Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 274T>G

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: 274T>G

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8

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Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes.

Protein Science : A Publication Of The Protein Society

Weigert, Sebastian S; Perez-Garcia, Pablo P; Gisdon, Florian J FJ; Gagsteiger, Andreas A; Schweinshaut, Kristine K; Ullmann, G Matthias GM; Chow, Jennifer J; Streit, Wolfgang R WR; Höcker, Birte B

Publication Date: 2022-12

Variant appearance in text: GC: S92A

PubMed Link: 36336469

Variant Present in the following documents:

• Main text
• PRO-31-e4500.pdf

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Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity.

Plos Pathogens

Lood, Cédric C; Peeters, Charlotte C; Lamy-Besnier, Quentin Q; Wagemans, Jeroen J; De Vos, Daniel D; Proesmans, Marijke M; Pirnay, Jean-Paul JP; Echahidi, Fedoua F; Piérard, Denis D; Thimmesch, Matthieu M; Boeras, Anca A; Lagrou, Katrien K; De Canck, Evelien E; De Wachter, Elke E; van Noort, Vera V; Lavigne, Rob R; Vandamme, Peter P

Publication Date: 2021-03

Variant appearance in text: GC: 274T>G; Ser92Ala

PubMed Link: 33720991

Variant Present in the following documents:

• ppat.1009418.s005.xlsx, sheet 9

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In Silico Identification of New Targets for Diagnosis, Vaccine, and Drug Candidates against Trypanosoma cruzi.

Disease Markers

Trevisan, Rafael Obata RO; Santos, Malú Mateus MM; Desidério, Chamberttan Souza CS; Alves, Leandro Gomes LG; de Jesus Sousa, Thiago T; de Castro Oliveira, Letícia L; Jaiswal, Arun Kumar AK; Tiwari, Sandeep S; Bovi, Weslley Guimarães WG; de Oliveira-Silva, Mariana M; Costa-Madeira, Juliana Cristina JC; Castellano, Lúcio Roberto Cançado LRC; Silva, Marcos Vinicius MV; Azevedo, Vasco V; Rodrigues Junior, Virmondes V; Oliveira, Carlo José Freire CJF; de Castro Soares, Siomar S

Publication Date: 2020

Variant appearance in text: GC: S92a

PubMed Link: 33488847

Variant Present in the following documents:

• Main text
• DM2020-9130719.pdf

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A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.

Proceedings Of The National Academy Of Sciences Of The United States Of America

Needham, David M DM; Yoshizawa, Susumu S; Hosaka, Toshiaki T; Poirier, Camille C; Choi, Chang Jae CJ; Hehenberger, Elisabeth E; Irwin, Nicholas A T NAT; Wilken, Susanne S; Yung, Cheuk-Man CM; Bachy, Charles C; Kurihara, Rika R; Nakajima, Yu Y; Kojima, Keiichi K; Kimura-Someya, Tomomi T; Leonard, Guy G; Malmstrom, Rex R RR; Mende, Daniel R DR; Olson, Daniel K DK; Sudo, Yuki Y; Sudek, Sebastian S; Richards, Thomas A TA; DeLong, Edward F EF; Keeling, Patrick J PJ; Santoro, Alyson E AE; Shirouzu, Mikako M; Iwasaki, Wataru W; Worden, Alexandra Z AZ

Publication Date: 2019-10-08

Variant appearance in text: GC: S92A

PubMed Link: 31548428

Variant Present in the following documents:

• pnas.1907517116.sapp.pdf

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A combined computational-experimental approach to define the structural origin of antibody recognition of sialyl-Tn, a tumor-associated carbohydrate antigen.

Scientific Reports

Amon, Ron R; Grant, Oliver C OC; Leviatan Ben-Arye, Shani S; Makeneni, Spandana S; Nivedha, Anita K AK; Marshanski, Tal T; Norn, Christoffer C; Yu, Hai H; Glushka, John N JN; Fleishman, Sarel J SJ; Chen, Xi X; Woods, Robert J RJ; Padler-Karavani, Vered V

Publication Date: 2018-07-17

Variant appearance in text: GC: S92A

PubMed Link: 30018351

Variant Present in the following documents:

• Main text
• 41598_2018_Article_29209.pdf

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Human gastric cancer modelling using organoids.

Gut

Seidlitz, Therese T; Merker, Sebastian R SR; Rothe, Alexander A; Zakrzewski, Falk F; von Neubeck, Cläre C; Grützmann, Konrad K; Sommer, Ulrich U; Schweitzer, Christine C; Schölch, Sebastian S; Uhlemann, Heike H; Gaebler, Anne-Marlene AM; Werner, Kristin K; Krause, Mechthild M; Baretton, Gustavo B GB; Welsch, Thilo T; Koo, Bon-Kyoung BK; Aust, Daniela E DE; Klink, Barbara B; Weitz, Jürgen J; Stange, Daniel E DE

Publication Date: 2019-02

Variant appearance in text: GC: Ser92Ala

PubMed Link: 29703791

Variant Present in the following documents:

• gutjnl-2017-314549supp010.xlsx, sheet 3

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Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.

G3 (Bethesda, Md.)

Vale-Silva, Luis L; Beaudoing, Emmanuel E; Tran, Van Du T VDT; Sanglard, Dominique D

Publication Date: 2017-08-07

Variant appearance in text: GC: 274T>G; Ser92Ala

PubMed Link: 28663342

Variant Present in the following documents:

• 2413FileS2.xlsx, sheet 1

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Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: GC: 274T>G

PubMed Link: 28231761

Variant Present in the following documents:

• 12864_2017_3524_MOESM3_ESM.xlsx, sheet 2

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Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities.

Israel Journal Of Chemistry

Bhagi-Damodaran, Ambika A; Petrik, Igor I; Lu, Yi Y

Publication Date: 2016-10

Variant appearance in text: GC: S92A

PubMed Link: 27994254

Variant Present in the following documents:

• Main text

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Mutational analysis of Escherichia coli sigma28 and its target promoters reveals recognition of a composite -10 region, comprised of an 'extended -10' motif and a core -10 element.

Molecular Microbiology

Koo, Byoung-Mo BM; Rhodius, Virgil A VA; Campbell, Elizabeth A EA; Gross, Carol A CA

Publication Date: 2009-05

Variant appearance in text: GC: S92A

PubMed Link: 19400790

Variant Present in the following documents:

• Main text

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