Publications:

---

Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A45Q

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

---

Immune Infiltration-Related ceRNA Network Revealing Potential Biomarkers for Prognosis of Head and Neck Squamous Cell Carcinoma.

Disease Markers

Zhao, Shuai S; Peng, Mengle M; Wang, Zhongquan Z; Cao, Jingjing J; Zhang, Xinyu X; Yu, Ruijing R; Huang, Tao T; Lian, Wenping W

Publication Date: 2022

Variant appearance in text: 225: A45Q

PubMed Link: 36097539

Variant Present in the following documents:

• 1014347.f2.pdf

View BVdb publication page

---

Comprehensive analyses of PDHA1 that serves as a predictive biomarker for immunotherapy response in cancer.

Frontiers In Pharmacology

Deng, Langmei L; Jiang, Anqi A; Zeng, Hanqing H; Peng, Xiaoji X; Song, Liying L

Publication Date: 2022

Variant appearance in text: 225: A45Q

PubMed Link: 36003495

Variant Present in the following documents:

• table4.xlsx, sheet 1

View BVdb publication page

---

Tumor Microenvironment Profiling Identifies Prognostic Signatures and Suggests Immunotherapeutic Benefits in Neuroblastoma.

Frontiers In Cell And Developmental Biology

Feng, Chenzhao C; Li, Ting T; Xiao, Jun J; Wang, Jing J; Meng, Xinyao X; Niu, Huizhong H; Jiang, Bin B; Huang, Lei L; Deng, Xiaogeng X; Yan, Xueqiang X; Wu, Dianming D; Fang, Yifan Y; Lin, Yu Y; Chen, Feng F; Wu, Xiaojuan X; Zhao, Xiang X; Feng, Jiexiong J

Publication Date: 2022

Variant appearance in text: 225: A45Q

PubMed Link: 35493068

Variant Present in the following documents:

• Table1.xlsx, sheet 9

View BVdb publication page

---

Identification of the Nerve-Cancer Cross-Talk-Related Prognostic Gene Model in Head and Neck Squamous Cell Carcinoma.

Frontiers In Oncology

Li, Jun J; Xu, Yunhong Y; Peng, Gang G; Zhu, Kuikui K; Wu, Zilong Z; Shi, Liangliang L; Wu, Gang G

Publication Date: 2021

Variant appearance in text: 225: A45Q

PubMed Link: 34912722

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

View BVdb publication page

---

Allele-specific genomic data elucidate the role of somatic gain and copy-number neutral loss of heterozygosity in cancer.

Cell Systems

Ciani, Yari Y; Fedrizzi, Tarcisio T; Prandi, Davide D; Lorenzin, Francesca F; Locallo, Alessio A; Gasperini, Paola P; Franceschini, Gian Marco GM; Benelli, Matteo M; Elemento, Olivier O; Fava, Luca L LL; Inga, Alberto A; Demichelis, Francesca F

Publication Date: 2022-02-16

Variant appearance in text: 225: A45Q

PubMed Link: 34731645

Variant Present in the following documents:

• mmc2.xlsx, sheet 1

View BVdb publication page

---

The spliceosome pathway activity correlates with reduced anti-tumor immunity and immunotherapy response, and unfavorable clinical outcomes in pan-cancer.

Computational And Structural Biotechnology Journal

Chen, Zuobing Z; Chen, Canping C; Li, Lin L; Zhang, Tianfang T; Wang, Xiaosheng X

Publication Date: 2021

Variant appearance in text: 225: A45Q

PubMed Link: 34667536

Variant Present in the following documents:

• mmc3.xlsx, sheet 3

View BVdb publication page

---

POLE/POLD1 mutation in non-exonuclease domain matters for predicting efficacy of immune-checkpoint-inhibitor therapy.

