Publications:

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A full-proteome, interaction-specific characterization of mutational hotspots across human cancers.

Genome Research

Chen, Siwei S; Liu, Yuan Y; Zhang, Yingying Y; Wierbowski, Shayne D SD; Lipkin, Steven M SM; Wei, Xiaomu X; Yu, Haiyuan H

Publication Date: 2022-01

Variant appearance in text: RHOA: Y66N

PubMed Link: 34963661

Variant Present in the following documents:

• supp_gr.275437.121_Supplementary_Table_1.xlsx, sheet 3

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Improvement of Neoantigen Identification Through Convolution Neural Network.

Frontiers In Immunology

Hao, Qing Q; Wei, Ping P; Shu, Yang Y; Zhang, Yi-Guan YG; Xu, Heng H; Zhao, Jun-Ning JN

Publication Date: 2021

Variant appearance in text: RHOA: Y66N

PubMed Link: 34113354

Variant Present in the following documents:

• Table_1.xlsx, sheet 21

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Model-based analysis uncovers mutations altering autophagy selectivity in human cancer.

Nature Communications

Han, Zhu Z; Zhang, Weizhi W; Ning, Wanshan W; Wang, Chenwei C; Deng, Wankun W; Li, Zhidan Z; Shang, Zehua Z; Shen, Xiaofei X; Liu, Xiaohui X; Baba, Otto O; Morita, Tsuyoshi T; Chen, Lu L; Xue, Yu Y; Jia, Da D

Publication Date: 2021-05-31

Variant appearance in text: RHOA: Y66N

PubMed Link: 34059679

Variant Present in the following documents:

• 41467_2021_23539_MOESM6_ESM.xlsx, sheet 1

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Spatially interacting phosphorylation sites and mutations in cancer.

Nature Communications

Huang, Kuan-Lin KL; Scott, Adam D AD; Zhou, Daniel Cui DC; Wang, Liang-Bo LB; Weerasinghe, Amila A; Elmas, Abdulkadir A; Liu, Ruiyang R; Wu, Yige Y; Wendl, Michael C MC; Wyczalkowski, Matthew A MA; Baral, Jessika J; Sengupta, Sohini S; Lai, Chin-Wen CW; Ruggles, Kelly K; Payne, Samuel H SH; Raphael, Benjamin B; Fenyö, David D; Chen, Ken K; Mills, Gordon G; Ding, Li L

Publication Date: 2021-04-19

Variant appearance in text: RHOA: Y66N

PubMed Link: 33875650

Variant Present in the following documents:

• 41467_2021_22481_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Interrogating Mutant Allele Expression via Customized Reference Genomes to Define Influential Cancer Mutations.

Scientific Reports

Grant, Adam D AD; Vail, Paris P; Padi, Megha M; Witkiewicz, Agnieszka K AK; Knudsen, Erik S ES

Publication Date: 2019-09-04

Variant appearance in text: RHOA: Y66N

PubMed Link: 31484939

Variant Present in the following documents:

• 41598_2019_48967_MOESM2_ESM.xls, sheet 1

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Comprehensive immunoproteogenomic analyses of malignant pleural mesothelioma.

Jci Insight

Lee, Hyun-Sung HS; Jang, Hee-Jin HJ; Choi, Jong Min JM; Zhang, Jun J; de Rosen, Veronica Lenge VL; Wheeler, Thomas M TM; Lee, Ju-Seog JS; Tu, Thuydung T; Jindra, Peter T PT; Kerman, Ronald H RH; Jung, Sung Yun SY; Kheradmand, Farrah F; Sugarbaker, David J DJ; Burt, Bryan M BM

Publication Date: 2018-04-05

Variant appearance in text: RHOA: Y66N

PubMed Link: 29618661

Variant Present in the following documents:

• jciinsight-3-98575-s002.xlsx, sheet 1

View BVdb publication page

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LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer.

Bmc Bioinformatics

Melloni, Giorgio E M GE; de Pretis, Stefano S; Riva, Laura L; Pelizzola, Mattia M; Céol, Arnaud A; Costanza, Jole J; Müller, Heiko H; Zammataro, Luca L

Publication Date: 2016-02-09

Variant appearance in text: RHOA: Y66N

PubMed Link: 26860319

Variant Present in the following documents:

• 12859_2016_935_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Gender-Specific Molecular and Clinical Features Underlie Malignant Pleural Mesothelioma.

Cancer Research

De Rienzo, Assunta A; Archer, Michael A MA; Yeap, Beow Y BY; Dao, Nhien N; Sciaranghella, Daniele D; Sideris, Antonios C AC; Zheng, Yifan Y; Holman, Alexander G AG; Wang, Yaoyu E YE; Dal Cin, Paola S PS; Fletcher, Jonathan A JA; Rubio, Renee R; Croft, Larry L; Quackenbush, John J; Sugarbaker, Peter E PE; Munir, Kiara J KJ; Battilana, Jesse R JR; Gustafson, Corinne E CE; Chirieac, Lucian R LR; Ching, Soo Meng SM; Wong, James J; Tay, Liang Chung LC; Rudd, Stephen S; Hercus, Robert R; Sugarbaker, David J DJ; Richards, William G WG; Bueno, Raphael R

Publication Date: 2016-01-15

Variant appearance in text: RHOA: Y66N

PubMed Link: 26554828

Variant Present in the following documents:

• Main text

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Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing.

Blood

Morin, Ryan D RD; Mungall, Karen K; Pleasance, Erin E; Mungall, Andrew J AJ; Goya, Rodrigo R; Huff, Ryan D RD; Scott, David W DW; Ding, Jiarui J; Roth, Andrew A; Chiu, Readman R; Corbett, Richard D RD; Chan, Fong Chun FC; Mendez-Lago, Maria M; Trinh, Diane L DL; Bolger-Munro, Madison M; Taylor, Greg G; Hadj Khodabakhshi, Alireza A; Ben-Neriah, Susana S; Pon, Julia J; Meissner, Barbara B; Woolcock, Bruce B; Farnoud, Noushin N; Rogic, Sanja S; Lim, Emilia L EL; Johnson, Nathalie A NA; Shah, Sohrab S; Jones, Steven S; Steidl, Christian C; Holt, Robert R; Birol, Inanc I; Moore, Richard R; Connors, Joseph M JM; Gascoyne, Randy D RD; Marra, Marco A MA

Publication Date: 2013-08-15

Variant appearance in text: RHOA: Y66N

PubMed Link: 23699601

Variant Present in the following documents:

• Main text

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