Molecular transition of SARS-CoV-2 from critical patients during the first year of the COVID-19 pandemic in Mexico City.
Frontiers In Cellular And Infection Microbiology
De La Cruz-Montoya, Aldo Hugo AH; Díaz Velásquez, Clara Estela CE; Martínez-Gregorio, Héctor H; Ruiz-De La Cruz, Miguel M; Bustos-Arriaga, José J; Castro-Jiménez, Tannya Karen TK; Olguín-Hernández, Jonadab Efraín JE; Rodríguez-Sosa, Miriam M; Terrazas-Valdes, Luis Ignacio LI; Jiménez-Alvarez, Luis Armando LA; Regino-Zamarripa, Nora Elemi NE; Ramírez-Martínez, Gustavo G; Cruz-Lagunas, Alfredo A; Peralta-Arrieta, Irlanda I; Armas-López, Leonel L; Contreras-Garza, Belinda Maricela BM; Palma-Cortés, Gabriel G; Cabello-Gutierrez, Carlos C; Báez-Saldaña, Renata R; Zúñiga, Joaquín J; Ávila-Moreno, Federico F; Vaca-Paniagua, Felipe F
Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.
Communications Biology
Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M
Network expansion of genetic associations defines a pleiotropy map of human cell biology.
Nature Genetics
Barrio-Hernandez, Inigo I; Schwartzentruber, Jeremy J; Shrivastava, Anjali A; Del-Toro, Noemi N; Gonzalez, Asier A; Zhang, Qian Q; Mountjoy, Edward E; Suveges, Daniel D; Ochoa, David D; Ghoussaini, Maya M; Bradley, Glyn G; Hermjakob, Henning H; Orchard, Sandra S; Dunham, Ian I; Anderson, Carl A CA; Porras, Pablo P; Beltrao, Pedro P
Genome Sequences of SARS-CoV-2 Strains from the Republic of Moldova.
Microbiology Resource Announcements
Ulinici, Mariana M; Soñora, Martín M; Orsini, Emanuele E; Licastro, Danilo D; Dal Monego, Simeone S; Todiras, Mihail M; Lungu, Ludmila L; Groppa, Stanislav S; Marcello, Alessandro A
Bioinformatics approach for the construction of multiple epitope vaccine against omicron variant of SARS-CoV-2.
Scientific Reports
Zaib, Sumera S; Akram, Fatima F; Liaqat, Syed Talha ST; Altaf, Muhammad Zain MZ; Khan, Imtiaz I; Dera, Ayed A AA; Uddin, Jalal J; Khan, Ajmal A; Al-Harrasi, Ahmed A
Non-uniform aspects of the SARS-CoV-2 intraspecies evolution reopen question of its origin.
International Journal Of Biological Macromolecules
Hassan, Sk Sarif SS; Kodakandla, Vaishnavi V; Redwan, Elrashdy M EM; Lundstrom, Kenneth K; Choudhury, Pabitra Pal PP; Serrano-Aroca, Ángel Á; Azad, Gajendra Kumar GK; Aljabali, Alaa A A AAA; Palu, Giorgio G; Abd El-Aziz, Tarek Mohamed TM; Barh, Debmalya D; Uhal, Bruce D BD; Adadi, Parise P; Takayama, Kazuo K; Bazan, Nicolas G NG; Tambuwala, Murtaza M; Sherchan, Samendra P SP; Lal, Amos A; Chauhan, Gaurav G; Baetas-da-Cruz, Wagner W; Uversky, Vladimir N VN
Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.
Nature Genetics
Zhou, Xueya X; Feliciano, Pamela P; Shu, Chang C; Wang, Tianyun T; Astrovskaya, Irina I; Hall, Jacob B JB; Obiajulu, Joseph U JU; Wright, Jessica R JR; Murali, Shwetha C SC; Xu, Simon Xuming SX; Brueggeman, Leo L; Thomas, Taylor R TR; Marchenko, Olena O; Fleisch, Christopher C; Barns, Sarah D SD; Snyder, LeeAnne Green LG; Han, Bing B; Chang, Timothy S TS; Turner, Tychele N TN; Harvey, William T WT; Nishida, Andrew A; O'Roak, Brian J BJ; Geschwind, Daniel H DH; , ; Michaelson, Jacob J JJ; Volfovsky, Natalia N; Eichler, Evan E EE; Shen, Yufeng Y; Chung, Wendy K WK
A comprehensive genomic study, mutation screening, phylogenetic and statistical analysis of SARS-CoV-2 and its variant omicron among different countries.
