Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: S61A

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: GC: Ser61Ala

PubMed Link: 36869137

Variant Present in the following documents:

• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 8
• 42003_2023_4582_MOESM4_ESM.xlsx, sheet 9

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GENETIC SUBGROUPS INFORM ON PATHOBIOLOGY IN ADULT AND PEDIATRIC BURKITT LYMPHOMA.

Blood

Thomas, Nicole N; Dreval, Kostiantyn K; Gerhard, Daniela S DS; Hilton, Laura K LK; Abramson, Jeremy S JS; Barta, Stefan K SK; Bartlett, Nancy L NL; Bethony, Jeffrey J; Bhatia, Kishor K; Bowen, Jay J; Bryan, Anthony C AC; Cesarman, Ethel E; Casper, Corey C; Cruz, Manuela M; Dyer, Maureen M; Farinha, Pedro P; Gastier-Foster, Julie J; Gerrie, Alina S AS; Grande, Bruno B; Greiner, Timothy C TC; Griner, Nicholas N; Gross, Thomas G TG; Harris, Nancy Lee NL; Irvin, John D JD; Jaffe, Elaine S ES; Henry, David D; Huppi, Rebecca Liddell RL; Leal, Fabio E FE; Lee, Michael M; Martin, Jean Paul JP; Martin, Marie-Reine MR; Mbulaiteye, Sam M SM; Mitsuyasu, Ronald R; Morris, Vivian V; Mullighan, Charles G CG; Mungall, Andrew J AJ; Mungall, Karen K; Mutyaba, Innocent I; Nokta, Mostafa M; Namirembe, Constance C; Noy, Ariela A; Ogwang, Martin David MD; Omoding, Abrahams A; Orem, Jackson J; Ott, German G; Petrello, Hilary H; Pittaluga, Stefania S; Phelan, James D JD; Ramos, Juan Carlos JC; Ratner, Lee L; Reynolds, Steven J SJ; Rubinstein, Paul G PG; Sissolak, Gerhard G; Slack, Graham W GW; Soudi, Shaghayegh S; Swerdlow, Steven Howard SH; Traverse-Glehen, Alexandra A; Wilson, Wyndham W; Wong, Jasper Chun Hei JCH; Yarchoan, Robert R; ZenKlusen, Jean C JC; Marra, Marco A MA; Staudt, Louis M LM; Scott, David W DW; Morin, Ryan D RD

Publication Date: 2022-10-06

Variant appearance in text: GC: 181_182delAGinsGC; S61A

PubMed Link: 36201743

Variant Present in the following documents:

• BLOOD_BLD-2022-016534-mmc1.xlsx, sheet 6

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Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions.

Acta Neuropathologica Communications

Park, Hongsun H; Yamanaka, Tomoyuki T; Toyama, Yumiko Y; Fujita, Atsushi A; Doi, Hiroshi H; Nirasawa, Takashi T; Murayama, Shigeo S; Matsumoto, Naomichi N; Shimogori, Tomomi T; Ikegawa, Masaya M; Haltia, Matti J MJ; Nukina, Nobuyuki N

Publication Date: 2022-03-04

Variant appearance in text: GC: S61A

PubMed Link: 35246273

Variant Present in the following documents:

• 40478_2022_1333_MOESM3_ESM.xlsx, sheet 1
• 40478_2022_1333_MOESM3_ESM.xlsx, sheet 2

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Permethrin resistance in Aedes aegypti: Genomic variants that confer knockdown resistance, recovery, and death.

Plos Genetics

Saavedra-Rodriguez, Karla K; Campbell, Corey L CL; Lozano, Saul S; Penilla-Navarro, Patricia P; Lopez-Solis, Alma A; Solis-Santoyo, Francisco F; Rodriguez, Americo D AD; Perera, Rushika R; Black Iv, William C WC

Publication Date: 2021-06

Variant appearance in text: GC: S61A

PubMed Link: 34138859

Variant Present in the following documents:

• pgen.1009606.s002.xlsx, sheet 1

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SKI activates the Hippo pathway via LIMD1 to inhibit cardiac fibroblast activation.

Basic Research In Cardiology

Landry, Natalie M NM; Rattan, Sunil G SG; Filomeno, Krista L KL; Meier, Thomas W TW; Meier, Simon C SC; Foran, Sarah J SJ; Meier, Claire F CF; Koleini, Navid N; Fandrich, Robert R RR; Kardami, Elissavet E; Duhamel, Todd A TA; Dixon, Ian M C IMC

Publication Date: 2021-04-13

Variant appearance in text: GC: S61A

PubMed Link: 33847835

Variant Present in the following documents:

• 395_2021_Article_865.pdf

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SKI activates the Hippo pathway via LIMD1 to inhibit cardiac fibroblast activation.

Basic Research In Cardiology

Landry, Natalie M NM; Rattan, Sunil G SG; Filomeno, Krista L KL; Meier, Thomas W TW; Meier, Simon C SC; Foran, Sarah J SJ; Meier, Claire F CF; Koleini, Navid N; Fandrich, Robert R RR; Kardami, Elissavet E; Duhamel, Todd A TA; Dixon, Ian M C IMC

Publication Date: 2021-04-13

Variant appearance in text: GC: S61A

PubMed Link: 33847835

Variant Present in the following documents:

• 395_2021_Article_865.pdf

View BVdb publication page

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Identification of a nonsense mutation in TNNI3K associated with cardiac conduction disease.

