Publications:

---

Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A45F

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

---

Recapitulating thyroid cancer histotypes through engineering embryonic stem cells.

Nature Communications

Veschi, Veronica V; Turdo, Alice A; Modica, Chiara C; Verona, Francesco F; Di Franco, Simone S; Gaggianesi, Miriam M; Tirrò, Elena E; Di Bella, Sebastiano S; Iacono, Melania Lo ML; Pantina, Vincenzo Davide VD; Porcelli, Gaetana G; Mangiapane, Laura Rosa LR; Bianca, Paola P; Rizzo, Aroldo A; Sciacca, Elisabetta E; Pillitteri, Irene I; Vella, Veronica V; Belfiore, Antonino A; Bongiorno, Maria Rita MR; Pistone, Giuseppe G; Memeo, Lorenzo L; Colarossi, Lorenzo L; Giuffrida, Dario D; Colarossi, Cristina C; Vigneri, Paolo P; Todaro, Matilde M; Stassi, Giorgio G

Publication Date: 2023-03-11

Variant appearance in text: 225: a45f

PubMed Link: 36906579

Variant Present in the following documents:

• 41467_2023_36922_MOESM4_ESM.xls, sheet 2

View BVdb publication page

---

Simulating the restoration of normal gene expression from different thyroid cancer stages using deep learning.

Bmc Cancer

Nelligan, Nicole M NM; Bender, M Reed MR; Feltus, F Alex FA

Publication Date: 2022-06-04

Variant appearance in text: 225: A45F

PubMed Link: 35659616

Variant Present in the following documents:

• 12885_2022_9704_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A45F

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

View BVdb publication page

---

Embeddings from protein language models predict conservation and variant effects.

Human Genetics

Marquet, Céline C; Heinzinger, Michael M; Olenyi, Tobias T; Dallago, Christian C; Erckert, Kyra K; Bernhofer, Michael M; Nechaev, Dmitrii D; Rost, Burkhard B

Publication Date: 2022-10

Variant appearance in text: 225: A45F

PubMed Link: 34967936

Variant Present in the following documents:

• 439_2021_2411_MOESM3_ESM.xlsx, sheet 34

View BVdb publication page

---

Single-cell transcriptomic analysis of the tumor ecosystems underlying initiation and progression of papillary thyroid carcinoma.

Nature Communications

Pu, Weilin W; Shi, Xiao X; Yu, Pengcheng P; Zhang, Meiying M; Liu, Zhiyan Z; Tan, Licheng L; Han, Peizhen P; Wang, Yu Y; Ji, Dongmei D; Gan, Hualei H; Wei, Wenjun W; Lu, Zhongwu Z; Qu, Ning N; Hu, Jiaqian J; Hu, Xiaohua X; Luo, Zaili Z; Li, Huajun H; Ji, Qinghai Q; Wang, Jiucun J; Zhang, Xiaoming X; Wang, Yu-Long YL

Publication Date: 2021-10-18

Variant appearance in text: 225: A45F

PubMed Link: 34663816

Variant Present in the following documents:

• 41467_2021_26343_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

---

Significance of CD8+ T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma.

Aging

Tian, Yuan Y; Wei, Yumei Y; Liu, Hongmei H; Shang, Heli H; Xu, Yuedong Y; Wu, Tong T; Liu, Wei W; Huang, Alan A; Dang, Qi Q; Sun, Yuping Y

Publication Date: 2021-10-04

Variant appearance in text: 225: A45F

PubMed Link: 34606472

Variant Present in the following documents:

• aging-13-203584-s003.xlsx, sheet 1
• aging-13-203584-s003.xlsx, sheet 3

View BVdb publication page

---

Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A45F

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

View BVdb publication page

---

Chromosomal copy number heterogeneity predicts survival rates across cancers.

Nature Communications

van Dijk, Erik E; van den Bosch, Tom T; Lenos, Kristiaan J KJ; El Makrini, Khalid K; Nijman, Lisanne E LE; van Essen, Hendrik F B HFB; Lansu, Nico N; Boekhout, Michiel M; Hageman, Joris H JH; Fitzgerald, Rebecca C RC; Punt, Cornelis J A CJA; Tuynman, Jurriaan B JB; Snippert, Hugo J G HJG; Kops, Geert J P L GJPL; Medema, Jan Paul JP; Ylstra, Bauke B; Vermeulen, Louis L; Miedema, Daniël M DM

Publication Date: 2021-05-27

Variant appearance in text: 225: A45F

PubMed Link: 34045449

Variant Present in the following documents:

• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 66
• 41467_2021_23384_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

---

Functional Outcomes of Arthroscopic Combined Anterior Cruciate Ligament Reconstruction and Meniscal Repair: A Retrospective Analysis.

