Publications:

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Integrative proteomic characterization of adenocarcinoma of esophagogastric junction.

Nature Communications

Li, Shengli S; Yuan, Li L; Xu, Zhi-Yuan ZY; Xu, Jing-Li JL; Chen, Gui-Ping GP; Guan, Xiaoqing X; Pan, Guang-Zhao GZ; Hu, Can C; Dong, Jinyun J; Du, Yi-An YA; Yang, Li-Tao LT; Ni, Mao-Wei MW; Jiang, Rui-Bin RB; Zhu, Xiu X; Lv, Hang H; Xu, Han-Dong HD; Zhang, Sheng-Jie SJ; Qin, Jiang-Jiang JJ; Cheng, Xiang-Dong XD

Publication Date: 2023-02-11

Variant appearance in text: 225: 35C>T

PubMed Link: 36774361

Variant Present in the following documents:

• 41467_2023_36462_MOESM5_ESM.xlsx, sheet 1

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Spatial genomic diversity associated with APOBEC mutagenesis in squamous cell carcinoma arising from ovarian teratoma.

Cancer Science

Tamura, Ryo R; Nakaoka, Hirofumi H; Yachida, Nozomi N; Ueda, Haruka H; Ishiguro, Tatsuya T; Motoyama, Teiichi T; Inoue, Ituro I; Enomoto, Takayuki T; Yoshihara, Kosuke K

Publication Date: 2023-02-10

Variant appearance in text: 225: 35C>T

PubMed Link: 36762791

Variant Present in the following documents:

• CAS-114-2145-s001.xlsx, sheet 9

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Self-Induced Mode-Locking in Electrically Pumped Far-Infrared Random Lasers.

Advanced Science (Weinheim, Baden-Wurttemberg, Germany)

Di Gaspare, Alessandra A; Pistore, Valentino V; Riccardi, Elisa E; Pogna, Eva A A EAA; Beere, Harvey E HE; Ritchie, David A DA; Li, Lianhe L; Davies, Alexander Giles AG; Linfield, Edmund H EH; Ferrari, Andrea C AC; Vitiello, Miriam S MS

Publication Date: 2023-01-27

Variant appearance in text: 225: S12f

PubMed Link: 36707499

Variant Present in the following documents:

• ADVS-10-2206824-s001.pdf

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High-efficiency blue-emission crystalline organic light-emitting diodes sensitized by "hot exciton" fluorescent nanoaggregates.

Science Advances

Yang, Jingjie J; Hu, Dehua D; Zhu, Feng F; Ma, Yuguang Y; Yan, Donghang D

Publication Date: 2022-12-14

Variant appearance in text: 225: S12F

PubMed Link: 36516245

Variant Present in the following documents:

• Main text
• sciadv.add1757.pdf

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Investigating SARS-CoV-2 breakthrough infections per variant and vaccine type.

Frontiers In Microbiology

Dingemans, Jozef J; van der Veer, Brian M J W BMJW; Gorgels, Koen M F KMF; Hackert, Volker V; den Heijer, Casper D J CDJ; Hoebe, Christian J P A CJPA; Savelkoul, Paul H M PHM; van Alphen, Lieke B LB

Publication Date: 2022

Variant appearance in text: 225: S12F

PubMed Link: 36504818

Variant Present in the following documents:

• Main text
• fmicb-13-1027271.pdf

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Cryo-EM structures of LolCDE reveal the molecular mechanism of bacterial lipoprotein sorting in Escherichia coli.

Plos Biology

Bei, Weiwei W; Luo, Qingshan Q; Shi, Huigang H; Zhou, Haizhen H; Zhou, Min M; Zhang, Xinzheng X; Huang, Yihua Y

Publication Date: 2022-10

Variant appearance in text: 225: S12F

PubMed Link: 36228045

Variant Present in the following documents:

• Main text

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Ca2+-modulated photoactivatable imaging reveals neuron-astrocyte glutamatergic circuitries within the nucleus accumbens.

