniket A; Malik, Rainer R; Hachiya, Tsuyoshi T; Jürgenson, Tuuli T; Namba, Shinichi S; Posner, Daniel C DC; Kamanu, Frederick K FK; Koido, Masaru M; Le Grand, Quentin Q; Shi, Mingyang M; He, Yunye Y; Georgakis, Marios K MK; Caro, Ilana I; Krebs, Kristi K; Liaw, Yi-Ching YC; Vaura, Felix C FC; Lin, Kuang K; Winsvold, Bendik Slagsvold BS; Srinivasasainagendra, Vinodh V; Parodi, Livia L; Bae, Hee-Joon HJ; Chauhan, Ganesh G; Chong, Michael R MR; Tomppo, Liisa L; Akinyemi, Rufus R; Roshchupkin, Gennady V GV; Habib, Naomi N; Jee, Yon Ho YH; Thomassen, Jesper Qvist JQ; Abedi, Vida V; Cárcel-Márquez, Jara J; Nygaard, Marianne M; Leonard, Hampton L HL; Yang, Chaojie C; Yonova-Doing, Ekaterina E; Knol, Maria J MJ; Lewis, Adam J AJ; Judy, Renae L RL; Ago, Tetsuro T; Amouyel, Philippe P; Armstrong, Nicole D ND; Bakker, Mark K MK; Bartz, Traci M TM; Bennett, David A DA; Bis, Joshua C JC; Bordes, Constance C; Børte, Sigrid S; Cain, Anael A; Ridker, Paul M PM; Cho, Kelly K; Chen, Zhengming Z; Cruchaga, Carlos C; Cole, John W JW; de Jager, Phil L PL; de Cid, Rafael R; Endres, Matthias M; Ferreira, Leslie E LE; Geerlings, Mirjam I MI; Gasca, Natalie C NC; Gudnason, Vilmundur V; Hata, Jun J; He, Jing J; Heath, Alicia K AK; Ho, Yuk-Lam YL; Havulinna, Aki S AS; Hopewell, Jemma C JC; Hyacinth, Hyacinth I HI; Inouye, Michael M; Jacob, Mina A MA; Jeon, Christina E CE; Jern, Christina C; Kamouchi, Masahiro M; Keene, Keith L KL; Kitazono, Takanari T; Kittner, Steven J SJ; Konuma, Takahiro T; Kumar, Amit A; Lacaze, Paul P; Launer, Lenore J LJ; Lee, Keon-Joo KJ; Lepik, Kaido K; Li, Jiang J; Li, Liming L; Manichaikul, Ani A; Markus, Hugh S HS; Marston, Nicholas A NA; Meitinger, Thomas T; Mitchell, Braxton D BD; Montellano, Felipe A FA; Morisaki, Takayuki T; Mosley, Thomas H TH; Nalls, Mike A MA; Nordestgaard, Børge G BG; O'Donnell, Martin J MJ; Okada, Yukinori Y; Onland-Moret, N Charlotte NC; Ovbiagele, Bruce B; Peters, Annette A; Psaty, Bruce M BM; Rich, Stephen S SS; Rosand, Jonathan J; Sabatine, Marc S MS; Sacco, Ralph L RL; Saleheen, Danish D; Sandset, Else Charlotte EC; Salomaa, Veikko V; Sargurupremraj, Muralidharan M; Sasaki, Makoto M; Satizabal, Claudia L CL; Schmidt, Carsten O CO; Shimizu, Atsushi A; Smith, Nicholas L NL; Sloane, Kelly L KL; Sutoh, Yoichi Y; Sun, Yan V YV; Tanno, Kozo K; Tiedt, Steffen S; Tatlisumak, Turgut T; Torres-Aguila, Nuria P NP; Tiwari, Hemant K HK; Trégouët, David-Alexandre DA; Trompet, Stella S; Tuladhar, Anil Man AM; Tybjærg-Hansen, Anne A; van Vugt, Marion M; Vibo, Riina R; Verma, Shefali S SS; Wiggins, Kerri L KL; Wennberg, Patrik P; Woo, Daniel D; Wilson, Peter W F PWF; Xu, Huichun H; Yang, Qiong Q; Yoon, Kyungheon K; , ; , ; , ; , ; , ; , ; , ; , ; , ; , ; , ; , ; , ; , ; , ; Millwood, Iona Y IY; Gieger, Christian C; Ninomiya, Toshiharu T; Grabe, Hans J HJ; Jukema, J Wouter JW; Rissanen, Ina L IL; Strbian, Daniel D; Kim, Young Jin YJ; Chen, Pei-Hsin PH; Mayerhofer, Ernst E; Howson, Joanna M M JMM; Irvin, Marguerite R MR; Adams, Hieab H; Wassertheil-Smoller, Sylvia S; Christensen, Kaare K; Ikram, Mohammad A MA; Rundek, Tatjana T; Worrall, Bradford B BB; Lathrop, G Mark GM; Riaz, Moeen M; Simonsick, Eleanor M EM; Kõrv, Janika J; França, Paulo H C PHC; Zand, Ramin R; Prasad, Kameshwar K; Frikke-Schmidt, Ruth R; de Leeuw, Frank-Erik FE; Liman, Thomas T; Haeusler, Karl Georg KG; Ruigrok, Ynte M YM; Heuschmann, Peter Ulrich PU; Longstreth, W T WT; Jung, Keum Ji KJ; Bastarache, Lisa L; Paré, Guillaume G; Damrauer, Scott M SM; Chasman, Daniel I DI; Rotter, Jerome I JI; Anderson, Christopher D CD; Zwart, John-Anker JA; Niiranen, Teemu J TJ; Fornage, Myriam M; Liaw, Yung-Po YP; Seshadri, Sudha S; Fernández-Cadenas, Israel I; Walters, Robin G RG; Ruff, Christian T CT; Owolabi, Mayowa O MO; Huffman, Jennifer E JE; Milani, Lili L; Kamatani, Yoichiro Y; Dichgans, Martin M; Debette, Stephanie S
Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities.