Arthroscopy, Sports Medicine, And Rehabilitation

Pathak, Shirish S; Bharadwaj, Abhinav A; Patil, Prateek P; Raut, Sudarshan S; Rv, Srikanth S

Publication Date: 2020-04

Variant appearance in text: 225: A45F

PubMed Link: 32368741

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Interplay between DNA damage repair and apoptosis shapes cancer evolution through aneuploidy and microsatellite instability.

Nature Communications

Auslander, Noam N; Wolf, Yuri I YI; Koonin, Eugene V EV

Publication Date: 2020-03-06

Variant appearance in text: 225: A45F

PubMed Link: 32144251

Variant Present in the following documents:

• 41467_2020_15094_MOESM9_ESM.xlsx, sheet 1
• 41467_2020_15094_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

---

Integrated multi-omics analysis of genomics, epigenomics, and transcriptomics in ovarian carcinoma.

Aging

Zheng, Mingjun M; Hu, Yuexin Y; Gou, Rui R; Wang, Jing J; Nie, Xin X; Li, Xiao X; Liu, Qing Q; Liu, Juanjuan J; Lin, Bei B

Publication Date: 2019-06-29

Variant appearance in text: 225: a45f

PubMed Link: 31257224

Variant Present in the following documents:

• aging-11-102047-s002.xlsx, sheet 1

View BVdb publication page

---

Using structural diversity to measure the complexity of technologies.

Plos One

Broekel, Tom T

Publication Date: 2019

Variant appearance in text: 225: A45F

PubMed Link: 31112571

Variant Present in the following documents:

• pone.0216856.s006.pdf

View BVdb publication page

---

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

Cell

Liu, Jianfang J; Lichtenberg, Tara T; Hoadley, Katherine A KA; Poisson, Laila M LM; Lazar, Alexander J AJ; Cherniack, Andrew D AD; Kovatich, Albert J AJ; Benz, Christopher C CC; Levine, Douglas A DA; Lee, Adrian V AV; Omberg, Larsson L; Wolf, Denise M DM; Shriver, Craig D CD; Thorsson, Vesteinn V; , ; Hu, Hai H

Publication Date: 2018-04-05

Variant appearance in text: 225: A45F

PubMed Link: 29625055

Variant Present in the following documents:

• NIHMS978596-supplement-1.xlsx, sheet 3
• NIHMS978596-supplement-1.xlsx, sheet 1

View BVdb publication page

---

Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A45F

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

View BVdb publication page

---

Understanding the Dynamic Convergence Phenomenon from the Perspective of Diversity and Persistence: A Cross-Sector Comparative Analysis between the United States and South Korea.

Plos One

Shim, We W; Kwon, Oh-Jin OJ; Moon, Yeong-Ho YH; Kim, Keun-Hwan KH

Publication Date: 2016

Variant appearance in text: 225: A45F

PubMed Link: 27416495

Variant Present in the following documents:

• pone.0159249.s003.xlsx, sheet 7
• pone.0159249.s005.xlsx, sheet 2
• pone.0159249.s005.xlsx, sheet 3
• pone.0159249.s003.xlsx, sheet 1
• pone.0159249.s003.xlsx, sheet 10
• pone.0159249.s003.xlsx, sheet 2
• pone.0159249.s003.xlsx, sheet 9
• pone.0159249.s003.xlsx, sheet 4
• pone.0159249.s003.xlsx, sheet 5
• pone.0159249.s003.xlsx, sheet 3

View BVdb publication page

---

A systematic revision of Operclipygus Marseul (Coleoptera, Histeridae, Exosternini).

Zookeys

Caterino, Michael S MS; Tishechkin, Alexey K AK

Publication Date: 2013

Variant appearance in text: 225: A45F

PubMed Link: 23717185

Variant Present in the following documents:

• ZooKeys-271-001.pdf

View BVdb publication page

---