Publications:

---

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: PIK3CA: 281T>C

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

---

Identification of Immune-Related Gene Signatures in Lung Adenocarcinoma and Lung Squamous Cell Carcinoma.

Frontiers In Immunology

Li, Na N; Wang, Jiahong J; Zhan, Xianquan X

Publication Date: 2021

Variant appearance in text: PIK3CA: 281T>C; L94P

PubMed Link: 34887858

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

View BVdb publication page

---

Therapeutic management of neuro-oncologic patients - potential relevance of CSF liquid biopsy.

Theranostics

von Baumgarten, Louisa L; Kumbrink, Jörg J; Jung, Andreas A; Reischer, Anna A; Flach, Madeleine M; Liebmann, Sibylle S; Metzeler, Klaus H KH; Holch, Julian W JW; Niyazi, Maximilian M; Thon, Niklas N; Straube, Andreas A; von Bergwelt-Baildon, Michael M; Heinemann, Volker V; Kirchner, Thomas T; Westphalen, Christoph Benedikt CB

Publication Date: 2020

Variant appearance in text: PIK3CA: 281T>C; Leu94Pro

PubMed Link: 31903155

Variant Present in the following documents:

• thnov10p0856s1.pdf

View BVdb publication page

---

ITK inhibition induced in vitro and in vivo anti-tumor activity through downregulating TCR signaling pathway in malignant T cell lymphoma.

Cancer Cell International

Liu, Yalu Y; Wang, Xiaogan X; Deng, Lijuan L; Ping, Lingyan L; Shi, Yunfei Y; Zheng, Wen W; Lin, Ningjing N; Wang, Xiaopei X; Tu, Meifeng M; Xie, Yan Y; Liu, Weiping W; Ying, Zhitao Z; Zhang, Chen C; Pan, Zhengying Z; Wang, Xi X; Ding, Ning N; Song, Yuqin Y; Zhu, Jun J

Publication Date: 2019

Variant appearance in text: PIK3CA: L94P

PubMed Link: 30814910

Variant Present in the following documents:

• Main text
• 12935_2019_Article_754.pdf

View BVdb publication page

---

Applying Precision Medicine to Ovarian Cancer: Proof-of-Principle for a "Molecular Second Look".

International Journal Of Gynecological Cancer : Official Journal Of The International Gynecological Cancer Society

Schwartz, Melissa M; Camacho-Vanegas, Olga O; Wood, Ashley M AM; Dashkoff, Matthew M; Whitelock, Courtney C; Harkins, Timothy T TT; Cohen, Carmel J CJ; Beddoe, Ann Marie AM; Dottino, Peter P; Martignetti, John A JA

Publication Date: 2018-03

Variant appearance in text: PIK3CA: L94P

PubMed Link: 29324546

Variant Present in the following documents:

• igj-28-479.pdf

View BVdb publication page

---

Circulating tumour DNA sequence analysis as an alternative to multiple myeloma bone marrow aspirates.

Nature Communications

Kis, Olena O; Kaedbey, Rayan R; Chow, Signy S; Danesh, Arnavaz A; Dowar, Mark M; Li, Tiantian T; Li, Zhihua Z; Liu, Jessica J; Mansour, Mark M; Masih-Khan, Esther E; Zhang, Tong T; Bratman, Scott V SV; Oza, Amit M AM; Kamel-Reid, Suzanne S; Trudel, Suzanne S; Pugh, Trevor J TJ

Publication Date: 2017-05-11

Variant appearance in text: PI3K: 281T>C

PubMed Link: 28492226

Variant Present in the following documents:

• ncomms15086-s3.xlsx, sheet 1

View BVdb publication page

---

Genomic Analysis of Uterine Lavage Fluid Detects Early Endometrial Cancers and Reveals a Prevalent Landscape of Driver Mutations in Women without Histopathologic Evidence of Cancer: A Prospective Cross-Sectional Study.

Plos Medicine

Nair, Navya N; Camacho-Vanegas, Olga O; Rykunov, Dmitry D; Dashkoff, Matthew M; Camacho, Sandra Catalina SC; Schumacher, Cassie A CA; Irish, Jonathan C JC; Harkins, Timothy T TT; Freeman, Elijah E; Garcia, Isaac I; Pereira, Elena E; Kendall, Sviatoslav S; Belfer, Rachel R; Kalir, Tamara T; Sebra, Robert R; Reva, Boris B; Dottino, Peter P; Martignetti, John A JA

Publication Date: 2016-12

Variant appearance in text: PIK3CA: L94P

PubMed Link: 28027320

Variant Present in the following documents:

• pmed.1002206.s015.xlsx, sheet 3
• pmed.1002206.s017.xlsx, sheet 1

View BVdb publication page

---

VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.

Nucleic Acids Research

Lai, Zhongwu Z; Markovets, Aleksandra A; Ahdesmaki, Miika M; Chapman, Brad B; Hofmann, Oliver O; McEwen, Robert R; Johnson, Justin J; Dougherty, Brian B; Barrett, J Carl JC; Dry, Jonathan R JR

Publication Date: 2016-06-20

Variant appearance in text: PIK3CA: 281T>C; L94P

PubMed Link: 27060149

Variant Present in the following documents:

• supp_gkw227_nar-03544-met-k-2015-File003.xls, sheet 2

View BVdb publication page

---

Amplicon sequencing of colorectal cancer: variant calling in frozen and formalin-fixed samples.

Plos One

Betge, Johannes J; Kerr, Grainne G; Miersch, Thilo T; Leible, Svenja S; Erdmann, Gerrit G; Galata, Christian L CL; Zhan, Tianzuo T; Gaiser, Timo T; Post, Stefan S; Ebert, Matthias P MP; Horisberger, Karoline K; Boutros, Michael M

Publication Date: 2015

Variant appearance in text: PIK3CA: L94P

PubMed Link: 26010451

Variant Present in the following documents:

• pone.0127146.s014.xlsx, sheet 3

View BVdb publication page

---

Comprehensive molecular profiling of lung adenocarcinoma.

Nature

,

Publication Date: 2014-07-31

Variant appearance in text: PIK3CA: L94P

PubMed Link: 25079552

Variant Present in the following documents:

• NIHMS629713-supplement-Supllementary_information_2.xlsx, sheet 7

View BVdb publication page

---