Publications:

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A45N

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3

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Genomic and microenvironmental heterogeneity shaping epithelial-to-mesenchymal trajectories in cancer.

Nature Communications

Malagoli Tagliazucchi, Guidantonio G; Wiecek, Anna J AJ; Withnell, Eloise E; Secrier, Maria M

Publication Date: 2023-02-11

Variant appearance in text: 225: A45N

PubMed Link: 36774358

Variant Present in the following documents:

• 41467_2023_36439_MOESM8_ESM.xlsx, sheet 34

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Identification of an unfolded protein response-related signature for predicting the prognosis of pancreatic ductal adenocarcinoma.

Frontiers In Oncology

Fang, Lishan L; Chen, Shaojing S; Gong, Hui H; Xia, Shaohua S; Guan, Sainan S; Quan, Nali N; Li, Yajie Y; Zeng, Chao C; Chen, Ya Y; Du, Jianhang J; Liu, Shuguang S

Publication Date: 2022

Variant appearance in text: 225: A45N

PubMed Link: 36727081

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

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Overexpression of CENPL mRNA potentially regulated by miR-340-3p predicts the prognosis of pancreatic cancer patients.

Bmc Cancer

Cui, Zhongyuan Z; Du, Ling L; Wang, Jielong J; Li, Zhongzhuan Z; Xu, Jiehong J; Ou, Shiyu S; Li, Dongliang D; Li, Shasha S; Hu, Hanfang H; Chen, Gang G; Wu, Zhixian Z

Publication Date: 2022-12-26

Variant appearance in text: 225: A45N

PubMed Link: 36572856

Variant Present in the following documents:

• 12885_2022_10450_MOESM2_ESM.xlsx, sheet 1

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mTOR inhibition attenuates chemosensitivity through the induction of chemotherapy resistant persisters.

Nature Communications

Liu, Yuanhui Y; Azizian, Nancy G NG; Sullivan, Delaney K DK; Li, Yulin Y

Publication Date: 2022-11-17

Variant appearance in text: 225: A45N

PubMed Link: 36396656

Variant Present in the following documents:

• 41467_2022_34890_MOESM11_ESM.xlsx, sheet 10

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Construction of immune-related signature and identification of S100A14 determining immune-suppressive microenvironment in pancreatic cancer.

Bmc Cancer

Wang, Chengcheng C; Chen, Yuan Y; Xinpeng, Yin Y; Xu, Ruiyuan R; Song, Jianlu J; Ruze, Rexiati R; Xu, Qiang Q; Zhao, Yupei Y

Publication Date: 2022-08-11

Variant appearance in text: 225: A45N

PubMed Link: 35953822

Variant Present in the following documents:

• 12885_2022_9927_MOESM3_ESM.pdf

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Identification of Prognosis-Related Molecular Subgroups and Construction of a Prognostic Prediction Model Using Immune-Related Genes in Pancreatic Cancer.

Journal Of Oncology

Fei, Xiang X; Kong, Lingming L; Shi, Chao C; Wang, Gang G; Liu, Chenhai C; Wang, Cheng C; Liu, Peng P; Tan, Xiaodong X

Publication Date: 2022

Variant appearance in text: 225: A45N

PubMed Link: 35712127

Variant Present in the following documents:

• 7117014.f1.xlsx, sheet 1

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Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A45N

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

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Tumor Microenvironment Profiling Identifies Prognostic Signatures and Suggests Immunotherapeutic Benefits in Neuroblastoma.

Frontiers In Cell And Developmental Biology

Feng, Chenzhao C; Li, Ting T; Xiao, Jun J; Wang, Jing J; Meng, Xinyao X; Niu, Huizhong H; Jiang, Bin B; Huang, Lei L; Deng, Xiaogeng X; Yan, Xueqiang X; Wu, Dianming D; Fang, Yifan Y; Lin, Yu Y; Chen, Feng F; Wu, Xiaojuan X; Zhao, Xiang X; Feng, Jiexiong J

Publication Date: 2022

Variant appearance in text: 225: A45N

PubMed Link: 35493068

Variant Present in the following documents:

• Table1.xlsx, sheet 9

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CDKN2A Deletion Leading to Hematogenous Metastasis of Human Gastric Carcinoma.

Frontiers In Oncology

Qiao, Juanli J; Tian, Yuan Y; Cheng, Xiaojing X; Liu, Zhaojun Z; Zhou, Jing J; Gu, Liankun L; Zhang, Baozhen B; Zhang, Lianhai L; Ji, Jiafu J; Xing, Rui R; Deng, Dajun D

Publication Date: 2021

Variant appearance in text: 225: A45N

PubMed Link: 35004325

Variant Present in the following documents:

• DataSheet_1.xlsx, sheet 2

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Embeddings from protein language models predict conservation and variant effects.