Journal Of Infection And Public Health
Ahmad, Syed Umair SU; Hafeez Kiani, Bushra B; Abrar, Muhammad M; Jan, Zainab Z; Zafar, Imran I; Ali, Yasir Y; Alanazi, Amer M AM; Malik, Abdul A; Rather, Mohd Ashraf MA; Ahmad, Asrar A; Khan, Azmat Ali AA
Phylogenetic analysis and comparative genomics of SARS-CoV-2 from survivor and non-survivor COVID-19 patients in Cordoba, Argentina.
Bmc Genomics
Olivero, Nadia B NB; Gonzalez-Reiche, Ana S AS; Re, Viviana E VE; Castro, Gonzalo M GM; Pisano, María B MB; Sicilia, Paola P; Barbas, María G MG; Khan, Zenab Z; van de Guchte, Adriana A; Dutta, Jayeeta J; Cortes, Paulo R PR; Hernandez-Morfa, Mirelys M; Zappia, Victoria E VE; Ortiz, Lucia L; Geiger, Ginger G; Rajao, Daniela D; Perez, Daniel R DR; van Bakel, Harm H; Echenique, Jose J
Identifying colorectal cancer caused by biallelic MUTYH pathogenic variants using tumor mutational signatures.
Nature Communications
Georgeson, Peter P; Harrison, Tabitha A TA; Pope, Bernard J BJ; Zaidi, Syed H SH; Qu, Conghui C; Steinfelder, Robert S RS; Lin, Yi Y; Joo, Jihoon E JE; Mahmood, Khalid K; Clendenning, Mark M; Walker, Romy R; Amitay, Efrat L EL; Berndt, Sonja I SI; Brenner, Hermann H; Campbell, Peter T PT; Cao, Yin Y; Chan, Andrew T AT; Chang-Claude, Jenny J; Doheny, Kimberly F KF; Drew, David A DA; Figueiredo, Jane C JC; French, Amy J AJ; Gallinger, Steven S; Giannakis, Marios M; Giles, Graham G GG; Gsur, Andrea A; Gunter, Marc J MJ; Hoffmeister, Michael M; Hsu, Li L; Huang, Wen-Yi WY; Limburg, Paul P; Manson, JoAnn E JE; Moreno, Victor V; Nassir, Rami R; Nowak, Jonathan A JA; Obón-Santacana, Mireia M; Ogino, Shuji S; Phipps, Amanda I AI; Potter, John D JD; Schoen, Robert E RE; Sun, Wei W; Toland, Amanda E AE; Trinh, Quang M QM; Ugai, Tomotaka T; Macrae, Finlay A FA; Rosty, Christophe C; Hudson, Thomas J TJ; Jenkins, Mark A MA; Thibodeau, Stephen N SN; Winship, Ingrid M IM; Peters, Ulrike U; Buchanan, Daniel D DD
Germline mutations in penetrant cancer predisposition genes are rare in men with prostate cancer selecting active surveillance.
Cancer Medicine
Brady, Lauren L; Newcomb, Lisa F LF; Zhu, Kehao K; Zheng, Yingye Y; Boyer, Hilary H; Sarkar, Navonil De N; McKenney, Jesse K JK; Brooks, James D JD; Carroll, Peter R PR; Dash, Atreya A; Ellis, William J WJ; Filson, Christopher P CP; Gleave, Martin E ME; Liss, Michael A MA; Martin, Frances F; Morgan, Todd M TM; Thompson, Ian M IM; Wagner, Andrew A AA; Pritchard, Colin C CC; Lin, Daniel W DW; Nelson, Peter S PS
The Rapid Antigen Detection Test for SARS-CoV-2 Underestimates the Identification of COVID-19 Positive Cases and Compromises the Diagnosis of the SARS-CoV-2 (K417N/T, E484K, and N501Y) Variants.
Frontiers In Public Health
Barrera-Avalos, Carlos C; Luraschi, Roberto R; Vallejos-Vidal, Eva E; Mella-Torres, Andrea A; Hernández, Felipe F; Figueroa, Maximiliano M; Rioseco, Claudia C; Valdés, Daniel D; Imarai, Mónica M; Acuña-Castillo, Claudio C; Reyes-López, Felipe E FE; Sandino, Ana María AM
SARS-CoV-2 Omicron has extensive but incomplete escape of Pfizer BNT162b2 elicited neutralization and requires ACE2 for infection.