Nature Communications

Serra, Irene I; Esparza, Julio J; Delgado, Laura L; Martín-Monteagudo, Cristina C; Puigròs, Margalida M; Podlesniy, Petar P; Trullás, Ramón R; Navarrete, Marta M

Publication Date: 2022-09-07

Variant appearance in text: 225: S12F

PubMed Link: 36071061

Variant Present in the following documents:

• 41467_2022_Article_33020.pdf

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Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: 225: 35C>T

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

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Mapping of SARS-CoV-2 spike protein evolution during first and second waves of COVID-19 infections in India.

Future Virology

Rajpal, Vijay Rani VR; Sharma, Shashi S; Kumar, Avinash A; Vaishnavi, Samantha S; Singh, Apekshita A; Sehgal, Deepmala D; Tiwari, Mughdha M; Goel, Shailendra S; Raina, Soom Nath SN

Publication Date: 2022-05

Variant appearance in text: 225: S12F

PubMed Link: 35747327

Variant Present in the following documents:

• fvl-2021-0267.pdf

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SARS-CoV-2 whole-proteome sequences from environment as an indicator of community viral distribution, evolution and epidemiological dynamics: A cohort analysis of Austria.

Environmental Microbiology Reports

Magateshvaren Saras, Murali Aadhitya MA; Patro, L Ponoop Prasad LPP; Uttamrao, Patil Pranita PP; Rathinavelan, Thenmalarchelvi T

Publication Date: 2022-12

Variant appearance in text: 225: S12F

PubMed Link: 35718540

Variant Present in the following documents:

• EMI4-9999-0-s003.xlsx, sheet 1

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Genotype-by-Diet Interactions for Larval Performance and Body Composition Traits in the Black Soldier Fly, Hermetia illucens.

Insects

Sandrock, Christoph C; Leupi, Simon S; Wohlfahrt, Jens J; Kaya, Cengiz C; Heuel, Maike M; Terranova, Melissa M; Blanckenhorn, Wolf U WU; Windisch, Wilhelm W; Kreuzer, Michael M; Leiber, Florian F

Publication Date: 2022-04-30

Variant appearance in text: 225: S12f

PubMed Link: 35621760

Variant Present in the following documents:

• insects-13-00424.pdf

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Single-Particle Resolution of Copper-Associated Annular α-Synuclein Oligomers Reveals Potential Therapeutic Targets of Neurodegeneration.

Acs Chemical Neuroscience

Synhaivska, Olena O; Bhattacharya, Shayon S; Campioni, Silvia S; Thompson, Damien D; Nirmalraj, Peter Niraj PN

Publication Date: 2022-05-04

Variant appearance in text: 225: S12f

PubMed Link: 35414168

Variant Present in the following documents:

• Main text
• cn2c00021.pdf

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SARS-CoV-2 variants and spike mutations involved in second wave of COVID-19 pandemic in India.

Transboundary And Emerging Diseases

Muttineni, Radhakrishna R; R N, Binitha B; Putty, Kalyani K; Marapakala, Kavitha K; K P, Sandra S; Panyam, Jaslin J; Vemula, Aravind A; Singh, Shashi Mohan SM; Balachandran, Subin S; S T, Viroji Rao VR; Kondapi, Anand Kumar AK

Publication Date: 2022-09

Variant appearance in text: 225: S12F

PubMed Link: 35266305

Variant Present in the following documents:

• TBED-9999-0-s004.xlsx, sheet 1

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Characteristics, origin, and potential for cancer diagnostics of ultrashort plasma cell-free DNA.