Journal Of Clinical Laboratory Analysis

Liu, Jiang J; Liu, Da D; Li, Muzheng M; Wu, Keke K; Liu, Na N; Zhao, Chenyu C; Shi, Xiaoliu X; Liu, Qiming Q

Publication Date: 2020-09

Variant appearance in text: GC: S61A

PubMed Link: 32529721

Variant Present in the following documents:

• JCLA-34-e23418-s003.xls, sheet 1

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Multi-level evidence of an allelic hierarchy of USH2A variants in hearing, auditory processing and speech/language outcomes.

Communications Biology

Perrino, Peter A PA; Talbot, Lidiya L; Kirkland, Rose R; Hill, Amanda A; Rendall, Amanda R AR; Mountford, Hayley S HS; Taylor, Jenny J; , ; Buscarello, Alexzandrea N AN; Lahiri, Nayana N; Saggar, Anand A; Fitch, R Holly RH; Newbury, Dianne F DF

Publication Date: 2020-04-20

Variant appearance in text: GC: S61A

PubMed Link: 32313182

Variant Present in the following documents:

• 42003_2020_885_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis.

Nature Communications

Wen, Bo B; Li, Kai K; Zhang, Yun Y; Zhang, Bing B

Publication Date: 2020-04-09

Variant appearance in text: GC: S61A

PubMed Link: 32273506

Variant Present in the following documents:

• 41467_2020_15456_MOESM4_ESM.xlsx, sheet 1
• 41467_2020_15456_MOESM6_ESM.xlsx, sheet 1
• 41467_2020_15456_MOESM5_ESM.xlsx, sheet 1

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Nonstructural Protein 11 of Porcine Reproductive and Respiratory Syndrome Virus Induces STAT2 Degradation To Inhibit Interferon Signaling.

Journal Of Virology

Yang, Liping L; He, Jia J; Wang, Rong R; Zhang, Xinheng X; Lin, Shaoli S; Ma, Zexu Z; Zhang, Yanjin Y

Publication Date: 2019-11-15

Variant appearance in text: GC: S61A

PubMed Link: 31462568

Variant Present in the following documents:

• Main text

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Hippo pathway mediates resistance to cytotoxic drugs.

Proceedings Of The National Academy Of Sciences Of The United States Of America

Gujral, Taranjit S TS; Kirschner, Marc W MW

Publication Date: 2017-05-02

Variant appearance in text: GC: S61A

PubMed Link: 28416665

Variant Present in the following documents:

• Main text

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Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo.

Proceedings Of The National Academy Of Sciences Of The United States Of America

Pillai, Satish K SK; Abdel-Mohsen, Mohamed M; Guatelli, John J; Skasko, Mark M; Monto, Alexander A; Fujimoto, Katsuya K; Yukl, Steven S; Greene, Warner C WC; Kovari, Helen H; Rauch, Andri A; Fellay, Jacques J; Battegay, Manuel M; Hirschel, Bernard B; Witteck, Andrea A; Bernasconi, Enos E; Ledergerber, Bruno B; Günthard, Huldrych F HF; Wong, Joseph K JK; ,

Publication Date: 2012-02-21

Variant appearance in text: GC: S61A

PubMed Link: 22315404

Variant Present in the following documents:

• Main text

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Structural and functional studies on the N-terminal domain of the Shigella type III secretion protein MxiG.

The Journal Of Biological Chemistry

McDowell, Melanie A MA; Johnson, Steven S; Deane, Janet E JE; Cheung, Martin M; Roehrich, A Dorothea AD; Blocker, Ariel J AJ; McDonnell, James M JM; Lea, Susan M SM

Publication Date: 2011-09-02

Variant appearance in text: GC: S61A

PubMed Link: 21733840

Variant Present in the following documents:

• Main text
• zbc30606.pdf

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Functional characterization of the incomplete phosphotransferase system (PTS) of the intracellular pathogen Brucella melitensis.

Plos One

Dozot, Marie M; Poncet, Sandrine S; Nicolas, Cécile C; Copin, Richard R; Bouraoui, Houda H; Mazé, Alain A; Deutscher, Josef J; De Bolle, Xavier X; Letesson, Jean-Jacques JJ

Publication Date: 2010-09-10

Variant appearance in text: GC: S61A

PubMed Link: 20844759

Variant Present in the following documents:

• Main text
• pone.0012679.pdf

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Isolation and biochemical characterization of two novel metagenome-derived esterases.

Applied And Environmental Microbiology

Elend, C C; Schmeisser, C C; Leggewie, C C; Babiak, P P; Carballeira, J D JD; Steele, H L HL; Reymond, J-L JL; Jaeger, K-E KE; Streit, W R WR

Publication Date: 2006-05

Variant appearance in text: GC: S61A

PubMed Link: 16672512

Variant Present in the following documents:

• Main text

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