Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 278C>A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: 278C>A

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 10

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Characterization of Pyroptosis-Related Subtypes via RNA-Seq and ScRNA-Seq to Predict Chemo-Immunotherapy Response in Triple-Negative Breast Cancer.

Frontiers In Genetics

Li, Chenlu C; Pan, Jingjing J; Jiang, Yinyan Y; Wu, Yanzhi Y; Jin, Zhenlin Z; Chen, Xupeng X

Publication Date: 2022

Variant appearance in text: GC: a93d

PubMed Link: 35386285

Variant Present in the following documents:

• DataSheet3.xlsx, sheet 4

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Systematic evaluation of NIPT aneuploidy detection software tools with clinically validated NIPT samples.

Plos Computational Biology

Paluoja, Priit P; Teder, Hindrek H; Ardeshirdavani, Amin A; Bayindir, Baran B; Vermeesch, Joris J; Salumets, Andres A; Krjutškov, Kaarel K; Palta, Priit P

Publication Date: 2021-12-20

Variant appearance in text: GC: A93D

PubMed Link: 34928946

Variant Present in the following documents:

• Main text

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Identification of Immune-Related Gene Signatures in Lung Adenocarcinoma and Lung Squamous Cell Carcinoma.

Frontiers In Immunology

Li, Na N; Wang, Jiahong J; Zhan, Xianquan X

Publication Date: 2021

Variant appearance in text: GC: 278C>A

PubMed Link: 34887858

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

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The oxygen reduction reaction at silver electrodes in high chloride media and the implications for silver nanoparticle toxicity.

Chemical Science

Guo, Yanjun Y; Yang, Minjun M; Xie, Ruo-Chen RC; Compton, Richard G RG

Publication Date: 2020-11-06

Variant appearance in text: GC: A93D

PubMed Link: 34163604

Variant Present in the following documents:

• Main text

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mTOR Signaling and SREBP Activity Increase FADS2 Expression and Can Activate Sapienate Biosynthesis.

Cell Reports

Triki, Mouna M; Rinaldi, Gianmarco G; Planque, Melanie M; Broekaert, Dorien D; Winkelkotte, Alina M AM; Maier, Carina R CR; Janaki Raman, Sudha S; Vandekeere, Anke A; Van Elsen, Joke J; Orth, Martin F MF; Grünewald, Thomas G P TGP; Schulze, Almut A; Fendt, Sarah-Maria SM

Publication Date: 2020-06-23

Variant appearance in text: GC: A93D

PubMed Link: 32579932

Variant Present in the following documents:

• mmc5.xlsx, sheet 3

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Insertional mutagenesis of Brachypodium distachyon using the Tnt1 retrotransposable element.

The Plant Journal : For Cell And Molecular Biology

Nandety, Raja Sekhar RS; Serrani-Yarce, Juan C JC; Gill, Upinder S US; Oh, Sunhee S; Lee, Hee-Kyung HK; Zhang, Xinji X; Dai, Xinbin X; Zhang, Wenchao W; Krom, Nick N; Wen, Jiangqi J; Zhao, Patrick X PX; Mysore, Kirankumar S KS

Publication Date: 2020-08

Variant appearance in text: GC: A93D

PubMed Link: 32410353

Variant Present in the following documents:

• Main text

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Physiological and transcriptomic responses of Lanzhou Lily (Lilium davidii, var. unicolor) to cold stress.

Plos One

Tian, Xuehui X; Xie, Jianming J; Yu, Jihua J

Publication Date: 2020

Variant appearance in text: GC: A93D

PubMed Link: 31971962

Variant Present in the following documents:

• Main text

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Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii.

The Plant Journal : For Cell And Molecular Biology

Pecrix, Yann Y; Buendia, Luis L; Penouilh-Suzette, Charlotte C; Maréchaux, Maude M; Legrand, Ludovic L; Bouchez, Olivier O; Rengel, David D; Gouzy, Jérôme J; Cottret, Ludovic L; Vear, Felicity F; Godiard, Laurence L

Publication Date: 2019-02

Variant appearance in text: GC: A93D

PubMed Link: 30422341

Variant Present in the following documents:

• Main text

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Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum.

Oncotarget

Greenawalt, Danielle M DM; Liang, Winnie S WS; Saif, Sakina S; Johnson, Justin J; Todorov, Petar P; Dulak, Austin A; Enriquez, Daniel D; Halperin, Rebecca R; Ahmed, Ambar A; Saveliev, Vladislav V; Carpten, John J; Craig, David D; Barrett, J Carl JC; Dougherty, Brian B; Zinda, Michael M; Fawell, Stephen S; Dry, Jonathan R JR; Byth, Kate K

Publication Date: 2017-11-21

Variant appearance in text: GC: 278C>A

PubMed Link: 29245897

Variant Present in the following documents:

• oncotarget-08-99237-s003.xlsx, sheet 1

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: GC: 278C>A

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

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