Publications:

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Identification of relevant genetic alterations in cancer using topological data analysis.

Nature Communications

Rabadán, Raúl R; Mohamedi, Yamina Y; Rubin, Udi U; Chu, Tim T; Alghalith, Adam N AN; Elliott, Oliver O; Arnés, Luis L; Cal, Santiago S; Obaya, Álvaro J ÁJ; Levine, Arnold J AJ; Cámara, Pablo G PG

Publication Date: 2020-07-30

Variant appearance in text: PIK3CA: W1051*

PubMed Link: 32732999

Variant Present in the following documents:

• 41467_2020_17659_MOESM3_ESM.xls, sheet 1

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The distinct clinicopathological and prognostic implications of PIK3CA mutations in breast cancer patients from Central China.

Cancer Management And Research

Wu, Haibo H; Wang, Wei W; Du, Jun J; Li, Hong H; Wang, Huogang H; Huang, Liangliang L; Xiang, Hang H; Xie, Jing J; Liu, Xiaoli X; Li, Heng H; Lin, Wenchu W

Publication Date: 2019

Variant appearance in text: PIK3CA: 3153G>A

PubMed Link: 30863158

Variant Present in the following documents:

• Main text
• cmar-11-1473.pdf

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Targeted mutation detection in breast cancer using MammaSeq™.

Breast Cancer Research : Bcr

Smith, Nicholas G NG; Gyanchandani, Rekha R; Shah, Osama S OS; Gurda, Grzegorz T GT; Lucas, Peter C PC; Hartmaier, Ryan J RJ; Brufsky, Adam M AM; Puhalla, Shannon S; Bahreini, Amir A; Kota, Karthik K; Wald, Abigail I AI; Nikiforov, Yuri E YE; Nikiforova, Marina N MN; Oesterreich, Steffi S; Lee, Adrian V AV

Publication Date: 2019-02-08

Variant appearance in text: PIK3CA: W1051*

PubMed Link: 30736836

Variant Present in the following documents:

• 13058_2019_1102_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Formalin fixation increases deamination mutation signature but should not lead to false positive mutations in clinical practice.

Plos One

Prentice, Leah M LM; Miller, Ruth R RR; Knaggs, Jeff J; Mazloomian, Alborz A; Aguirre Hernandez, Rosalia R; Franchini, Patrick P; Parsa, Kourosh K; Tessier-Cloutier, Basile B; Lapuk, Anna A; Huntsman, David D; Schaeffer, David F DF; Sheffield, Brandon S BS

Publication Date: 2018

Variant appearance in text: PIK3CA: W1051*

PubMed Link: 29698444

Variant Present in the following documents:

• pone.0196434.s001.xlsx, sheet 3
• pone.0196434.s001.xlsx, sheet 2
• pone.0196434.s001.xlsx, sheet 1

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Prognostic and histogenetic roles of gene alteration and the expression of key potentially actionable targets in salivary duct carcinomas.

Oncotarget

Shimura, Tomotaka T; Tada, Yuichiro Y; Hirai, Hideaki H; Kawakita, Daisuke D; Kano, Satoshi S; Tsukahara, Kiyoaki K; Shimizu, Akira A; Takase, Soichiro S; Imanishi, Yorihisa Y; Ozawa, Hiroyuki H; Okami, Kenji K; Sato, Yuichiro Y; Sato, Yukiko Y; Fushimi, Chihiro C; Takahashi, Hideaki H; Okada, Takuro T; Sato, Hiroki H; Otsuka, Kuninori K; Watanabe, Yoshihiro Y; Sakai, Akihiro A; Ebisumoto, Koji K; Togashi, Takafumi T; Ueki, Yushi Y; Ota, Hisayuki H; Ando, Mizuo M; Kohsaka, Shinji S; Hanazawa, Toyoyuki T; Chazono, Hideaki H; Kadokura, Yoshiyuki Y; Kobayashi, Hitome H; Nagao, Toshitaka T

Publication Date: 2018-01-05

Variant appearance in text: PIK3CA: 3153G>A

PubMed Link: 29416736

Variant Present in the following documents:

• oncotarget-09-1852-s001.pdf

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Targeted exome sequencing reveals distinct pathogenic variants in Iranians with colorectal cancer.

