Publications:

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A51K

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 2
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 4

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Two subtypes of cutaneous melanoma with distinct mutational signatures and clinico-genomic characteristics.

Frontiers In Genetics

Kim, Yoon-Seob YS; Lee, Minho M; Chung, Yeun-Jun YJ

Publication Date: 2022

Variant appearance in text: 225: A51K

PubMed Link: 36246650

Variant Present in the following documents:

• DataSheet2.xlsx, sheet 3

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Monitoring of the SARS-CoV-2 Omicron BA.1/BA.2 lineage transition in the Swedish population reveals increased viral RNA levels in BA.2 cases.

Med (New York, N.Y.)

Lentini, Antonio A; Pereira, Antonio A; Winqvist, Ola O; Reinius, Björn B

Publication Date: 2022-09-09

Variant appearance in text: 225: A51K

PubMed Link: 35981541

Variant Present in the following documents:

• mmc7.xlsx, sheet 1

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The clinical significance of integrin subunit alpha V in cancers: from small cell lung carcinoma to pan-cancer.

Bmc Pulmonary Medicine

Tang, Yu-Lu YL; Li, Guo-Sheng GS; Li, Dong-Ming DM; Tang, Deng D; Huang, Jie-Zhuang JZ; Feng, Hao H; He, Rong-Quan RQ; Huang, Zhi-Guang ZG; Dang, Yi-Wu YW; Kong, Jin-Liang JL; Gan, Ting-Qing TQ; Zhou, Hua-Fu HF; Zeng, Jing-Jing JJ; Chen, Gang G

Publication Date: 2022-08-04

Variant appearance in text: 225: A51K

PubMed Link: 35927660

Variant Present in the following documents:

• 12890_2022_2095_MOESM2_ESM.xlsx, sheet 2

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A platform for oncogenomic reporting and interpretation.

Nature Communications

Reisle, Caralyn C; Williamson, Laura M LM; Pleasance, Erin E; Davies, Anna A; Pellegrini, Brayden B; Bleile, Dustin W DW; Mungall, Karen L KL; Chuah, Eric E; Jones, Martin R MR; Ma, Yussanne Y; Lewis, Eleanor E; Beckie, Isaac I; Pham, David D; Matiello Pletz, Raphael R; Muhammadzadeh, Amir A; Pierce, Brandon M BM; Li, Jacky J; Stevenson, Ross R; Wong, Hansen H; Bailey, Lance L; Reisle, Abbey A; Douglas, Matthew M; Bonakdar, Melika M; Nelson, Jessica M T JMT; Grisdale, Cameron J CJ; Krzywinski, Martin M; Fisic, Ana A; Mitchell, Teresa T; Renouf, Daniel J DJ; Yip, Stephen S; Laskin, Janessa J; Marra, Marco A MA; Jones, Steven J M SJM

Publication Date: 2022-02-09

Variant appearance in text: 225: A51K

PubMed Link: 35140225

Variant Present in the following documents:

• 41467_2022_28348_MOESM4_ESM.xlsx, sheet 9

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The spliceosome pathway activity correlates with reduced anti-tumor immunity and immunotherapy response, and unfavorable clinical outcomes in pan-cancer.

Computational And Structural Biotechnology Journal

Chen, Zuobing Z; Chen, Canping C; Li, Lin L; Zhang, Tianfang T; Wang, Xiaosheng X

Publication Date: 2021

Variant appearance in text: 225: A51K

PubMed Link: 34667536

Variant Present in the following documents:

• mmc3.xlsx, sheet 3

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A51K

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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Reprogramming of bivalent chromatin states in NRAS mutant melanoma suggests PRC2 inhibition as a therapeutic strategy.

Cell Reports

Terranova, Christopher J CJ; Tang, Ming M; Maitituoheti, Mayinuer M; Raman, Ayush T AT; Ghosh, Archit K AK; Schulz, Jonathan J; Amin, Samir B SB; Orouji, Elias E; Tomczak, Katarzyna K; Sarkar, Sharmistha S; Oba, Junna J; Creasy, Caitlin C; Wu, Chang-Jiun CJ; Khan, Samia S; Lazcano, Rossana R; Wani, Khalida K; Singh, Anand A; Barrodia, Praveen P; Zhao, Dongyu D; Chen, Kaifu K; Haydu, Lauren E LE; Wang, Wei-Lien WL; Lazar, Alexander J AJ; Woodman, Scott E SE; Bernatchez, Chantale C; Rai, Kunal K

Publication Date: 2021-07-20

Variant appearance in text: 225: A51K

PubMed Link: 34289358

Variant Present in the following documents:

• NIHMS1727018-supplement-2.xlsx, sheet 1

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A51K

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

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The mutational landscape of melanoma brain metastases presenting as the first visceral site of recurrence.

British Journal Of Cancer

Rabbie, Roy R; Ferguson, Peter P; Wong, Kim K; Couturier, Dominique-Laurent DL; Moran, Una U; Turner, Clinton C; Emanuel, Patrick P; Haas, Kerstin K; Saunus, Jodi M JM; Davidson, Morgan R MR; Lakhani, Sunil R SR; Shivalingam, Brindha B; Long, Georgina V GV; Parkinson, Christine C; Osman, Iman I; Scolyer, Richard A RA; Corrie, Pippa P; Adams, David J DJ

Publication Date: 2021-01

Variant appearance in text: 225: A51K

PubMed Link: 33024263

Variant Present in the following documents:

• 41416_2020_1090_MOESM2_ESM.xlsx, sheet 2

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Interplay between DNA damage repair and apoptosis shapes cancer evolution through aneuploidy and microsatellite instability.

Nature Communications

Auslander, Noam N; Wolf, Yuri I YI; Koonin, Eugene V EV

Publication Date: 2020-03-06

Variant appearance in text: 225: A51K

PubMed Link: 32144251

Variant Present in the following documents:

• 41467_2020_15094_MOESM9_ESM.xlsx, sheet 1

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Predicting clinical benefit of immunotherapy by antigenic or functional mutations affecting tumour immunogenicity.

Nature Communications

Kim, Kwoneel K; Kim, Hong Sook HS; Kim, Jeong Yeon JY; Jung, Hyunchul H; Sun, Jong-Mu JM; Ahn, Jin Seok JS; Ahn, Myung-Ju MJ; Park, Keunchil K; Lee, Se-Hoon SH; Choi, Jung Kyoon JK

Publication Date: 2020-02-19

Variant appearance in text: 225: A51K

PubMed Link: 32075964

Variant Present in the following documents:

• 41467_2020_14562_MOESM11_ESM.xlsx, sheet 13

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Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A51K

PubMed Link: 28809811

Variant Present in the following documents:

• Main text

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