Publications:

---

A multi-population-based genomic analysis uncovers unique haplotype variants and crucial mutant genes in SARS-CoV-2.

Journal, Genetic Engineering & Biotechnology

Sheikh, Afzal A; Huang, He H; Parvin, Sultana S; Badruzzaman, Mohammad M; Ahamed, Tofayel T; Hossain, Ekhtear E; Baran, Iri Sato IS; Saud, Zahangir Alam ZA

Publication Date: 2022-11-01

Variant appearance in text: 225: F23F

PubMed Link: 36318347

Variant Present in the following documents:

• 43141_2022_431_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

---

Comprehensive analysis of coagulation indices for predicting survival in patients with biliary tract cancer.

Bmc Cancer

Ke, Xindi X; Jin, Bao B; You, Wen W; Chen, Yang Y; Xu, Haifeng H; Zhao, Haitao H; Lu, Xin X; Sang, Xinting X; Zhong, Shouxian S; Yang, Huayu H; Mao, Yilei Y; Du, Shunda S

Publication Date: 2021-08-25

Variant appearance in text: 225: F23F

PubMed Link: 34433454

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Genomic epidemiology of SARS-CoV-2 in the UAE reveals novel virus mutation, patterns of co-infection and tissue specific host immune response.

Scientific Reports

Liu, Rong R; Wu, Pei P; Ogrodzki, Pauline P; Mahmoud, Sally S; Liang, Ke K; Liu, Pengjuan P; Francis, Stephen S SS; Khalak, Hanif H; Liu, Denghui D; Li, Junhua J; Ma, Tao T; Chen, Fang F; Liu, Weibin W; Huang, Xinyu X; He, Wenjun W; Yuan, Zhaorong Z; Qiao, Nan N; Meng, Xin X; Alqarni, Budoor B; Quilez, Javier J; Kusuma, Vinay V; Lin, Long L; Jin, Xin X; Yang, Chongguang C; Anton, Xavier X; Koshy, Ashish A; Yang, Huanming H; Xu, Xun X; Wang, Jian J; Xiao, Peng P; Al Kaabi, Nawal N; Fasihuddin, Mohammed Saifuddin MS; Selvaraj, Francis Amirtharaj FA; Weber, Stefan S; Al Hosani, Farida Ismail FI; Liu, Siyang S; Zaher, Walid Abbas WA

Publication Date: 2021-07-07

Variant appearance in text: 225: 69T>C

PubMed Link: 34234167

Variant Present in the following documents:

• 41598_2021_92851_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

---

Integrated molecular drivers coordinate biological and clinical states in melanoma.

Nature Genetics

Conway, Jake R JR; Dietlein, Felix F; Taylor-Weiner, Amaro A; AlDubayan, Saud S; Vokes, Natalie N; Keenan, Tanya T; Reardon, Brendan B; He, Meng Xiao MX; Margolis, Claire A CA; Weirather, Jason L JL; Haq, Rizwan R; Schilling, Bastian B; Stephen Hodi, F F; Schadendorf, Dirk D; Liu, David D; Van Allen, Eliezer M EM

Publication Date: 2020-12

Variant appearance in text: 225: F23F

PubMed Link: 33230298

Variant Present in the following documents:

• NIHMS1637640-supplement-SuppData1.xlsx, sheet 1

View BVdb publication page

---

North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study.

Frontiers In Plant Science

Banoo, Aqleema A; Nabi, Asha A; Rasool, Rovidha S RS; Mahiya-Farooq, ; Shah, Mehraj D MD; Ahmad, Mushtaq M; Sofi, Parvaze A PA; Aasiya-Nabi, ; Itoo, Hamidullah H; Sharma, P N PN; Padder, Bilal A BA

Publication Date: 2020

Variant appearance in text: 225: 69T>C

PubMed Link: 33123180

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

View BVdb publication page

---

A vaccine-based nanosystem for initiating innate immunity and improving tumor immunotherapy.

Nature Communications

Zheng, Di-Wei DW; Gao, Fan F; Cheng, Qian Q; Bao, Peng P; Dong, Xue X; Fan, Jin-Xuan JX; Song, Wen W; Zeng, Xuan X; Cheng, Si-Xue SX; Zhang, Xian-Zheng XZ

Publication Date: 2020-04-24

Variant appearance in text: 225: F23F

PubMed Link: 32332752

Variant Present in the following documents:

• 41467_2020_15927_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

---

A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology.

Plos Computational Biology

Zhao, Chen C; Mirando, Adam C AC; Sové, Richard J RJ; Medeiros, Thalyta X TX; Annex, Brian H BH; Popel, Aleksander S AS

Publication Date: 2019-11

Variant appearance in text: 225: f23=

PubMed Link: 31738746

Variant Present in the following documents:

• pcbi.1007468.s001.pdf

View BVdb publication page

---

Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq.

Frontiers In Plant Science

Li, Wenli W; Riday, Heathcliffe H; Riehle, Christina C; Edwards, Andrea A; Dinkins, Randy R

Publication Date: 2019

Variant appearance in text: 225: 69T>C

PubMed Link: 31708937

Variant Present in the following documents:

• DataSheet_2.xlsx, sheet 1

View BVdb publication page

---

Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: 225: 69T>C

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

---

Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

Cuypers, Bart B; Berg, Maya M; Imamura, Hideo H; Dumetz, Franck F; De Muylder, Géraldine G; Domagalska, Malgorzata A MA; Rijal, Suman S; Bhattarai, Narayan Raj NR; Maes, Ilse I; Sanders, Mandy M; Cotton, James A JA; Meysman, Pieter P; Laukens, Kris K; Dujardin, Jean-Claude JC

Publication Date: 2018-08

Variant appearance in text: 225: 69T>C

PubMed Link: 29679745

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

---

Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 69T>C

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: 225: F23F

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_1.xlsx, sheet 1
• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 2
• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 1

View BVdb publication page

---

A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: 225: F23F

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

---

Smoking and alcohol consumption patterns among elderly Canadians with mobility disabilities.

Bmc Research Notes

Liu, Fang F; Woodrow, Jennifer J; Loucks-Atkinson, Angela A; Buehler, Sharon S; West, Roy R; Wang, Peizhong Peter PP

Publication Date: 2013-06-04

Variant appearance in text: 225: F23=

PubMed Link: 23731926

Variant Present in the following documents:

• 1756-0500-6-218-S1.pdf

View BVdb publication page

---