Publications:

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HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.

Communications Biology

Chiara, Matteo M; Horner, David S DS; Ferrandi, Erika E; Gissi, Carmela C; Pesole, Graziano G

Publication Date: 2023-04-22

Variant appearance in text: GC: 37T>C; F13L

PubMed Link: 37087497

Variant Present in the following documents:

• 42003_2023_4784_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Coding-Complete Genome Sequences of Copenhagen and Copenhagen-Derived vP811 Strains of Vaccinia Virus Isolated from Cell Culture.

Microbiology Resource Announcements

Landsberger, Mariann M; Quick, Joshua J; Mercer, Jason J

Publication Date: 2023-03-22

Variant appearance in text: GC: F13L

PubMed Link: 36946721

Variant Present in the following documents:

• Main text
• mra.00090-23.pdf

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Integrating de novo and inherited variants in 42,607 autism cases identifies mutations in new moderate-risk genes.

Nature Genetics

Zhou, Xueya X; Feliciano, Pamela P; Shu, Chang C; Wang, Tianyun T; Astrovskaya, Irina I; Hall, Jacob B JB; Obiajulu, Joseph U JU; Wright, Jessica R JR; Murali, Shwetha C SC; Xu, Simon Xuming SX; Brueggeman, Leo L; Thomas, Taylor R TR; Marchenko, Olena O; Fleisch, Christopher C; Barns, Sarah D SD; Snyder, LeeAnne Green LG; Han, Bing B; Chang, Timothy S TS; Turner, Tychele N TN; Harvey, William T WT; Nishida, Andrew A; O'Roak, Brian J BJ; Geschwind, Daniel H DH; , ; Michaelson, Jacob J JJ; Volfovsky, Natalia N; Eichler, Evan E EE; Shen, Yufeng Y; Chung, Wendy K WK

Publication Date: 2022-09

Variant appearance in text: GC: 37T>C; F13L

PubMed Link: 35982159

Variant Present in the following documents:

• 41588_2022_1148_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Monitoring of the SARS-CoV-2 Omicron BA.1/BA.2 lineage transition in the Swedish population reveals increased viral RNA levels in BA.2 cases.

Med (New York, N.Y.)

Lentini, Antonio A; Pereira, Antonio A; Winqvist, Ola O; Reinius, Björn B

Publication Date: 2022-09-09

Variant appearance in text: GC: F13L

PubMed Link: 35981541

Variant Present in the following documents:

• mmc7.xlsx, sheet 1

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Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus.

Nature Medicine

Isidro, Joana J; Borges, Vítor V; Pinto, Miguel M; Sobral, Daniel D; Santos, João Dourado JD; Nunes, Alexandra A; Mixão, Verónica V; Ferreira, Rita R; Santos, Daniela D; Duarte, Silvia S; Vieira, Luís L; Borrego, Maria José MJ; Núncio, Sofia S; de Carvalho, Isabel Lopes IL; Pelerito, Ana A; Cordeiro, Rita R; Gomes, João Paulo JP

Publication Date: 2022-08

Variant appearance in text: GC: F13L

PubMed Link: 35750157

Variant Present in the following documents:

• 41591_2022_1907_MOESM2_ESM.xlsx, sheet 3

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Systematic review and meta-analysis of genomic alterations in acral melanoma.

Pigment Cell & Melanoma Research

Broit, Natasa N; Johansson, Peter A PA; Rodgers, Chloe B CB; Walpole, Sebastian T ST; Hayward, Nicholas K NK; Pritchard, Antonia L AL

Publication Date: 2022-05

Variant appearance in text: GC: 37T>C

PubMed Link: 35229492

Variant Present in the following documents:

• PCMR-35-369-s003.xlsx, sheet 6

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Genomic characterization between strains selected for death-feigning duration for avoiding attack of a beetle.

Scientific Reports

Tanaka, Keisuke K; Sasaki, Ken K; Matsumura, Kentarou K; Yajima, Shunsuke S; Miyatake, Takahisa T

Publication Date: 2021-11-08

Variant appearance in text: GC: 37T>C; Phe13Leu

PubMed Link: 34750398

Variant Present in the following documents:

• 41598_2021_987_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins.

