Publications:

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: 918G>T

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8

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Clinical utility of target amplicon sequencing test for rapid diagnosis of drug-resistant Mycobacterium tuberculosis from respiratory specimens.

Frontiers In Microbiology

Leung, Kenneth Siu-Sing KS; Tam, Kingsley King-Gee KK; Ng, Timothy Ting-Leung TT; Lao, Hiu-Yin HY; Shek, Raymond Chiu-Man RC; Ma, Oliver Chiu Kit OCK; Yu, Shi-Hui SH; Chen, Jing-Xian JX; Han, Qi Q; Siu, Gilman Kit-Hang GK; Yam, Wing-Cheong WC

Publication Date: 2022

Variant appearance in text: GC: M306I

PubMed Link: 36160212

Variant Present in the following documents:

• Main text
• fmicb-13-974428.pdf

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Detection of Minority Variants and Mixed Infections in Mycobacterium tuberculosis by Direct Whole-Genome Sequencing on Noncultured Specimens Using a Specific-DNA Capture Strategy.

Msphere

Lozano, Nuria N; Lanza, Val F VF; Suárez-González, Julia J; Herranz, Marta M; Sola-Campoy, Pedro J PJ; Rodríguez-Grande, Cristina C; Buenestado-Serrano, Sergio S; Ruiz-Serrano, María Jesús MJ; Tudó, Griselda G; Alcaide, Fernando F; Muñoz, Patricia P; García de Viedma, Darío D; Pérez-Lago, Laura L

Publication Date: 2021-12-15

Variant appearance in text: GC: M306I

PubMed Link: 34908457

Variant Present in the following documents:

• Main text
• msphere.00744-21.pdf

View BVdb publication page

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Detection of Minority Variants and Mixed Infections in Mycobacterium tuberculosis by Direct Whole-Genome Sequencing on Noncultured Specimens Using a Specific-DNA Capture Strategy.

Msphere

Lozano, Nuria N; Lanza, Val F VF; Suárez-González, Julia J; Herranz, Marta M; Sola-Campoy, Pedro J PJ; Rodríguez-Grande, Cristina C; Buenestado-Serrano, Sergio S; Ruiz-Serrano, María Jesús MJ; Tudó, Griselda G; Alcaide, Fernando F; Muñoz, Patricia P; García de Viedma, Darío D; Pérez-Lago, Laura L

Publication Date: 2021-12-22

Variant appearance in text: GC: M306I

PubMed Link: 34908457

Variant Present in the following documents:

• Main text
• msphere.00744-21.pdf

View BVdb publication page

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Estimated prevalence of mucopolysaccharidoses from population-based exomes and genomes.

Orphanet Journal Of Rare Diseases

Borges, Pâmella P; Pasqualim, Gabriela G; Giugliani, Roberto R; Vairo, Filippo F; Matte, Ursula U

Publication Date: 2020-11-18

Variant appearance in text: GC: 918G>T

PubMed Link: 33208168

Variant Present in the following documents:

• 13023_2020_1608_MOESM4_ESM.xlsx, sheet 11

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Genomic analysis of Latin American-Mediterranean family of Mycobacterium tuberculosis clinical strains from Kazakhstan.

Memorias Do Instituto Oswaldo Cruz

Tarlykov, Pavel P; Atavliyeva, Sabina S; Alenova, Arike A; Ramankulov, Yerlan Y

Publication Date: 2020

Variant appearance in text: GC: Met306Ile

PubMed Link: 32965331

Variant Present in the following documents:

• Main text

View BVdb publication page

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Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing.

Emerging Microbes & Infections

Perdigão, João J; Silva, Carla C; Maltez, Fernando F; Machado, Diana D; Miranda, Anabela A; Couto, Isabel I; Rabna, Paulo P; Florez de Sessions, Paola P; Phelan, Jody J; Pain, Arnab A; McNerney, Ruth R; Hibberd, Martin L ML; Mokrousov, Igor I; Clark, Taane G TG; Viveiros, Miguel M; Portugal, Isabel I

Publication Date: 2020-12

Variant appearance in text: GC: M306I

PubMed Link: 32538300

Variant Present in the following documents:

• Main text
• TEMI_9_1774425.pdf

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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.