Genome Research

Hudecova, Irena I; Smith, Christopher G CG; Hänsel-Hertsch, Robert R; Chilamakuri, Chandra S CS; Morris, James A JA; Vijayaraghavan, Aadhitthya A; Heider, Katrin K; Chandrananda, Dineika D; Cooper, Wendy N WN; Gale, Davina D; Garcia-Corbacho, Javier J; Pacey, Simon S; Baird, Richard D RD; Rosenfeld, Nitzan N; Mouliere, Florent F

Publication Date: 2022-02

Variant appearance in text: 225: S12F

PubMed Link: 34930798

Variant Present in the following documents:

• 215.pdf

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2022-01-15

Variant appearance in text: 225: S12F

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

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Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2021-11-22

Variant appearance in text: 225: S12F

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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Longitudinal analysis of SARS-CoV-2 spike and RNA-dependent RNA polymerase protein sequences reveals the emergence and geographic distribution of diverse mutations.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

Showers, William M WM; Leach, Sonia M SM; Kechris, Katerina K; Strong, Michael M

Publication Date: 2022-01

Variant appearance in text: 225: S12F

PubMed Link: 34801754

Variant Present in the following documents:

• mmc2.xlsx, sheet 1

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Longitudinal analysis of SARS-CoV-2 spike and RNA-dependent RNA polymerase protein sequences reveals the emergence and geographic distribution of diverse mutations.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

Showers, William M WM; Leach, Sonia M SM; Kechris, Katerina K; Strong, Michael M

Publication Date: 2021-11-18

Variant appearance in text: 225: S12F

PubMed Link: 34801754

Variant Present in the following documents:

• mmc2.xlsx, sheet 1

View BVdb publication page

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Genetically Encoded Supramolecular Targeting of Fluorescent Membrane Tension Probes within Live Cells: Precisely Localized Controlled Release by External Chemical Stimulation.

Jacs Au

López-Andarias, Javier J; Straková, Karolína K; Martinent, Rémi R; Jiménez-Rojo, Noemi N; Riezman, Howard H; Sakai, Naomi N; Matile, Stefan S

Publication Date: 2021-02-22

Variant appearance in text: 225: S12F

PubMed Link: 34467286

Variant Present in the following documents:

• au0c00069.pdf

View BVdb publication page

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Rechargeable Aqueous Zinc-Ion Batteries in MgSO4/ZnSO4 Hybrid Electrolytes.

Nano-Micro Letters

Zhang, Yingmeng Y; Li, Henan H; Huang, Shaozhuan S; Fan, Shuang S; Sun, Lingna L; Tian, Bingbing B; Chen, Fuming F; Wang, Ye Y; Shi, Yumeng Y; Yang, Hui Ying HY

Publication Date: 2020-02-21

Variant appearance in text: 225: S12f

PubMed Link: 34138271

Variant Present in the following documents:

• Main text
• 40820_2020_Article_385.pdf

View BVdb publication page

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RNA-seq of human T cells after hematopoietic stem cell transplantation identifies Linc00402 as a regulator of T cell alloimmunity.

Science Translational Medicine

Peltier, Daniel D; Radosevich, Molly M; Ravikumar, Visweswaran V; Pitchiaya, Sethuramasundaram S; Decoville, Thomas T; Wood, Sherri C SC; Hou, Guoqing G; Zajac, Cynthia C; Oravecz-Wilson, Katherine K; Sokol, David D; Henig, Israel I; Wu, Julia J; Kim, Stephanie S; Taylor, Austin A; Fujiwara, Hideaki H; Sun, Yaping Y; Rao, Arvind A; Chinnaiyan, Arul M AM; Goldstein, Daniel R DR; Reddy, Pavan P

Publication Date: 2021-03-17

Variant appearance in text: EGR1: S12F

PubMed Link: 33731431

Variant Present in the following documents:

• Main text

View BVdb publication page

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Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells.

Nucleic Acids Research

Bartoschek, Michael D MD; Ugur, Enes E; Nguyen, Tuan-Anh TA; Rodschinka, Geraldine G; Wierer, Michael M; Lang, Kathrin K; Bultmann, Sebastian S

Publication Date: 2021-06-21

Variant appearance in text: 225: S12F

PubMed Link: 33684219

Variant Present in the following documents:

• Main text
• gkab132.pdf

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A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins.

