Publications:

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Evaluation of a Novel In-house HIV-1 Genotype Drug Resistance Assay using Clinical Samples in China.

Current Hiv Research

Gao, Peijie P; Yu, Fengting F; Yang, Xiaozhen X; Li, Dan D; Shi, Yalun Y; Wang, Yan Y; Zhang, Fujie F

Publication Date: 2022

Variant appearance in text: 225: L10I

PubMed Link: 34515004

Variant Present in the following documents:

• Main text
• CHIVR-20-32.pdf

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A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins.

Journal Of Medicinal Chemistry

Povedano, Juan Manuel JM; Rallabandi, Rameshu R; Bai, Xin X; Ye, Xuecheng X; Liou, Joel J; Chen, Hong H; Kim, Jiwoong J; Xie, Yang Y; Posner, Bruce B; Rice, Luke L; De Brabander, Jef K JK; McFadden, David G DG

Publication Date: 2020-11-25

Variant appearance in text: 225: Leu10Ile

PubMed Link: 33180487

Variant Present in the following documents:

• jm0c01482_si_002.xlsx, sheet 1

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Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq.

Frontiers In Plant Science

Li, Wenli W; Riday, Heathcliffe H; Riehle, Christina C; Edwards, Andrea A; Dinkins, Randy R

Publication Date: 2019

Variant appearance in text: 225: Leu10Ile

PubMed Link: 31708937

Variant Present in the following documents:

• DataSheet_2.xlsx, sheet 1

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A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance.

Scientific Reports

Taylor, Tracy T; Lee, Emma R ER; Nykoluk, Mikaela M; Enns, Eric E; Liang, Binhua B; Capina, Rupert R; Gauthier, Marie-Krystel MK; Domselaar, Gary Van GV; Sandstrom, Paul P; Brooks, James J; Ji, Hezhao H

Publication Date: 2019-06-20

Variant appearance in text: 225: L10I

PubMed Link: 31222149

Variant Present in the following documents:

• Main text
• 41598_2019_Article_45328.pdf

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Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: 225: Leu10Ile

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Antiretroviral resistance in HIV-1 patients at a tertiary medical institute in Saudi Arabia: a retrospective study and analysis.

Bmc Infectious Diseases

Al-Mozaini, Maha M; Alrahbeni, Tahani T; Al-Mograbi, Reem R; Alrajhi, Abdulrahman A

Publication Date: 2018-08-28

Variant appearance in text: 225: L10I

PubMed Link: 30153792

Variant Present in the following documents:

• Main text
• 12879_2018_Article_3339.pdf

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Whole-Genome Resequencing Identifies the Molecular Genetic Cause for the Absence of a Gy5 Glycinin Protein in Soybean PI 603408.

G3 (Bethesda, Md.)

Gillman, Jason D JD; Kim, Won-Seok WS; Song, Bo B; Oehrle, Nathan W NW; Tawari, Nilesh R NR; Liu, Shanshan S; Krishnan, Hari B HB

Publication Date: 2017-07-05

Variant appearance in text: 225: Leu10Ile

PubMed Link: 28592556

Variant Present in the following documents:

• 2345FileS1.xlsx, sheet 1

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A Modified P1 Moiety Enhances In Vitro Antiviral Activity against Various Multidrug-Resistant HIV-1 Variants and In Vitro Central Nervous System Penetration Properties of a Novel Nonpeptidic Protease Inhibitor, GRL-10413.

Antimicrobial Agents And Chemotherapy

Amano, Masayuki M; Salcedo-Gómez, Pedro Miguel PM; Zhao, Rui R; Yedidi, Ravikiran S RS; Das, Debananda D; Bulut, Haydar H; Delino, Nicole S NS; Sheri, Venkata Reddy VR; Ghosh, Arun K AK; Mitsuya, Hiroaki H

Publication Date: 2016-12

Variant appearance in text: 225: L10I

PubMed Link: 27620483

Variant Present in the following documents:

• Main text

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Effectiveness of Ritonavir-Boosted Protease Inhibitor Monotherapy in Clinical Practice Even with Previous Virological Failures to Protease Inhibitor-Based Regimens.

Plos One

López-Cortés, Luis F LF; Castaño, Manuel A MA; López-Ruz, Miguel A MA; Rios-Villegas, María J MJ; Hernández-Quero, José J; Merino, Dolores D; Jiménez-Aguilar, Patricia P; Marquez-Solero, Manuel M; Terrón-Pernía, Alberto A; Tellez-Pérez, Francisco F; Viciana, Pompeyo P; Orihuela-Cañadas, Francisco F; Palacios-Baena, Zaira Z; Vinuesa-Garcia, David D; Fajardo-Pico, Jose M JM; Romero-Palacios, Alberto A; Ojeda-Burgos, Guillermo G; Pasquau-Liaño, Juan J

Publication Date: 2016

Variant appearance in text: 225: L10I

PubMed Link: 26872331

Variant Present in the following documents:

• pone.0148924.pdf

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Identification of Immunogenic Cytotoxic T Lymphocyte Epitopes Containing Drug Resistance Mutations in Antiretroviral Treatment-Naïve HIV-Infected Individuals.

