Embeddings from protein language models predict conservation and variant effects.
Human Genetics
Marquet, Céline C; Heinzinger, Michael M; Olenyi, Tobias T; Dallago, Christian C; Erckert, Kyra K; Bernhofer, Michael M; Nechaev, Dmitrii D; Rost, Burkhard B
Significance of CD8+ T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma.
Aging
Tian, Yuan Y; Wei, Yumei Y; Liu, Hongmei H; Shang, Heli H; Xu, Yuedong Y; Wu, Tong T; Liu, Wei W; Huang, Alan A; Dang, Qi Q; Sun, Yuping Y
Chromosomal copy number heterogeneity predicts survival rates across cancers.
Nature Communications
van Dijk, Erik E; van den Bosch, Tom T; Lenos, Kristiaan J KJ; El Makrini, Khalid K; Nijman, Lisanne E LE; van Essen, Hendrik F B HFB; Lansu, Nico N; Boekhout, Michiel M; Hageman, Joris H JH; Fitzgerald, Rebecca C RC; Punt, Cornelis J A CJA; Tuynman, Jurriaan B JB; Snippert, Hugo J G HJG; Kops, Geert J P L GJPL; Medema, Jan Paul JP; Ylstra, Bauke B; Vermeulen, Louis L; Miedema, Daniël M DM
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.
Cell
Liu, Jianfang J; Lichtenberg, Tara T; Hoadley, Katherine A KA; Poisson, Laila M LM; Lazar, Alexander J AJ; Cherniack, Andrew D AD; Kovatich, Albert J AJ; Benz, Christopher C CC; Levine, Douglas A DA; Lee, Adrian V AV; Omberg, Larsson L; Wolf, Denise M DM; Shriver, Craig D CD; Thorsson, Vesteinn V; , ; Hu, Hai H