Journal Of Medicinal Chemistry

Povedano, Juan Manuel JM; Rallabandi, Rameshu R; Bai, Xin X; Ye, Xuecheng X; Liou, Joel J; Chen, Hong H; Kim, Jiwoong J; Xie, Yang Y; Posner, Bruce B; Rice, Luke L; De Brabander, Jef K JK; McFadden, David G DG

Publication Date: 2020-11-25

Variant appearance in text: 225: 35C>T

PubMed Link: 33180487

Variant Present in the following documents:

• jm0c01482_si_002.xlsx, sheet 1

View BVdb publication page

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Some ASOs that bind in the coding region of mRNAs and induce RNase H1 cleavage can cause increases in the pre-mRNAs that may blunt total activity.

Nucleic Acids Research

Liang, Xue-Hai XH; Nichols, Joshua G JG; De Hoyos, Cheryl L CL; Crooke, Stanley T ST

Publication Date: 2020-09-25

Variant appearance in text: 225: S12F

PubMed Link: 32870273

Variant Present in the following documents:

• gkaa715.pdf

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Assessment of biomass potentials of microalgal communities in open pond raceways using mass cultivation.

Peerj

Jo, Seung-Woo SW; Do, Jeong-Mi JM; Na, Ho H; Hong, Ji Won JW; Kim, Il-Sup IS; Yoon, Ho-Sung HS

Publication Date: 2020

Variant appearance in text: 225: S12F

PubMed Link: 32742771

Variant Present in the following documents:

• Main text

View BVdb publication page

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High-density genetic linkage-map construction of hawthorn and QTL mapping for important fruit traits.

Plos One

Zhao, Yuhui Y; Zhao, Yidi Y; Guo, Yinshan Y; Su, Kai K; Shi, Xiaochang X; Liu, Di D; Zhang, Jijun J

Publication Date: 2020

Variant appearance in text: 225: 35C>T

PubMed Link: 32045463

Variant Present in the following documents:

• pone.0229020.s004.xlsx, sheet 1

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Supramolecular interactions between catalytic species allow rational control over reaction kinetics.

Chemical Science

Teunissen, Abraham J P AJP; Paffen, Tim F E TFE; Filot, Ivo A W IAW; Lanting, Menno D MD; van der Haas, Roy J C RJC; de Greef, Tom F A TFA; Meijer, E W EW

Publication Date: 2019-10-21

Variant appearance in text: 225: S12F

PubMed Link: 31827754

Variant Present in the following documents:

• SC-010-C9SC02357G-s002.pdf

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Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq.

Frontiers In Plant Science

Li, Wenli W; Riday, Heathcliffe H; Riehle, Christina C; Edwards, Andrea A; Dinkins, Randy R

Publication Date: 2019

Variant appearance in text: 225: 35C>T

PubMed Link: 31708937

Variant Present in the following documents:

• DataSheet_2.xlsx, sheet 1

View BVdb publication page

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Abundance and Biogeochemical Impact of Cable Bacteria in Baltic Sea Sediments.

Environmental Science & Technology

Hermans, Martijn M; Lenstra, Wytze K WK; Hidalgo-Martinez, Silvia S; van Helmond, Niels A G M NAGM; Witbaard, Rob R; Meysman, Filip J R FJR; Gonzalez, Santiago S; Slomp, Caroline P CP

Publication Date: 2019-07-02

Variant appearance in text: 225: S12F

PubMed Link: 31149818

Variant Present in the following documents:

• Main text
• es9b01665.pdf

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Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: 225: 35C>T

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Cancer mutations and targeted drugs can disrupt dynamic signal encoding by the Ras-Erk pathway.

Science (New York, N.Y.)

Bugaj, L J LJ; Sabnis, A J AJ; Mitchell, A A; Garbarino, J E JE; Toettcher, J E JE; Bivona, T G TG; Lim, W A WA

Publication Date: 2018-08-31

Variant appearance in text: EGR1: S12F

PubMed Link: 30166458

Variant Present in the following documents:

• Main text

View BVdb publication page

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Living with marginal coral communities: Diversity and host-specificity in coral-associated barnacles in the northern coral distribution limit of the East China Sea.