Nature Communications
Nichols, Caitlin A CA; Gibson, William J WJ; Brown, Meredith S MS; Kosmicki, Jack A JA; Busanovich, John P JP; Wei, Hope H; Urbanski, Laura M LM; Curimjee, Naomi N; Berger, Ashton C AC; Gao, Galen F GF; Cherniack, Andrew D AD; Dhe-Paganon, Sirano S; Paolella, Brenton R BR; Beroukhim, Rameen R
Publication Date: 2020-05-20
Variant appearance in text: WDR12: 223A>G; Ile75Val; rs35212307
Distinctive mutational spectrum and karyotype disruption in long-term cisplatin-treated urothelial carcinoma cell lines.
Scientific Reports
Skowron, Margaretha A MA; Petzsch, Patrick P; Hardt, Karin K; Wagner, Nicholas N; Beier, Manfred M; Stepanow, Stefanie S; Drechsler, Matthias M; Rieder, Harald H; Köhrer, Karl K; Niegisch, Günter G; Hoffmann, Michèle J MJ; Schulz, Wolfgang A WA
Publication Date: 2019-10-09
Variant appearance in text: WDR12: I75V; rs35212307
Genome-wide association study of cerebral small vessel disease reveals established and novel loci.
Brain : A Journal Of Neurology
Chung, Jaeyoon J; Marini, Sandro S; Pera, Joanna J; Norrving, Bo B; Jimenez-Conde, Jordi J; Roquer, Jaume J; Fernandez-Cadenas, Israel I; Tirschwell, David L DL; Selim, Magdy M; Brown, Devin L DL; Silliman, Scott L SL; Worrall, Bradford B BB; Meschia, James F JF; Demel, Stacie S; Greenberg, Steven M SM; Slowik, Agnieszka A; Lindgren, Arne A; Schmidt, Reinhold R; Traylor, Matthew M; Sargurupremraj, Muralidharan M; Tiedt, Steffen S; Malik, Rainer R; Debette, Stéphanie S; Dichgans, Martin M; Langefeld, Carl D CD; Woo, Daniel D; Rosand, Jonathan J; Anderson, Christopher D CD
Publication Date: 2019-10-01
Variant appearance in text: WDR12: I75V; rs35212307
A reference collection of patient-derived cell line and xenograft models of proneural, classical and mesenchymal glioblastoma.
Scientific Reports
Stringer, Brett W BW; Day, Bryan W BW; D'Souza, Rochelle C J RCJ; Jamieson, Paul R PR; Ensbey, Kathleen S KS; Bruce, Zara C ZC; Lim, Yi Chieh YC; Goasdoué, Kate K; Offenhäuser, Carolin C; Akgül, Seçkin S; Allan, Suzanne S; Robertson, Thomas T; Lucas, Peter P; Tollesson, Gert G; Campbell, Scott S; Winter, Craig C; Do, Hongdo H; Dobrovic, Alexander A; Inglis, Po-Ling PL; Jeffree, Rosalind L RL; Johns, Terrance G TG; Boyd, Andrew W AW
Publication Date: 2019-03-20
Variant appearance in text: WDR12: I75V; rs35212307
Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases.