Medrxiv : The Preprint Server For Health Sciences
Cele, Sandile S; Jackson, Laurelle L; Khoury, David S DS; Khan, Khadija K; Moyo-Gwete, Thandeka T; Tegally, Houriiyah H; San, James Emmanuel JE; Cromer, Deborah D; Scheepers, Cathrine C; Amoako, Daniel D; Karim, Farina F; Bernstein, Mallory M; Lustig, Gila G; Archary, Derseree D; Smith, Muneerah M; Ganga, Yashica Y; Jule, Zesuliwe Z; Reedoy, Kajal K; Hwa, Shi-Hsia SH; Giandhari, Jennifer J; Blackburn, Jonathan M JM; Gosnell, Bernadett I BI; Abdool Karim, Salim S SS; Hanekom, Willem W; , ; , ; von Gottberg, Anne A; Bhiman, Jinal J; Lessells, Richard J RJ; Moosa, Mahomed-Yunus S MS; Davenport, Miles P MP; de Oliveira, Tulio T; Moore, Penny L PL; Sigal, Alex A
Genome Sequences of Two Novel Coronavirus (SARS-CoV-2) Isolates from Dhaka, Bangladesh.
Microbiology Resource Announcements
Matin, M Abdul MA; Nahid, Abdullah Al AA; Sarkar, Bishajit B; Ullah, M Asad MA; Araf, Yusha Y; Adnan, Nihad N; Islam, Rashedul R; Rahman, Mohammad Shahedur MS
SARS-CoV-2 worldwide replication drives rapid rise and selection of mutations across the viral genome: a time-course study - potential challenge for vaccines and therapies.
Embo Molecular Medicine
Weber, Stefanie S; Ramirez, Christina M CM; Weiser, Barbara B; Burger, Harold H; Doerfler, Walter W
Coding-Complete Genome Sequences of NITMA1086 and NITMA1139, Two SARS-CoV-2 Isolates from Belagavi District, Karnataka State, India, Harboring the D614G Mutation.
Microbiology Resource Announcements
Singh, Ishwar I; Vetrivel, Umashankar U; Harish, D R DR; Chattophadhyay, Debprasad D
Genome Sequence of a SARS-CoV-2 VUI 202012/01 Strain Identified from a Patient Returning from London, England, to the Apulia Region of Italy.
Microbiology Resource Announcements
Loconsole, Daniela D; Sallustio, Anna A; Accogli, Marisa M; Centrone, Francesca F; Capozzi, Loredana L; Del Sambro, Laura L; Parisi, Antonio A; Chironna, Maria M
A rapid and cost-effective multiplex ARMS-PCR method for the simultaneous genotyping of the circulating SARS-CoV-2 phylogenetic clades.
Journal Of Medical Virology
Islam, Mohammad Tanvir MT; Alam, Asm Rubayet Ul ARU; Sakib, Najmuj N; Hasan, Mohammad Shazid MS; Chakrovarty, Tanay T; Tawyabur, Mohammad M; Islam, Ovinu Kibria OK; Al-Emran, Hassan M HM; Jahid, Mohammad Iqbal Kabir MIK; Anwar Hossain, Mohammad M
Genomic Sequences and Analysis of Five SARS-CoV-2 Variants Obtained from Patients in Lambayeque, Peru.
Microbiology Resource Announcements
Aguilar-Gamboa, Franklin Rómulo FR; Salcedo-Mejía, Luis Alberto LA; Serquén-López, Luis Miguel LM; Mechan-Llontop, Marco Enrique ME; Tullume-Vergara, Percy Omar PO; Bonifacio-Briceño, Juan José JJ; Salas-Asencios, Ramsés R; Silva Díaz, Heber H; Cárdenas, Juan P JP
Design of a companion bioinformatic tool to detect the emergence and geographical distribution of SARS-CoV-2 Spike protein genetic variants.
Journal Of Translational Medicine
Massacci, Alice A; Sperandio, Eleonora E; D'Ambrosio, Lorenzo L; Maffei, Mariano M; Palombo, Fabio F; Aurisicchio, Luigi L; Ciliberto, Gennaro G; Pallocca, Matteo M
Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing.
Microbiology Resource Announcements
Jenjaroenpun, Piroon P; Wanchai, Visanu V; Ono-Moore, Kikumi D KD; Laudadio, Jennifer J; James, Laura P LP; Adams, Sean H SH; Prior, Fred F; Nookaew, Intawat I; Ussery, David W DW; Wongsurawat, Thidathip T