Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 328G>C

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Bioinformatics pipeline unveils genetic variability to synthetic vaccine design for Indian SARS-CoV-2 genomes.

International Immunopharmacology

Ghosh, Nimisha N; Saha, Indrajit I; Sharma, Nikhil N; Nandi, Suman S

Publication Date: 2022-11

Variant appearance in text: GC: E110Q

PubMed Link: 36116149

Variant Present in the following documents:

• Main text

View BVdb publication page

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A SARS-CoV-2 Delta variant containing mutation in the probe binding region used for RT-qPCR test in Japan exhibited atypical PCR amplification and might induce false negative result.

Journal Of Infection And Chemotherapy : Official Journal Of The Japan Society Of Chemotherapy

Rajib, Samiul Alam SA; Ogi, Yasuhiro Y; Hossain, Md Belal MB; Ikeda, Terumasa T; Tanaka, Eiichi E; Kawaguchi, Tatsuya T; Satou, Yorifumi Y

Publication Date: 2022-05

Variant appearance in text: GC: E110Q

PubMed Link: 35144878

Variant Present in the following documents:

• mmc2.xls, sheet 1

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Estimated prevalence of mucopolysaccharidoses from population-based exomes and genomes.

Orphanet Journal Of Rare Diseases

Borges, Pâmella P; Pasqualim, Gabriela G; Giugliani, Roberto R; Vairo, Filippo F; Matte, Ursula U

Publication Date: 2020-11-18

Variant appearance in text: GC: 328G>C

PubMed Link: 33208168

Variant Present in the following documents:

• 13023_2020_1608_MOESM4_ESM.xlsx, sheet 7

View BVdb publication page

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The molecular mechanism of dsRNA processing by a bacterial Dicer.

Nucleic Acids Research

Jin, Lan L; Song, He H; Tropea, Joseph E JE; Needle, Danielle D; Waugh, David S DS; Gu, Shuo S; Ji, Xinhua X

Publication Date: 2019-05-21

Variant appearance in text: GC: E110Q

PubMed Link: 30916338

Variant Present in the following documents:

• Main text

View BVdb publication page

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Revealing the Molecular Portrait of Triple Negative Breast Tumors in an Understudied Population through Omics Analysis of Formalin-Fixed and Paraffin-Embedded Tissues.

Plos One

Vaca-Paniagua, Felipe F; Alvarez-Gomez, Rosa María RM; Maldonado-Martínez, Hector Aquiles HA; Pérez-Plasencia, Carlos C; Fragoso-Ontiveros, Veronica V; Lasa-Gonsebatt, Federico F; Herrera, Luis Alonso LA; Cantú, David D; Bargallo-Rocha, Enrique E; Mohar, Alejandro A; Durand, Geoffroy G; Forey, Nathalie N; Voegele, Catherine C; Vallée, Maxime M; Le Calvez-Kelm, Florence F; McKay, James J; Ardin, Maude M; Villar, Stéphanie S; Zavadil, Jiri J; Olivier, Magali M

Publication Date: 2015

Variant appearance in text: GC: E110Q

PubMed Link: 25961742

Variant Present in the following documents:

• pone.0126762.s015.xlsx, sheet 1

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Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing.

Plos One

Bodian, Dale L DL; McCutcheon, Justine N JN; Kothiyal, Prachi P; Huddleston, Kathi C KC; Iyer, Ramaswamy K RK; Vockley, Joseph G JG; Niederhuber, John E JE

Publication Date: 2014

Variant appearance in text: GC: E110Q

PubMed Link: 24728327

Variant Present in the following documents:

• pone.0094554.s002.xlsx, sheet 1

View BVdb publication page

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