Wellcome Open Research

Hunt, Martin M; Bradley, Phelim P; Lapierre, Simon Grandjean SG; Heys, Simon S; Thomsit, Mark M; Hall, Michael B MB; Malone, Kerri M KM; Wintringer, Penelope P; Walker, Timothy M TM; Cirillo, Daniela M DM; Comas, Iñaki I; Farhat, Maha R MR; Fowler, Phillip P; Gardy, Jennifer J; Ismail, Nazir N; Kohl, Thomas A TA; Mathys, Vanessa V; Merker, Matthias M; Niemann, Stefan S; Omar, Shaheed Vally SV; Sintchenko, Vitali V; Smith, Grace G; van Soolingen, Dick D; Supply, Philip P; Tahseen, Sabira S; Wilcox, Mark M; Arandjelovic, Irena I; Peto, Tim E A TEA; Crook, Derrick W DW; Iqbal, Zamin Z

Publication Date: 2019

Variant appearance in text: GC: M306I

PubMed Link: 32055708

Variant Present in the following documents:

• wellcomeopenres-4-17090.pdf

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Whole genome sequencing of drug resistant Mycobacterium tuberculosis isolates from a high burden tuberculosis region of North West Pakistan.

Scientific Reports

Jabbar, Abdul A; Phelan, Jody E JE; de Sessions, Paola Florez PF; Khan, Taj Ali TA; Rahman, Hazir H; Khan, Sadiq Noor SN; Cantillon, Daire M DM; Wildner, Leticia Muraro LM; Ali, Sajid S; Campino, Susana S; Waddell, Simon J SJ; Clark, Taane G TG

Publication Date: 2019-10-18

Variant appearance in text: GC: Met306Ile

PubMed Link: 31628383

Variant Present in the following documents:

• 41598_2019_Article_51562.pdf

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Identification of new putative driver mutations and predictors of disease evolution in chronic lymphocytic leukemia.

Blood Cancer Journal

Mosquera Orgueira, Adrián A; Antelo Rodríguez, Beatriz B; Díaz Arias, José Ángel JÁ; Bello López, José Luis JL

Publication Date: 2019-09-30

Variant appearance in text: GC: 918G>T

PubMed Link: 31570692

Variant Present in the following documents:

• 41408_2019_243_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.

G3 (Bethesda, Md.)

Vale-Silva, Luis L; Beaudoing, Emmanuel E; Tran, Van Du T VDT; Sanglard, Dominique D

Publication Date: 2017-08-07

Variant appearance in text: GC: 918G>T

PubMed Link: 28663342

Variant Present in the following documents:

• 2413FileS2.xlsx, sheet 1

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Diagnostic Performance of the GenoType MTBDRplus and MTBDRsl Assays to Identify Tuberculosis Drug Resistance in Eastern China.

Chinese Medical Journal

Liu, Qiao Q; Li, Guo-Li GL; Chen, Cheng C; Wang, Jian-Ming JM; Martinez, Leonardo L; Lu, Wei W; Zhu, Li-Mei LM

Publication Date: 2017-07-05

Variant appearance in text: GC: M306I

PubMed Link: 28639565

Variant Present in the following documents:

• CMJ-130-1521.pdf

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Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients.

Plos One

Merker, Matthias M; Kohl, Thomas A TA; Roetzer, Andreas A; Truebe, Leona L; Richter, Elvira E; Rüsch-Gerdes, Sabine S; Fattorini, Lanfranco L; Oggioni, Marco R MR; Cox, Helen H; Varaine, Francis F; Niemann, Stefan S

Publication Date: 2013

Variant appearance in text: GC: M306I

PubMed Link: 24324807

Variant Present in the following documents:

• Main text
• pone.0082551.pdf

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