Oncotarget

Ashktorab, Hassan H; Mokarram, Pooneh P; Azimi, Hamed H; Olumi, Hasti H; Varma, Sudhir S; Nickerson, Michael L ML; Brim, Hassan H

Publication Date: 2017-01-31

Variant appearance in text: PIK3CA: W1051X

PubMed Link: 28002797

Variant Present in the following documents:

• oncotarget-08-7852-s002.xlsx, sheet 19

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Frequency and clinicopathologic profile of PIK3CA mutant GISTs: molecular genetic study of 529 cases.

Modern Pathology : An Official Journal Of The United States And Canadian Academy Of Pathology, Inc

Lasota, Jerzy J; Felisiak-Golabek, Anna A; Wasag, Bartosz B; Kowalik, Artur A; Zięba, Sebastian S; Chłopek, Małgorzata M; Wang, Zeng-Feng ZF; Coates, Tiffany T; Kopczynski, Janusz J; Gozdz, Stanislaw S; Sarlomo-Rikala, Maarit M; Miettinen, Markku M

Publication Date: 2016-03

Variant appearance in text: PIK3CA: 3153G>A

PubMed Link: 26796526

Variant Present in the following documents:

• Main text

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Amplicon sequencing of colorectal cancer: variant calling in frozen and formalin-fixed samples.

Plos One

Betge, Johannes J; Kerr, Grainne G; Miersch, Thilo T; Leible, Svenja S; Erdmann, Gerrit G; Galata, Christian L CL; Zhan, Tianzuo T; Gaiser, Timo T; Post, Stefan S; Ebert, Matthias P MP; Horisberger, Karoline K; Boutros, Michael M

Publication Date: 2015

Variant appearance in text: PIK3CA: W1051X

PubMed Link: 26010451

Variant Present in the following documents:

• pone.0127146.s014.xlsx, sheet 3

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Molecular profiling of single circulating tumor cells with diagnostic intention.

Embo Molecular Medicine

Polzer, Bernhard B; Medoro, Gianni G; Pasch, Sophie S; Fontana, Francesca F; Zorzino, Laura L; Pestka, Aurelia A; Andergassen, Ulrich U; Meier-Stiegen, Franziska F; Czyz, Zbigniew T ZT; Alberter, Barbara B; Treitschke, Steffi S; Schamberger, Thomas T; Sergio, Maximilian M; Bregola, Giulia G; Doffini, Anna A; Gianni, Stefano S; Calanca, Alex A; Signorini, Giulio G; Bolognesi, Chiara C; Hartmann, Arndt A; Fasching, Peter A PA; Sandri, Maria T MT; Rack, Brigitte B; Fehm, Tanja T; Giorgini, Giuseppe G; Manaresi, Nicolò N; Klein, Christoph A CA

Publication Date: 2014-11

Variant appearance in text: PIK3CA: W1051*

PubMed Link: 25358515

Variant Present in the following documents:

• emmm0006-1371-sd11.pdf

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PIK3CA, HRAS and PTEN in human papillomavirus positive oropharyngeal squamous cell carcinoma.

Bmc Cancer

Chiosea, Simion I SI; Grandis, Jennifer R JR; Lui, Vivian W Y VW; Diergaarde, Brenda B; Maxwell, Jessica H JH; Ferris, Robert L RL; Kim, Seungwon W SW; Luvison, Alyssa A; Miller, Megan M; Nikiforova, Marina N MN

Publication Date: 2013-12-17

Variant appearance in text: PIK3CA: 3153G>A

PubMed Link: 24341335

Variant Present in the following documents:

• Main text
• 1471-2407-13-602.pdf

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