Clinical And Translational Medicine

Chen, Yan-Xing YX; Wang, Zi-Xian ZX; Yuan, Shu-Qiang SQ; Jiang, Teng-Jia TJ; Huang, You-Sheng YS; Xu, Rui-Hua RH; Wang, Feng F; Zhao, Qi Q

Publication Date: 2021-09

Variant appearance in text: 225: A45Q

PubMed Link: 34586735

Variant Present in the following documents:

• CTM2-11-e524-s001.xlsx, sheet 4

View BVdb publication page

---

Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A45Q

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

View BVdb publication page

---

Fast mutual exclusivity algorithm nominates potential synthetic lethal gene pairs through brute force matrix product computations.

Computational And Structural Biotechnology Journal

Fedrizzi, Tarcisio T; Ciani, Yari Y; Lorenzin, Francesca F; Cantore, Thomas T; Gasperini, Paola P; Demichelis, Francesca F

Publication Date: 2021

Variant appearance in text: 225: A45Q

PubMed Link: 34429855

Variant Present in the following documents:

• mmc2.xlsx, sheet 2

View BVdb publication page

---

Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A45Q

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

View BVdb publication page

---

CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications.

Elife

Franch-Expósito, Sebastià S; Bassaganyas, Laia L; Vila-Casadesús, Maria M; Hernández-Illán, Eva E; Esteban-Fabró, Roger R; Díaz-Gay, Marcos M; Lozano, Juan José JJ; Castells, Antoni A; Llovet, Josep Maria JM; Castellví-Bel, Sergi S; Camps, Jordi J

Publication Date: 2020-01-15

Variant appearance in text: 225: A45Q

PubMed Link: 31939734

Variant Present in the following documents:

• elife-50267-fig1-figsupp1-data1.xlsx, sheet 1

View BVdb publication page

---

APOBEC3A is a prominent cytidine deaminase in breast cancer.

Plos Genetics

Cortez, Luis M LM; Brown, Amber L AL; Dennis, Madeline A MA; Collins, Christopher D CD; Brown, Alexander J AJ; Mitchell, Debra D; Mertz, Tony M TM; Roberts, Steven A SA

Publication Date: 2019-12

Variant appearance in text: 225: A45Q

PubMed Link: 31841499

Variant Present in the following documents:

• pgen.1008545.s016.xlsx, sheet 10

View BVdb publication page

---

A novel long non-coding RNA, AC012456.4, as a valuable and independent prognostic biomarker of survival in oral squamous cell carcinoma.

Peerj

Hu, Xuegang X; Qiu, Zailing Z; Zeng, Jianchai J; Xiao, Tingting T; Ke, Zhihong Z; Lyu, Hongbing H

Publication Date: 2018

Variant appearance in text: 225: A45Q

PubMed Link: 30128179

Variant Present in the following documents:

• peerj-06-5307-s001.xls, sheet 1

View BVdb publication page

---

A comprehensive characterization of cis-acting splicing-associated variants in human cancer.

Genome Research

Shiraishi, Yuichi Y; Kataoka, Keisuke K; Chiba, Kenichi K; Okada, Ai A; Kogure, Yasunori Y; Tanaka, Hiroko H; Ogawa, Seishi S; Miyano, Satoru S

Publication Date: 2018-08

Variant appearance in text: 225: A45Q

PubMed Link: 30012835

Variant Present in the following documents:

• supp_gr.231951.117_Supplemental_Table_S2.xlsx, sheet 1

View BVdb publication page

---

Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A45Q

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

View BVdb publication page

---

Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India.

Clinical Epigenetics

Basu, Baidehi B; Chakraborty, Joyeeta J; Chandra, Aditi A; Katarkar, Atul A; Baldevbhai, Jadav Ritesh Kumar JRK; Dhar Chowdhury, Debjit D; Ray, Jay Gopal JG; Chaudhuri, Keya K; Chatterjee, Raghunath R

Publication Date: 2017

Variant appearance in text: 225: A45Q

PubMed Link: 28174608

Variant Present in the following documents:

• 13148_2017_314_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

---