Cell Death & Disease
Grassi, Ludovica L; Alfonsi, Romina R; Francescangeli, Federica F; Signore, Michele M; De Angelis, Maria Laura ML; Addario, Antonio A; Costantini, Manuela M; Flex, Elisabetta E; Ciolfi, Andrea A; Pizzi, Simone S; Bruselles, Alessandro A; Pallocca, Matteo M; Simone, Giuseppe G; Haoui, Mustapha M; Falchi, Mario M; Milella, Michele M; Sentinelli, Steno S; Di Matteo, Paola P; Stellacci, Emilia E; Gallucci, Michele M; Muto, Giovanni G; Tartaglia, Marco M; De Maria, Ruggero R; Bonci, Désirée D
Publication Date: 2019-02-27
Variant appearance in text: WDR12: 223A>G; rs35212307
Exome Chip Analysis Identifies Low-Frequency and Rare Variants in MRPL38 for White Matter Hyperintensities on Brain Magnetic Resonance Imaging.
Stroke
Jian, Xueqiu X; Satizabal, Claudia L CL; Smith, Albert V AV; Wittfeld, Katharina K; Bis, Joshua C JC; Smith, Jennifer A JA; Hsu, Fang-Chi FC; Nho, Kwangsik K; Hofer, Edith E; Hagenaars, Saskia P SP; Nyquist, Paul A PA; Mishra, Aniket A; Adams, Hieab H H HHH; Li, Shuo S; Teumer, Alexander A; Zhao, Wei W; Freedman, Barry I BI; Saba, Yasaman Y; Yanek, Lisa R LR; Chauhan, Ganesh G; van Buchem, Mark A MA; Cushman, Mary M; Royle, Natalie A NA; Bryan, R Nick RN; Niessen, Wiro J WJ; Windham, Beverly G BG; DeStefano, Anita L AL; Habes, Mohamad M; Heckbert, Susan R SR; Palmer, Nicholette D ND; Lewis, Cora E CE; Eiriksdottir, Gudny G; Maillard, Pauline P; Mathias, Rasika A RA; Homuth, Georg G; Valdés-Hernández, Maria Del C MDC; Divers, Jasmin J; Beiser, Alexa S AS; Langner, Sönke S; Rice, Kenneth M KM; Bastin, Mark E ME; Yang, Qiong Q; Maldjian, Joseph A JA; Starr, John M JM; Sidney, Stephen S; Risacher, Shannon L SL; Uitterlinden, André G AG; Gudnason, Vilmundur G VG; Nauck, Matthias M; Rotter, Jerome I JI; Schreiner, Pamela J PJ; Boerwinkle, Eric E; van Duijn, Cornelia M CM; Mazoyer, Bernard B; von Sarnowski, Bettina B; Gottesman, Rebecca F RF; Levy, Daniel D; Sigurdsson, Sigurdur S; Vernooij, Meike W MW; Turner, Stephen T ST; Schmidt, Reinhold R; Wardlaw, Joanna M JM; Psaty, Bruce M BM; Mosley, Thomas H TH; DeCarli, Charles S CS; Saykin, Andrew J AJ; Bowden, Donald W DW; Becker, Diane M DM; Deary, Ian J IJ; Schmidt, Helena H; Kardia, Sharon L R SLR; Ikram, M Arfan MA; Debette, Stéphanie S; Grabe, Hans J HJ; Longstreth, W T WT; Seshadri, Sudha S; Launer, Lenore J LJ; Fornage, Myriam M; ,
Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow.
Nature Communications
Zhu, Yafeng Y; Orre, Lukas M LM; Johansson, Henrik J HJ; Huss, Mikael M; Boekel, Jorrit J; Vesterlund, Mattias M; Fernandez-Woodbridge, Alejandro A; Branca, Rui M M RMM; Lehtiö, Janne J
Miller, Clint L CL; Pjanic, Milos M; Wang, Ting T; Nguyen, Trieu T; Cohain, Ariella A; Lee, Jonathan D JD; Perisic, Ljubica L; Hedin, Ulf U; Kundu, Ramendra K RK; Majmudar, Deshna D; Kim, Juyong B JB; Wang, Oliver O; Betsholtz, Christer C; Ruusalepp, Arno A; Franzén, Oscar O; Assimes, Themistocles L TL; Montgomery, Stephen B SB; Schadt, Eric E EE; Björkegren, Johan L M JLM; Quertermous, Thomas T
Genetic analysis for a shared biological basis between migraine and coronary artery disease.