Plos One

Blanco-Heredia, Juan J; Lecanda, Aarón A; Valenzuela-Ponce, Humberto H; Brander, Christian C; Ávila-Ríos, Santiago S; Reyes-Terán, Gustavo G

Publication Date: 2016

Variant appearance in text: 225: L10I

PubMed Link: 26808823

Variant Present in the following documents:

• pone.0147571.s001.xlsx, sheet 1

View BVdb publication page

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Principles Governing A-to-I RNA Editing in the Breast Cancer Transcriptome.

Cell Reports

Fumagalli, Debora D; Gacquer, David D; Rothé, Françoise F; Lefort, Anne A; Libert, Frederick F; Brown, David D; Kheddoumi, Naima N; Shlien, Adam A; Konopka, Tomasz T; Salgado, Roberto R; Larsimont, Denis D; Polyak, Kornelia K; Willard-Gallo, Karen K; Desmedt, Christine C; Piccart, Martine M; Abramowicz, Marc M; Campbell, Peter J PJ; Sotiriou, Christos C; Detours, Vincent V

Publication Date: 2015-10-13

Variant appearance in text: 225: L10I

PubMed Link: 26440892

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

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Mutations Proximal to Sites of Autoproteolysis and the α-Helix That Co-evolve under Drug Pressure Modulate the Autoprocessing and Vitality of HIV-1 Protease.

Biochemistry

Louis, John M JM; Deshmukh, Lalit L; Sayer, Jane M JM; Aniana, Annie A; Clore, G Marius GM

Publication Date: 2015-09-08

Variant appearance in text: 225: L10I

PubMed Link: 26266692

Variant Present in the following documents:

• Main text

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Mutations in the reverse transcriptase and protease genes of human immunodeficiency virus-1 from antiretroviral naïve and treated pediatric patients.

Viruses

Bure, Dinesh D; Makhdoomi, Muzamil A MA; Lodha, Rakesh R; Prakash, Somi Sankaran SS; Kumar, Rajesh R; Parray, Hilal A HA; Singh, Ravinder R; Kabra, Sushil K SK; Luthra, Kalpana K

Publication Date: 2015-02-10

Variant appearance in text: 225: L10I

PubMed Link: 25674767

Variant Present in the following documents:

• Main text
• viruses-07-00590.pdf

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Deep sequencing of HIV-1 near full-length proviral genomes identifies high rates of BF1 recombinants including two novel circulating recombinant forms (CRF) 70_BF1 and a disseminating 71_BF1 among blood donors in Pernambuco, Brazil.

Plos One

Pessôa, Rodrigo R; Watanabe, Jaqueline Tomoko JT; Calabria, Paula P; Felix, Alvina Clara AC; Loureiro, Paula P; Sabino, Ester C EC; Busch, Michael P MP; Sanabani, Sabri S SS; ,

Publication Date: 2014

Variant appearance in text: 225: L10I

PubMed Link: 25401747

Variant Present in the following documents:

• Main text
• pone.0112674.pdf

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Development, validation and clinical evaluation of a low cost in-house HIV-1 drug resistance genotyping assay for Indian patients.

Plos One

Acharya, Arpan A; Vaniawala, Salil S; Shah, Parth P; Misra, Rabindra Nath RN; Wani, Minal M; Mukhopadhyaya, Pratap N PN

Publication Date: 2014

Variant appearance in text: 225: L10I

PubMed Link: 25157501

Variant Present in the following documents:

• Main text

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Annotated type catalogue of the Bulimulidae (Mollusca, Gastropoda, Orthalicoidea) in the Natural History Museum, London.

Zookeys

Breure, Abraham S H AS; Ablett, Jonathan D JD

Publication Date: 2014

Variant appearance in text: 225: L10i

PubMed Link: 24715782

Variant Present in the following documents:

• Main text
• zookeys-392-001.pdf

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Natural polymorphisms and unusual mutations in HIV-1 protease with potential antiretroviral resistance: a bioinformatic analysis.

Bmc Bioinformatics

Mata-Munguía, Carlos C; Escoto-Delgadillo, Martha M; Torres-Mendoza, Blanca B; Flores-Soto, Mario M; Vázquez-Torres, Mildred M; Gálvez-Gastelum, Francisco F; Viniegra-Osorio, Arturo A; Castillero-Manzano, Marcelo M; Vázquez-Valls, Eduardo E

Publication Date: 2014-03-15

Variant appearance in text: 225: L10I

PubMed Link: 24629078

Variant Present in the following documents:

• 1471-2105-15-72.pdf

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Trends in prevalence of HIV-1 drug resistance in Thailand 2009-2010.

Journal Of Clinical Laboratory Analysis

Sanguansittianant, Sayompoo S; Nooroon, Nattakarn N; Phaengchomduan, Poonlaph P; Ammaranond, Palanee P

Publication Date: 2013-09

Variant appearance in text: 225: L10I

PubMed Link: 24038219

Variant Present in the following documents:

• Main text

View BVdb publication page

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Persistent genital tract HIV-1 RNA shedding after change in treatment regimens in antiretroviral-experienced women with detectable plasma viral load.

