Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.
Communications Biology
Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M
Keller, T C Stevenson TCS; Lechauve, Christophe C; Keller, Alexander S AS; Broseghini-Filho, Gilson Brás GB; Butcher, Joshua T JT; Askew Page, Henry R HR; Islam, Aditi A; Tan, Zhe Yin ZY; DeLalio, Leon J LJ; Brooks, Steven S; Sharma, Poonam P; Hong, Kwangseok K; Xu, Wenhao W; Padilha, Alessandra Simão AS; Ruddiman, Claire A CA; Best, Angela K AK; Macal, Edgar E; Kim-Shapiro, Daniel B DB; Christ, George G; Yan, Zhen Z; Cortese-Krott, Miriam M MM; Ricart, Karina K; Patel, Rakesh R; Bender, Timothy P TP; Sonkusare, Swapnil K SK; Weiss, Mitchell J MJ; Ackerman, Hans H; Columbus, Linda L; Isakson, Brant E BE
Genomic epidemiology of Mycobacterium tuberculosis in Santa Catarina, Southern Brazil.
Scientific Reports
Verza, Mirela M; Scheffer, Mara Cristina MC; Salvato, Richard Steiner RS; Schorner, Marcos André MA; Barazzetti, Fernando Hartmann FH; Machado, Hanalydia de Melo HM; Medeiros, Taiane Freitas TF; Rovaris, Darcita Buerger DB; Portugal, Isabel I; Viveiros, Miguel M; Perdigão, João J; Kritski, Afrânio A; Bazzo, Maria Luiza ML
Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing.
Emerging Microbes & Infections
Perdigão, João J; Silva, Carla C; Maltez, Fernando F; Machado, Diana D; Miranda, Anabela A; Couto, Isabel I; Rabna, Paulo P; Florez de Sessions, Paola P; Phelan, Jody J; Pain, Arnab A; McNerney, Ruth R; Hibberd, Martin L ML; Mokrousov, Igor I; Clark, Taane G TG; Viveiros, Miguel M; Portugal, Isabel I
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe.
Wellcome Open Research
Hunt, Martin M; Bradley, Phelim P; Lapierre, Simon Grandjean SG; Heys, Simon S; Thomsit, Mark M; Hall, Michael B MB; Malone, Kerri M KM; Wintringer, Penelope P; Walker, Timothy M TM; Cirillo, Daniela M DM; Comas, Iñaki I; Farhat, Maha R MR; Fowler, Phillip P; Gardy, Jennifer J; Ismail, Nazir N; Kohl, Thomas A TA; Mathys, Vanessa V; Merker, Matthias M; Niemann, Stefan S; Omar, Shaheed Vally SV; Sintchenko, Vitali V; Smith, Grace G; van Soolingen, Dick D; Supply, Philip P; Tahseen, Sabira S; Wilcox, Mark M; Arandjelovic, Irena I; Peto, Tim E A TEA; Crook, Derrick W DW; Iqbal, Zamin Z
Whole genome sequencing of drug resistant Mycobacterium tuberculosis isolates from a high burden tuberculosis region of North West Pakistan.
Scientific Reports
Jabbar, Abdul A; Phelan, Jody E JE; de Sessions, Paola Florez PF; Khan, Taj Ali TA; Rahman, Hazir H; Khan, Sadiq Noor SN; Cantillon, Daire M DM; Wildner, Leticia Muraro LM; Ali, Sajid S; Campino, Susana S; Waddell, Simon J SJ; Clark, Taane G TG
Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia.
Nature Communications
Kusakabe, Manabu M; Sun, Ann Chong AC; Tyshchenko, Kateryna K; Wong, Rachel R; Nanda, Aastha A; Shanna, Claire C; Gusscott, Samuel S; Chavez, Elizabeth A EA; Lorzadeh, Alireza A; Zhu, Alice A; Hill, Ainsleigh A; Hung, Stacy S; Brown, Scott S; Babaian, Artem A; Wang, Xuehai X; Holt, Robert A RA; Steidl, Christian C; Karsan, Aly A; Humphries, R Keith RK; Eaves, Connie J CJ; Hirst, Martin M; Weng, Andrew P AP
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.
Plos Medicine
Cohen, Keira A KA; Abeel, Thomas T; Manson McGuire, Abigail A; Desjardins, Christopher A CA; Munsamy, Vanisha V; Shea, Terrance P TP; Walker, Bruce J BJ; Bantubani, Nonkqubela N; Almeida, Deepak V DV; Alvarado, Lucia L; Chapman, Sinéad B SB; Mvelase, Nomonde R NR; Duffy, Eamon Y EY; Fitzgerald, Michael G MG; Govender, Pamla P; Gujja, Sharvari S; Hamilton, Susanna S; Howarth, Clinton C; Larimer, Jeffrey D JD; Maharaj, Kashmeel K; Pearson, Matthew D MD; Priest, Margaret E ME; Zeng, Qiandong Q; Padayatchi, Nesri N; Grosset, Jacques J; Young, Sarah K SK; Wortman, Jennifer J; Mlisana, Koleka P KP; O'Donnell, Max R MR; Birren, Bruce W BW; Bishai, William R WR; Pym, Alexander S AS; Earl, Ashlee M AM
Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients.
Plos One
Merker, Matthias M; Kohl, Thomas A TA; Roetzer, Andreas A; Truebe, Leona L; Richter, Elvira E; Rüsch-Gerdes, Sabine S; Fattorini, Lanfranco L; Oggioni, Marco R MR; Cox, Helen H; Varaine, Francis F; Niemann, Stefan S