Human Genetics

Marquet, Céline C; Heinzinger, Michael M; Olenyi, Tobias T; Dallago, Christian C; Erckert, Kyra K; Bernhofer, Michael M; Nechaev, Dmitrii D; Rost, Burkhard B

Publication Date: 2022-10

Variant appearance in text: 225: A45N

PubMed Link: 34967936

Variant Present in the following documents:

• 439_2021_2411_MOESM3_ESM.xlsx, sheet 34

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A45N

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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TP53 isoform junction reads based analysis in malignant and normal contexts.

Scientific Reports

Vural, Suleyman S; Chang, Lun-Ching LC; Yee, Laura M LM; Sonkin, Dmitriy D

Publication Date: 2021-08-26

Variant appearance in text: 225: A45N

PubMed Link: 34446762

Variant Present in the following documents:

• 41598_2021_96700_MOESM1_ESM.xlsx, sheet 2

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Mapping Microproteins and ncRNA-Encoded Polypeptides in Different Mouse Tissues.

Frontiers In Cell And Developmental Biology

Pan, Ni N; Wang, Zhiwei Z; Wang, Bing B; Wan, Jian J; Wan, Cuihong C

Publication Date: 2021

Variant appearance in text: 225: A45N

PubMed Link: 34381774

Variant Present in the following documents:

• Table_4.xlsx, sheet 2

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WDR5-H3K4me3 epigenetic axis regulates OPN expression to compensate PD-L1 function to promote pancreatic cancer immune escape.

Journal For Immunotherapy Of Cancer

Lu, Chunwan C; Liu, Zhuoqi Z; Klement, John D JD; Yang, Dafeng D; Merting, Alyssa D AD; Poschel, Dakota D; Albers, Thomas T; Waller, Jennifer L JL; Shi, Huidong H; Liu, Kebin K

Publication Date: 2021-07

Variant appearance in text: 225: A45N

PubMed Link: 34326167

Variant Present in the following documents:

• jitc-2021-002624supp001.pdf

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Chromosomal copy number heterogeneity predicts survival rates across cancers.

Nature Communications

van Dijk, Erik E; van den Bosch, Tom T; Lenos, Kristiaan J KJ; El Makrini, Khalid K; Nijman, Lisanne E LE; van Essen, Hendrik F B HFB; Lansu, Nico N; Boekhout, Michiel M; Hageman, Joris H JH; Fitzgerald, Rebecca C RC; Punt, Cornelis J A CJA; Tuynman, Jurriaan B JB; Snippert, Hugo J G HJG; Kops, Geert J P L GJPL; Medema, Jan Paul JP; Ylstra, Bauke B; Vermeulen, Louis L; Miedema, Daniël M DM

Publication Date: 2021-05-27

Variant appearance in text: 225: A45N

PubMed Link: 34045449

Variant Present in the following documents:

• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 58
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 59
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 66
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 62
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 63
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 61
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 65
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 60
• 41467_2021_23384_MOESM4_ESM.xlsx, sheet 1
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 64

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The EGFR-HSF1 axis accelerates the tumorigenesis of pancreatic cancer.

Journal Of Experimental & Clinical Cancer Research : Cr

Qian, Weikun W; Chen, Ke K; Qin, Tao T; Xiao, Ying Y; Li, Jie J; Yue, Yangyang Y; Zhou, Cancan C; Ma, Jiguang J; Duan, Wanxing W; Lei, Jianjun J; Han, Liang L; Li, Li L; Shen, Xin X; Wu, Zheng Z; Ma, Qingyong Q; Wang, Zheng Z

Publication Date: 2021-01-09

Variant appearance in text: 225: A45N

PubMed Link: 33422093

Variant Present in the following documents:

• 13046_2020_1823_MOESM2_ESM.xlsx, sheet 7

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A45N

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

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A Prognostic Prediction Model Developed Based on Four CpG Sites and Weighted Correlation Network Analysis Identified DNAJB1 as a Novel Biomarker for Pancreatic Cancer.

Frontiers In Oncology

Kong, Lingming L; Liu, Peng P; Fei, Xiang X; Wu, Tianyu T; Wang, Zhongpeng Z; Zhang, Baohui B; Li, Jiatong J; Tan, Xiaodong X

Publication Date: 2020

Variant appearance in text: 225: A45N

PubMed Link: 32984053

Variant Present in the following documents:

• Data_Sheet_2.xlsx, sheet 1

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Gene Signature and Identification of Clinical Trait-Related m6 A Regulators in Pancreatic Cancer.

