Publications:

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Engineering CpG island DNA methylation in pluripotent cells through synthetic CpG-free ssDNA insertion.

Cell Reports Methods

Tompkins, Joshua J; Lizhar, Elizabeth E; Shokrani, Alireza A; Wu, Xiwei X; Berley, Jordan J; Kamali, Diba D; Hussey, Deborah D; Cerneckis, Jonas J; Kang, Tae Hyuk TH; Wang, Jinhui J; Tsark, Walter W; Zeng, Defu D; Godatha, Swetha S; Natarajan, Rama R; Riggs, Arthur A

Publication Date: 2023-05-22

Variant appearance in text: GC: P53=

PubMed Link: 37323577

Variant Present in the following documents:

• Main text
• mmc6.pdf
• main.pdf

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 159C>G

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Communications Biology

Rifkin, Riaan F RF; Vikram, Surendra S; Alcorta, Jaime J; Ramond, Jean-Baptiste JB; Cowan, Don A DA; Jakobsson, Mattias M; Schlebusch, Carina M CM; Lombard, Marlize M

Publication Date: 2023-03-03

Variant appearance in text: N/A

PubMed Link: 36869137

Variant Present in the following documents:

View BVdb publication page

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Peptidomimetics in cancer targeting.

Molecular Medicine (Cambridge, Mass.)

Gomari, Mohammad Mahmoudi MM; Abkhiz, Shadi S; Pour, Taha Ghantab TG; Lotfi, Ehsan E; Rostami, Neda N; Monfared, Fatemeh Nafe FN; Ghobari, Babak B; Mosavi, Mona M; Alipour, Behruz B; Dokholyan, Nikolay V NV

Publication Date: 2022-12-07

Variant appearance in text: GC: p53p

PubMed Link: 36476230

Variant Present in the following documents:

• Main text
• 10020_2022_Article_577.pdf

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: GC: 159C>G

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

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MHC Variants Associated With Symptomatic Versus Asymptomatic SARS-CoV-2 Infection in Highly Exposed Individuals.

Frontiers In Immunology

Castelli, Erick C EC; de Castro, Mateus V MV; Naslavsky, Michel S MS; Scliar, Marilia O MO; Silva, Nayane S B NSB; Andrade, Heloisa S HS; Souza, Andreia S AS; Pereira, Raphaela N RN; Castro, Camila F B CFB; Mendes-Junior, Celso T CT; Meyer, Diogo D; Nunes, Kelly K; Matos, Larissa R B LRB; Silva, Monize V R MVR; Wang, Jaqueline Y T JYT; Esposito, Joyce J; Coria, Vivian R VR; Bortolin, Raul H RH; Hirata, Mario H MH; Magawa, Jhosiene Y JY; Cunha-Neto, Edecio E; Coelho, Verônica V; Santos, Keity S KS; Marin, Maria Lucia C MLC; Kalil, Jorge J; Mitne-Neto, Miguel M; Maciel, Rui M B RMB; Passos-Bueno, Maria Rita MR; Zatz, Mayana M

Publication Date: 2021

Variant appearance in text: GC: 159C>G

PubMed Link: 34650566

Variant Present in the following documents:

• Table_3.xlsx, sheet 5
• Table_3.xlsx, sheet 3
• Table_3.xlsx, sheet 1

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Sp1-Induced FNBP1 Drives Rigorous 3D Cell Motility in EMT-Type Gastric Cancer Cells.

International Journal Of Molecular Sciences

Yoon, Bo Kyung BK; Hwang, Nahee N; Chun, Kyu-Hye KH; Lee, Yoseob Y; Duarte, Tatiana Patricia Mendes TPM; Kim, Jae-Won JW; Kim, Tae-Hyun TH; Cheong, Jae-Ho JH; Fang, Sungsoon S; Kim, Jae-Woo JW

Publication Date: 2021-06-24

Variant appearance in text: GC: P53=

PubMed Link: 34202606

Variant Present in the following documents:

• ijms-22-06784.pdf

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NOTCH target gene HES5 mediates oncogenic and tumor suppressive functions in hepatocarcinogenesis.

Oncogene

Luiken, Sarah S; Fraas, Angelika A; Bieg, Matthias M; Sugiyanto, Raisatun R; Goeppert, Benjamin B; Singer, Stephan S; Ploeger, Carolin C; Warsow, Gregor G; Marquardt, Jens U JU; Sticht, Carsten C; De La Torre, Carolina C; Pusch, Stefan S; Mehrabi, Arianeb A; Gretz, Norbert N; Schlesner, Matthias M; Eils, Roland R; Schirmacher, Peter P; Longerich, Thomas T; Roessler, Stephanie S

Publication Date: 2020-04

Variant appearance in text: GC: 159C>G

PubMed Link: 32055024

Variant Present in the following documents:

• 41388_2020_1198_MOESM2_ESM.xlsx, sheet 1

View BVdb publication page

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Genetic dynamics in untreated CLL patients with either stable or progressive disease: a longitudinal study.

Journal Of Hematology & Oncology

Ramassone, Alice A; D'Argenio, Andrea A; Veronese, Angelo A; Basti, Alessio A; Soliman, Shimaa Hassan AbdelAziz SHA; Volinia, Stefano S; Bassi, Cristian C; Pagotto, Sara S; Ferracin, Manuela M; Lupini, Laura L; Saccenti, Elena E; Balatti, Veronica V; Pepe, Felice F; Rassenti, Laura Z LZ; Innocenti, Idanna I; Autore, Francesco F; Marzetti, Laura L; Mariani-Costantini, Renato R; Kipps, Thomas J TJ; Negrini, Massimo M; Laurenti, Luca L; Visone, Rosa R

Publication Date: 2019-11-19

Variant appearance in text: GC: 159C>G

PubMed Link: 31744508

Variant Present in the following documents:

• 13045_2019_802_MOESM6_ESM.xlsx, sheet 3

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LSL-KrasG12D; LSL-Trp53R172H/+; Ink4flox/+; Ptf1/p48-Cre mice are an applicable model for locally invasive and metastatic pancreatic cancer.

Plos One

Ma, Lixiang L; Saiyin, Hexige H

Publication Date: 2017

Variant appearance in text: GC: p53p

PubMed Link: 28475592

Variant Present in the following documents:

• pone.0176844.pdf

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Landscape of genomic diversity and host adaptation in Fusarium graminearum.

Bmc Genomics

Laurent, Benoit B; Moinard, Magalie M; Spataro, Cathy C; Ponts, Nadia N; Barreau, Christian C; Foulongne-Oriol, Marie M

Publication Date: 2017-02-23

Variant appearance in text: N/A

PubMed Link: 28231761

Variant Present in the following documents:

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Ku70 functions in addition to nonhomologous end joining in pancreatic β-cells: a connection to β-catenin regulation.

Diabetes

Tavana, Omid O; Puebla-Osorio, Nahum N; Kim, Jiseong J; Sang, Mei M; Jang, Stella S; Zhu, Chengming C

Publication Date: 2013-07

Variant appearance in text: GC: p53p

PubMed Link: 23474484

Variant Present in the following documents:

• 2429.pdf

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Regulation of human dUTPase gene expression and p53-mediated transcriptional repression in response to oxaliplatin-induced DNA damage.

Nucleic Acids Research

Wilson, Peter M PM; Fazzone, William W; LaBonte, Melissa J MJ; Lenz, Heinz-Josef HJ; Ladner, Robert D RD

Publication Date: 2009-01

Variant appearance in text: GC: p53=

PubMed Link: 19015155

Variant Present in the following documents:

• gkn910.pdf

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