Spatially interacting phosphorylation sites and mutations in cancer.
Nature Communications
Huang, Kuan-Lin KL; Scott, Adam D AD; Zhou, Daniel Cui DC; Wang, Liang-Bo LB; Weerasinghe, Amila A; Elmas, Abdulkadir A; Liu, Ruiyang R; Wu, Yige Y; Wendl, Michael C MC; Wyczalkowski, Matthew A MA; Baral, Jessika J; Sengupta, Sohini S; Lai, Chin-Wen CW; Ruggles, Kelly K; Payne, Samuel H SH; Raphael, Benjamin B; Fenyö, David D; Chen, Ken K; Mills, Gordon G; Ding, Li L
The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers.
Cancer Cell
Razavi, Pedram P; Chang, Matthew T MT; Xu, Guotai G; Bandlamudi, Chaitanya C; Ross, Dara S DS; Vasan, Neil N; Cai, Yanyan Y; Bielski, Craig M CM; Donoghue, Mark T A MTA; Jonsson, Philip P; Penson, Alexander A; Shen, Ronglai R; Pareja, Fresia F; Kundra, Ritika R; Middha, Sumit S; Cheng, Michael L ML; Zehir, Ahmet A; Kandoth, Cyriac C; Patel, Ruchi R; Huberman, Kety K; Smyth, Lillian M LM; Jhaveri, Komal K; Modi, Shanu S; Traina, Tiffany A TA; Dang, Chau C; Zhang, Wen W; Weigelt, Britta B; Li, Bob T BT; Ladanyi, Marc M; Hyman, David M DM; Schultz, Nikolaus N; Robson, Mark E ME; Hudis, Clifford C; Brogi, Edi E; Viale, Agnes A; Norton, Larry L; Dickler, Maura N MN; Berger, Michael F MF; Iacobuzio-Donahue, Christine A CA; Chandarlapaty, Sarat S; Scaltriti, Maurizio M; Reis-Filho, Jorge S JS; Solit, David B DB; Taylor, Barry S BS; Baselga, José J
Pan-urologic cancer genomic subtypes that transcend tissue of origin.
Nature Communications
Chen, Fengju F; Zhang, Yiqun Y; Bossé, Dominick D; Lalani, Aly-Khan A AA; Hakimi, A Ari AA; Hsieh, James J JJ; Choueiri, Toni K TK; Gibbons, Don L DL; Ittmann, Michael M; Creighton, Chad J CJ
Sporadic Early-Onset Diffuse Gastric Cancers Have High Frequency of Somatic CDH1 Alterations, but Low Frequency of Somatic RHOA Mutations Compared With Late-Onset Cancers.
Gastroenterology
Cho, Soo Young SY; Park, Jun Won JW; Liu, Yang Y; Park, Young Soo YS; Kim, Ju Hee JH; Yang, Hanna H; Um, Hyejin H; Ko, Woo Ri WR; Lee, Byung Il BI; Kwon, Sun Young SY; Ryu, Seung Wan SW; Kwon, Chae Hwa CH; Park, Do Youn DY; Lee, Jae-Hyuk JH; Lee, Sang Il SI; Song, Kyu Sang KS; Hur, Hoon H; Han, Sang-Uk SU; Chang, Heekyung H; Kim, Su-Jin SJ; Kim, Byung-Sik BS; Yook, Jeong-Hwan JH; Yoo, Moon-Won MW; Kim, Beom-Su BS; Lee, In-Seob IS; Kook, Myeong-Cherl MC; Thiessen, Nina N; He, An A; Stewart, Chip C; Dunford, Andrew A; Kim, Jaegil J; Shih, Juliann J; Saksena, Gordon G; Cherniack, Andrew D AD; Schumacher, Steven S; Weiner, Amaro-Taylor AT; Rosenberg, Mara M; Getz, Gad G; Yang, Eun Gyeong EG; Ryu, Min-Hee MH; Bass, Adam J AJ; Kim, Hark Kyun HK
LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer.
Bmc Bioinformatics
Melloni, Giorgio E M GE; de Pretis, Stefano S; Riva, Laura L; Pelizzola, Mattia M; Céol, Arnaud A; Costanza, Jole J; Müller, Heiko H; Zammataro, Luca L