Neurology. Genetics
Winsvold, Bendik S BS; Nelson, Christopher P CP; Malik, Rainer R; Gormley, Padhraig P; Anttila, Verneri V; Vander Heiden, Jason J; Elliott, Katherine S KS; Jacobsen, Line M LM; Palta, Priit P; Amin, Najaf N; de Vries, Boukje B; Hämäläinen, Eija E; Freilinger, Tobias T; Ikram, M Arfan MA; Kessler, Thorsten T; Koiranen, Markku M; Ligthart, Lannie L; McMahon, George G; Pedersen, Linda M LM; Willenborg, Christina C; Won, Hong-Hee HH; Olesen, Jes J; Artto, Ville V; Assimes, Themistocles L TL; Blankenberg, Stefan S; Boomsma, Dorret I DI; Cherkas, Lynn L; Davey Smith, George G; Epstein, Stephen E SE; Erdmann, Jeanette J; Ferrari, Michel D MD; Göbel, Hartmut H; Hall, Alistair S AS; Jarvelin, Marjo-Riitta MR; Kallela, Mikko M; Kaprio, Jaakko J; Kathiresan, Sekar S; Lehtimäki, Terho T; McPherson, Ruth R; März, Winfried W; Nyholt, Dale R DR; O'Donnell, Christopher J CJ; Quaye, Lydia L; Rader, Daniel J DJ; Raitakari, Olli O; Roberts, Robert R; Schunkert, Heribert H; Schürks, Markus M; Stewart, Alexandre F R AF; Terwindt, Gisela M GM; Thorsteinsdottir, Unnur U; van den Maagdenberg, Arn M J M AM; van Duijn, Cornelia C; Wessman, Maija M; Kurth, Tobias T; Kubisch, Christian C; Dichgans, Martin M; Chasman, Daniel I DI; Cotsapas, Chris C; Zwart, John-Anker JA; Samani, Nilesh J NJ; Palotie, Aarno A; ,
Generation of a High Number of Healthy Erythroid Cells from Gene-Edited Pyruvate Kinase Deficiency Patient-Specific Induced Pluripotent Stem Cells.
Stem Cell Reports
Garate, Zita Z; Quintana-Bustamante, Oscar O; Crane, Ana M AM; Olivier, Emmanuel E; Poirot, Laurent L; Galetto, Roman R; Kosinski, Penelope P; Hill, Collin C; Kung, Charles C; Agirre, Xabi X; Orman, Israel I; Cerrato, Laura L; Alberquilla, Omaira O; Rodriguez-Fornes, Fatima F; Fusaki, Noemi N; Garcia-Sanchez, Felix F; Maia, Tabita M TM; Ribeiro, Maria L ML; Sevilla, Julian J; Prosper, Felipe F; Jin, Shengfang S; Mountford, Joanne J; Guenechea, Guillermo G; Gouble, Agnes A; Bueren, Juan A JA; Davis, Brian R BR; Segovia, Jose C JC
Publication Date: 2015-12-08
Variant appearance in text: WDR12: I75V; rs35212307
Prediction of Causal Candidate Genes in Coronary Artery Disease Loci.
Arteriosclerosis, Thrombosis, And Vascular Biology
Brænne, Ingrid I; Civelek, Mete M; Vilne, Baiba B; Di Narzo, Antonio A; Johnson, Andrew D AD; Zhao, Yuqi Y; Reiz, Benedikt B; Codoni, Veronica V; Webb, Thomas R TR; Foroughi Asl, Hassan H; Hamby, Stephen E SE; Zeng, Lingyao L; Trégouët, David-Alexandre DA; Hao, Ke K; Topol, Eric J EJ; Schadt, Eric E EE; Yang, Xia X; Samani, Nilesh J NJ; Björkegren, Johan L M JL; Erdmann, Jeanette J; Schunkert, Heribert H; Lusis, Aldons J AJ; ,
Publication Date: 2015-10
Variant appearance in text: WDR12: I75V; rs35212307
Whole-genome sequencing of the world's oldest people.
Plos One
Gierman, Hinco J HJ; Fortney, Kristen K; Roach, Jared C JC; Coles, Natalie S NS; Li, Hong H; Glusman, Gustavo G; Markov, Glenn J GJ; Smith, Justin D JD; Hood, Leroy L; Coles, L Stephen LS; Kim, Stuart K SK
Publication Date: 2014
Variant appearance in text: WDR12: I75V; rs35212307
NCI-60 whole exome sequencing and pharmacological CellMiner analyses.
Plos One
Reinhold, William C WC; Varma, Sudhir S; Sousa, Fabricio F; Sunshine, Margot M; Abaan, Ogan D OD; Davis, Sean R SR; Reinhold, Spencer W SW; Kohn, Kurt W KW; Morris, Joel J; Meltzer, Paul S PS; Doroshow, James H JH; Pommier, Yves Y
Publication Date: 2014
Variant appearance in text: WDR12: I75V; rs35212307