Journal Of Medicinal Chemistry

Povedano, Juan Manuel JM; Rallabandi, Rameshu R; Bai, Xin X; Ye, Xuecheng X; Liou, Joel J; Chen, Hong H; Kim, Jiwoong J; Xie, Yang Y; Posner, Bruce B; Rice, Luke L; De Brabander, Jef K JK; McFadden, David G DG

Publication Date: 2020-11-25

Variant appearance in text: GC: 37T>C

PubMed Link: 33180487

Variant Present in the following documents:

• jm0c01482_si_002.xlsx, sheet 1

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: GC: 37T>C

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

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Field investigation and phylogenetic characterization of orf virus (ORFV) circulating in small ruminants and Pseudocowpoxvirus (PCPV) in dromedary camels of eastern Sudan.

Heliyon

Khalafalla, Abdelmalik Ibrahim AI; Elhag, Ahmed Eisa AE; Ishag, Hassan Zackaria Ali HZA

Publication Date: 2020-03

Variant appearance in text: GC: F13L

PubMed Link: 32258461

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

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Molecular evidence and phylogenetic analysis of orf virus isolates from outbreaks in Tripura state of North-East India.

Virusdisease

Venkatesan, Gnanavel G; De, Ankan A; Arya, Sargam S; Kumar, Amit A; Muthuchelvan, D D; Debnath, Bikas Ch BC; Dutta, Tapan Kumar TK; Hemadri, Divakar D; Pandey, A B AB

Publication Date: 2018-06

Variant appearance in text: GC: F13L

PubMed Link: 29911157

Variant Present in the following documents:

• Main text

View BVdb publication page

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Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum.

Oncotarget

Greenawalt, Danielle M DM; Liang, Winnie S WS; Saif, Sakina S; Johnson, Justin J; Todorov, Petar P; Dulak, Austin A; Enriquez, Daniel D; Halperin, Rebecca R; Ahmed, Ambar A; Saveliev, Vladislav V; Carpten, John J; Craig, David D; Barrett, J Carl JC; Dougherty, Brian B; Zinda, Michael M; Fawell, Stephen S; Dry, Jonathan R JR; Byth, Kate K

Publication Date: 2017-11-21

Variant appearance in text: GC: 37T>C; F13L

PubMed Link: 29245897

Variant Present in the following documents:

• oncotarget-08-99237-s002.xlsx, sheet 1

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Vaccinia virus proteins A36 and F12/E2 show strong preferences for different kinesin light chain isoforms.

Traffic (Copenhagen, Denmark)

Gao, William N D WND; Carpentier, David C J DCJ; Ewles, Helen A HA; Lee, Stacey-Ann SA; Smith, Geoffrey L GL

Publication Date: 2017-08

Variant appearance in text: GC: F13L

PubMed Link: 28485852

Variant Present in the following documents:

• TRA-18-505.pdf

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Infection with Possible Novel Parapoxvirus in Horse, Finland, 2013.

Emerging Infectious Diseases

Airas, Niina N; Hautaniemi, Maria M; Syrjä, Pernilla P; Knuuttila, Anna A; Putkuri, Niina N; Coulter, Lesley L; McInnes, Colin J CJ; Vapalahti, Olli O; Huovilainen, Anita A; Kinnunen, Paula M PM

Publication Date: 2016-07

Variant appearance in text: GC: F13L

PubMed Link: 27315302

Variant Present in the following documents:

• 15-1636-Techapp-s1.pdf

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Age-related mutations associated with clonal hematopoietic expansion and malignancies.

Nature Medicine

Xie, Mingchao M; Lu, Charles C; Wang, Jiayin J; McLellan, Michael D MD; Johnson, Kimberly J KJ; Wendl, Michael C MC; McMichael, Joshua F JF; Schmidt, Heather K HK; Yellapantula, Venkata V; Miller, Christopher A CA; Ozenberger, Bradley A BA; Welch, John S JS; Link, Daniel C DC; Walter, Matthew J MJ; Mardis, Elaine R ER; Dipersio, John F JF; Chen, Feng F; Wilson, Richard K RK; Ley, Timothy J TJ; Ding, Li L

Publication Date: 2014-12

Variant appearance in text: GC: F13L

PubMed Link: 25326804

Variant Present in the following documents:

• NIHMS630249-supplement-6.xlsx, sheet 1

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Novel immune-modulator identified by a rapid, functional screen of the parapoxvirus ovis (Orf virus) genome.

Proteome Science

McGuire, Michael J MJ; Johnston, Stephen A SA; Sykes, Kathryn F KF

Publication Date: 2012-01-13

Variant appearance in text: GC: F13L

PubMed Link: 22243932

Variant Present in the following documents:

• 1477-5956-10-4.pdf

View BVdb publication page

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