Journal Of Women'S Health (2002)

Venkatesh, Kartik K KK; DeLong, Allison K AK; Kantor, Rami R; Chapman, Stacey S; Ingersoll, Jessica J; Kurpewski, Jaclynn J; De Pasquale, Maria Pia MP; D'Aquila, Richard R; Caliendo, Angela M AM; Cu-Uvin, Susan S

Publication Date: 2013-04

Variant appearance in text: 225: L10I

PubMed Link: 23531097

Variant Present in the following documents:

• Main text

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Resistance in pediatric patients experiencing virologic failure with first-line and second-line antiretroviral therapy.

The Pediatric Infectious Disease Journal

Orrell, Catherine C; Levison, Julie J; Ciaranello, Andrea A; Bekker, Linda-Gail LG; Kuritzkes, Daniel R DR; Freedberg, Kenneth A KA; Wood, Robin R

Publication Date: 2013-06

Variant appearance in text: 225: L10I

PubMed Link: 23303240

Variant Present in the following documents:

• Main text

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A Guide to HIV-1 Reverse Transcriptase and Protease Sequencing for Drug Resistance Studies.

Hiv Sequence Compendium

Shafer, Robert W RW; Dupnik, Kathryn K; Winters, Mark A MA; Eshleman, Susan H SH

Publication Date: 2001

Variant appearance in text: 225: L10I

PubMed Link: 22324021

Variant Present in the following documents:

• Main text

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Evolution of drug-resistant viral populations during interruption of antiretroviral therapy.

Journal Of Virology

Wang, Dongning D; Hicks, Charles B CB; Goswami, Neela D ND; Tafoya, Emi E; Ribeiro, Ruy M RM; Cai, Fangping F; Perelson, Alan S AS; Gao, Feng F

Publication Date: 2011-07

Variant appearance in text: 225: L10I

PubMed Link: 21490094

Variant Present in the following documents:

• Main text

View BVdb publication page

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Nonpolymorphic human immunodeficiency virus type 1 protease and reverse transcriptase treatment-selected mutations.

Antimicrobial Agents And Chemotherapy

Shahriar, Rajin R; Rhee, Soo-Yon SY; Liu, Tommy F TF; Fessel, W Jeffrey WJ; Scarsella, Anthony A; Towner, William W; Holmes, Susan P SP; Zolopa, Andrew R AR; Shafer, Robert W RW

Publication Date: 2009-11

Variant appearance in text: 225: L10I

PubMed Link: 19721070

Variant Present in the following documents:

• Main text

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HIV-1 drug resistance mutations: an updated framework for the second decade of HAART.

Aids Reviews

Shafer, Robert W RW; Schapiro, Jonathan M JM

Publication Date: 2008

Variant appearance in text: 225: L10I

PubMed Link: 18615118

Variant Present in the following documents:

• Main text

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Sources and magnitude of intralaboratory variability in a sequence-based genotypic assay for human immunodeficiency virus type 1 drug resistance.

Journal Of Clinical Microbiology

Galli, R A RA; Sattha, B B; Wynhoven, B B; O'Shaughnessy, M V MV; Harrigan, P R PR

Publication Date: 2003-07

Variant appearance in text: 225: L10I

PubMed Link: 12843019

Variant Present in the following documents:

• Main text

View BVdb publication page

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Activities of atazanavir (BMS-232632) against a large panel of human immunodeficiency virus type 1 clinical isolates resistant to one or more approved protease inhibitors.

Antimicrobial Agents And Chemotherapy

Colonno, Richard J RJ; Thiry, Alexandra A; Limoli, Kay K; Parkin, Neil N

Publication Date: 2003-04

Variant appearance in text: 225: L10I

PubMed Link: 12654666

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genotypic testing for human immunodeficiency virus type 1 drug resistance.

Clinical Microbiology Reviews

Shafer, Robert W RW

Publication Date: 2002-04

Variant appearance in text: 225: L10I

PubMed Link: 11932232

Variant Present in the following documents:

• Main text

View BVdb publication page

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Sensitive genetic screen for protease activity based on a cyclic AMP signaling cascade in Escherichia coli.

Journal Of Bacteriology

Dautin, N N; Karimova, G G; Ullmann, A A; Ladant, D D

Publication Date: 2000-12

Variant appearance in text: 225: L10I

PubMed Link: 11092869

Variant Present in the following documents:

• Main text

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In vitro resistance profile of the human immunodeficiency virus type 1 protease inhibitor BMS-232632.

Antimicrobial Agents And Chemotherapy

Gong, Y F YF; Robinson, B S BS; Rose, R E RE; Deminie, C C; Spicer, T P TP; Stock, D D; Colonno, R J RJ; Lin, P F PF

Publication Date: 2000-09

Variant appearance in text: 225: L10I

PubMed Link: 10952574

Variant Present in the following documents:

• Main text

View BVdb publication page

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