Frontiers In Genetics

Hou, Jie J; Wang, Zhan Z; Li, Hong H; Zhang, Hongzhi H; Luo, Lan L

Publication Date: 2020

Variant appearance in text: 225: A45N

PubMed Link: 32754191

Variant Present in the following documents:

• Table_2.xlsx, sheet 1

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The benefits of smoking cessation on survival in cancer patients by integrative analysis of multi-omics data.

Molecular Oncology

Yang, Sheng S; Liu, Tong T; Liang, Geyu G

Publication Date: 2020-09

Variant appearance in text: 225: A45N

PubMed Link: 32580248

Variant Present in the following documents:

• MOL2-14-2069-s002.xlsx, sheet 7

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BAP1 is a haploinsufficient tumor suppressor linking chronic pancreatitis to pancreatic cancer in mice.

Nature Communications

Perkail, Stephanie S; Andricovich, Jaclyn J; Kai, Yan Y; Tzatsos, Alexandros A

Publication Date: 2020-06-15

Variant appearance in text: 225: A45N

PubMed Link: 32541668

Variant Present in the following documents:

• 41467_2020_16589_MOESM3_ESM.xlsx, sheet 2

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Identification of DNA methylation-driven genes by integrative analysis of DNA methylation and transcriptome data in pancreatic adenocarcinoma.

Experimental And Therapeutic Medicine

Zhang, Wei W; Shang, Shuai S; Yang, Yingying Y; Lu, Peiyao P; Wang, Teng T; Cui, Xinyi X; Tang, Xuexi X

Publication Date: 2020-04

Variant appearance in text: 225: A45N

PubMed Link: 32256782

Variant Present in the following documents:

• Supplementary_Data.pdf

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Lack of detectable neoantigen depletion signals in the untreated cancer genome.

Nature Genetics

Van den Eynden, Jimmy J; Jiménez-Sánchez, Alejandro A; Miller, Martin L ML; Larsson, Erik E

Publication Date: 2019-12

Variant appearance in text: 225: A45N

PubMed Link: 31768072

Variant Present in the following documents:

• EMS84665-supplement-Suppl__table_2.xlsx, sheet 2

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Differential secretome of pancreatic cancer cells in serum-containing conditioned medium reveals CCT8 as a new biomarker of pancreatic cancer invasion and metastasis.

Cancer Cell International

Liu, Peng P; Kong, Lingming L; Jin, Haoyi H; Wu, Yunhao Y; Tan, Xiaodong X; Song, Bing B

Publication Date: 2019

Variant appearance in text: 225: A45N

PubMed Link: 31632196

Variant Present in the following documents:

• 12935_2019_980_MOESM5_ESM.xlsx, sheet 4
• 12935_2019_980_MOESM5_ESM.xlsx, sheet 3
• 12935_2019_980_MOESM5_ESM.xlsx, sheet 2
• 12935_2019_980_MOESM5_ESM.xlsx, sheet 5

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High Expression of FAM83B Predicts Poor Prognosis in Patients with Pancreatic Ductal Adenocarcinoma and Correlates with Cell Cycle and Cell Proliferation.

Journal Of Cancer

Shen, Chao-Qin CQ; Yan, Ting-Ting TT; Liu, Wei W; Zhu, Xiao-Qiang XQ; Tian, Xiang-Long XL; Fu, Xue-Liang XL; Hua, Rong R; Zhang, Jun-Feng JF; Huo, Yan-Miao YM; Liu, De-Jun DJ; Yang, Jian-Yu JY; Sun, Yong-Wei YW; Fang, Jing-Yuan JY; Chen, Hao-Yan HY; Hong, Jie J

Publication Date: 2017

Variant appearance in text: 225: A45N

PubMed Link: 29158787

Variant Present in the following documents:

• jcav08p3154s6.xlsx, sheet 1

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Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A45N

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

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Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate.

Elife

Juul, Malene M; Bertl, Johanna J; Guo, Qianyun Q; Nielsen, Morten Muhlig MM; Świtnicki, Michał M; Hornshøj, Henrik H; Madsen, Tobias T; Hobolth, Asger A; Pedersen, Jakob Skou JS

Publication Date: 2017-03-31

Variant appearance in text: 225: A45N

PubMed Link: 28362259

Variant Present in the following documents:

• elife-21778-supp5.xlsx, sheet 5

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