Plos One

Chan, Benny K K BKK; Xu, Guang G; Kim, Hyun Kyong HK; Park, Jin-Ho JH; Kim, Won W

Publication Date: 2018

Variant appearance in text: 225: S12F

PubMed Link: 29715264

Variant Present in the following documents:

• pone.0196309.s001.pdf

View BVdb publication page

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Quasi-periodic patterns of intrinsic brain activity in individuals and their relationship to global signal.

Neuroimage

Yousefi, Behnaz B; Shin, Jaemin J; Schumacher, Eric H EH; Keilholz, Shella D SD

Publication Date: 2018-02-15

Variant appearance in text: 225: S12f

PubMed Link: 29175200

Variant Present in the following documents:

• Main text

View BVdb publication page

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Nitrogen Fixation Mutants of the Actinobacterium Frankia Casuarinae CcI3.

Microbes And Environments

Kucho, Ken-Ichi KI; Tamari, Daiki D; Matsuyama, Shintaro S; Nabekura, Takeshi T; Tisa, Louis S LS

Publication Date: 2017-12-27

Variant appearance in text: 225: Ser12Phe

PubMed Link: 29151446

Variant Present in the following documents:

• 32_344_s1.pdf

View BVdb publication page

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A turn-on endoplasmic reticulum-targeted two-photon fluorescent probe for hydrogen sulfide and bio-imaging applications in living cells, tissues, and zebrafish.

Scientific Reports

Tang, Yonghe Y; Xu, An A; Ma, Yanyan Y; Xu, Gaoping G; Gao, Shiying S; Lin, Weiying W

Publication Date: 2017-10-11

Variant appearance in text: 225: S12f

PubMed Link: 29021592

Variant Present in the following documents:

• Main text
• 41598_2017_Article_13325.pdf

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 35C>T

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: 225: S12F

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 1
• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2

View BVdb publication page

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Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.

Plos Neglected Tropical Diseases

Carnes, Jason J; Anupama, Atashi A; Balmer, Oliver O; Jackson, Andrew A; Lewis, Michael M; Brown, Rob R; Cestari, Igor I; Desquesnes, Marc M; Gendrin, Claire C; Hertz-Fowler, Christiane C; Imamura, Hideo H; Ivens, Alasdair A; Kořený, Luděk L; Lai, De-Hua DH; MacLeod, Annette A; McDermott, Suzanne M SM; Merritt, Chris C; Monnerat, Severine S; Moon, Wonjong W; Myler, Peter P; Phan, Isabelle I; Ramasamy, Gowthaman G; Sivam, Dhileep D; Lun, Zhao-Rong ZR; Lukeš, Julius J; Stuart, Ken K; Schnaufer, Achim A

Publication Date: 2015-01

Variant appearance in text: 225: Ser12Phe

PubMed Link: 25568942

Variant Present in the following documents:

• pntd.0003404.s019.xlsx, sheet 1

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Estrogen mediated-activation of miR-191/425 cluster modulates tumorigenicity of breast cancer cells depending on estrogen receptor status.

Plos Genetics

Di Leva, Gianpiero G; Piovan, Claudia C; Gasparini, Pierluigi P; Ngankeu, Apollinaire A; Taccioli, Cristian C; Briskin, Daniel D; Cheung, Douglas G DG; Bolon, Brad B; Anderlucci, Laura L; Alder, Hansjuerg H; Nuovo, Gerard G; Li, Meng M; Iorio, Marilena V MV; Galasso, Marco M; Santhanam, Ramasamy R; Ramasamy, Santhanam S; Marcucci, Guido G; Perrotti, Danilo D; Powell, Kimerly A KA; Bratasz, Anna A; Garofalo, Michela M; Nephew, Kenneth P KP; Croce, Carlo M CM

Publication Date: 2013

Variant appearance in text: EGR1: S12F

PubMed Link: 23505378

Variant Present in the following documents:

• pgen.1003311.pdf

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