Publications:

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A45X

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1

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An integrated analysis of the cancer genome atlas data discovers a hierarchical association structure across thirty three cancer types.

Plos Digital Health

Tiong, Khong-Loon KL; Sintupisut, Nardnisa N; Lin, Min-Chin MC; Cheng, Chih-Hung CH; Woolston, Andrew A; Lin, Chih-Hsu CH; Ho, Mirrian M; Lin, Yu-Wei YW; Padakanti, Sridevi S; Yeang, Chen-Hsiang CH

Publication Date: 2022-12

Variant appearance in text: 225: A45X

PubMed Link: 36812605

Variant Present in the following documents:

• pdig.0000151.s021.xlsx, sheet 6

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Immune Infiltration-Related ceRNA Network Revealing Potential Biomarkers for Prognosis of Head and Neck Squamous Cell Carcinoma.

Disease Markers

Zhao, Shuai S; Peng, Mengle M; Wang, Zhongquan Z; Cao, Jingjing J; Zhang, Xinyu X; Yu, Ruijing R; Huang, Tao T; Lian, Wenping W

Publication Date: 2022

Variant appearance in text: 225: A45X

PubMed Link: 36097539

Variant Present in the following documents:

• 1014347.f2.pdf

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Comprehensive analyses of PDHA1 that serves as a predictive biomarker for immunotherapy response in cancer.

Frontiers In Pharmacology

Deng, Langmei L; Jiang, Anqi A; Zeng, Hanqing H; Peng, Xiaoji X; Song, Liying L

Publication Date: 2022

Variant appearance in text: 225: A45X

PubMed Link: 36003495

Variant Present in the following documents:

• table4.xlsx, sheet 1

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A hypoxia-related lncRNA model for prediction of head and neck squamous cell carcinoma prognosis.

Cancer Medicine

Xiang, Junwei J; He, Yaodong Y; Li, Yunshan Y; Wu, Kexuan K; Cheng, Mengxiang M; Wang, Yuanyin Y; Chen, Ran R

Publication Date: 2022-08-03

Variant appearance in text: 225: A45X

PubMed Link: 35920349

Variant Present in the following documents:

• CAM4-12-3773-s005.xlsx, sheet 1

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Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A45X

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

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The spliceosome pathway activity correlates with reduced anti-tumor immunity and immunotherapy response, and unfavorable clinical outcomes in pan-cancer.

Computational And Structural Biotechnology Journal

Chen, Zuobing Z; Chen, Canping C; Li, Lin L; Zhang, Tianfang T; Wang, Xiaosheng X

Publication Date: 2021

Variant appearance in text: 225: A45X

PubMed Link: 34667536

Variant Present in the following documents:

• mmc3.xlsx, sheet 3

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POLE/POLD1 mutation in non-exonuclease domain matters for predicting efficacy of immune-checkpoint-inhibitor therapy.

Clinical And Translational Medicine

Chen, Yan-Xing YX; Wang, Zi-Xian ZX; Yuan, Shu-Qiang SQ; Jiang, Teng-Jia TJ; Huang, You-Sheng YS; Xu, Rui-Hua RH; Wang, Feng F; Zhao, Qi Q

Publication Date: 2021-09

Variant appearance in text: 225: A45X

PubMed Link: 34586735

Variant Present in the following documents:

• CTM2-11-e524-s001.xlsx, sheet 4

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A45X

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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Immune-Inhibitory Gene Expression is Positively Correlated with Overall Immune Activity and Predicts Increased Survival Probability of Cervical and Head and Neck Cancer Patients.

Frontiers In Molecular Biosciences

Budhwani, Megha M; Turrell, Gavin G; Yu, Meihua M; Frazer, Ian H IH; Mehdi, Ahmed M AM; Chandra, Janin J

Publication Date: 2021

Variant appearance in text: 225: A45X

PubMed Link: 33834038

Variant Present in the following documents:

• table1.xlsx, sheet 5

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A45X

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

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The benefits of smoking cessation on survival in cancer patients by integrative analysis of multi-omics data.

Molecular Oncology

Yang, Sheng S; Liu, Tong T; Liang, Geyu G

Publication Date: 2020-09

Variant appearance in text: 225: A45X

PubMed Link: 32580248

Variant Present in the following documents:

• MOL2-14-2069-s002.xlsx, sheet 4

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High expression of oxidative phosphorylation genes predicts improved survival in squamous cell carcinomas of the head and neck and lung.

Scientific Reports

Frederick, Mitchell M; Skinner, Heath D HD; Kazi, Sawad A SA; Sikora, Andrew G AG; Sandulache, Vlad C VC

Publication Date: 2020-04-14

Variant appearance in text: 225: A45X

PubMed Link: 32286489

Variant Present in the following documents:

• 41598_2020_63448_MOESM2_ESM.xlsx, sheet 13
• 41598_2020_63448_MOESM2_ESM.xlsx, sheet 6

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APOBEC3A is a prominent cytidine deaminase in breast cancer.

Plos Genetics

Cortez, Luis M LM; Brown, Amber L AL; Dennis, Madeline A MA; Collins, Christopher D CD; Brown, Alexander J AJ; Mitchell, Debra D; Mertz, Tony M TM; Roberts, Steven A SA

Publication Date: 2019-12

Variant appearance in text: 225: A45X

PubMed Link: 31841499

Variant Present in the following documents:

• pgen.1008545.s016.xlsx, sheet 10

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A novel long non-coding RNA, AC012456.4, as a valuable and independent prognostic biomarker of survival in oral squamous cell carcinoma.

Peerj

Hu, Xuegang X; Qiu, Zailing Z; Zeng, Jianchai J; Xiao, Tingting T; Ke, Zhihong Z; Lyu, Hongbing H

Publication Date: 2018

Variant appearance in text: 225: A45X

PubMed Link: 30128179

Variant Present in the following documents:

• peerj-06-5307-s001.xls, sheet 1

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A comprehensive characterization of cis-acting splicing-associated variants in human cancer.

Genome Research

Shiraishi, Yuichi Y; Kataoka, Keisuke K; Chiba, Kenichi K; Okada, Ai A; Kogure, Yasunori Y; Tanaka, Hiroko H; Ogawa, Seishi S; Miyano, Satoru S

Publication Date: 2018-08

Variant appearance in text: 225: A45X

PubMed Link: 30012835

Variant Present in the following documents:

• supp_gr.231951.117_Supplemental_Table_S2.xlsx, sheet 1

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Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A45X

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

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Genome-wide DNA methylation profile identified a unique set of differentially methylated immune genes in oral squamous cell carcinoma patients in India.

Clinical Epigenetics

Basu, Baidehi B; Chakraborty, Joyeeta J; Chandra, Aditi A; Katarkar, Atul A; Baldevbhai, Jadav Ritesh Kumar JRK; Dhar Chowdhury, Debjit D; Ray, Jay Gopal JG; Chaudhuri, Keya K; Chatterjee, Raghunath R

Publication Date: 2017

Variant appearance in text: 225: A45X

PubMed Link: 28174608

Variant Present in the following documents:

• 13148_2017_314_MOESM3_ESM.xlsx, sheet 1

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