Publications:

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A51W

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1

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Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer.

Nature Communications

Cotto, Kelsy C KC; Feng, Yang-Yang YY; Ramu, Avinash A; Richters, Megan M; Freshour, Sharon L SL; Skidmore, Zachary L ZL; Xia, Huiming H; McMichael, Joshua F JF; Kunisaki, Jason J; Campbell, Katie M KM; Chen, Timothy Hung-Po TH; Rozycki, Emily B EB; Adkins, Douglas D; Devarakonda, Siddhartha S; Sankararaman, Sumithra S; Lin, Yiing Y; Chapman, William C WC; Maher, Christopher A CA; Arora, Vivek V; Dunn, Gavin P GP; Uppaluri, Ravindra R; Govindan, Ramaswamy R; Griffith, Obi L OL; Griffith, Malachi M

Publication Date: 2023-03-22

Variant appearance in text: 225: A51W

PubMed Link: 36949070

Variant Present in the following documents:

• 41467_2023_37266_MOESM19_ESM.xlsx, sheet 18

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Persistent mutation burden drives sustained anti-tumor immune responses.

Nature Medicine

Niknafs, Noushin N; Balan, Archana A; Cherry, Christopher C; Hummelink, Karlijn K; Monkhorst, Kim K; Shao, Xiaoshan M XM; Belcaid, Zineb Z; Marrone, Kristen A KA; Murray, Joseph J; Smith, Kellie N KN; Levy, Benjamin B; Feliciano, Josephine J; Hann, Christine L CL; Lam, Vincent V; Pardoll, Drew M DM; Karchin, Rachel R; Seiwert, Tanguy Y TY; Brahmer, Julie R JR; Forde, Patrick M PM; Velculescu, Victor E VE; Anagnostou, Valsamo V

Publication Date: 2023-01-26

Variant appearance in text: 225: A51W

PubMed Link: 36702947

Variant Present in the following documents:

• 41591_2022_2163_MOESM3_ESM.xlsx, sheet 4

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Immune Infiltration-Related ceRNA Network Revealing Potential Biomarkers for Prognosis of Head and Neck Squamous Cell Carcinoma.

Disease Markers

Zhao, Shuai S; Peng, Mengle M; Wang, Zhongquan Z; Cao, Jingjing J; Zhang, Xinyu X; Yu, Ruijing R; Huang, Tao T; Lian, Wenping W

Publication Date: 2022

Variant appearance in text: 225: A51W

PubMed Link: 36097539

Variant Present in the following documents:

• 1014347.f2.pdf

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The clinical significance of integrin subunit alpha V in cancers: from small cell lung carcinoma to pan-cancer.

Bmc Pulmonary Medicine

Tang, Yu-Lu YL; Li, Guo-Sheng GS; Li, Dong-Ming DM; Tang, Deng D; Huang, Jie-Zhuang JZ; Feng, Hao H; He, Rong-Quan RQ; Huang, Zhi-Guang ZG; Dang, Yi-Wu YW; Kong, Jin-Liang JL; Gan, Ting-Qing TQ; Zhou, Hua-Fu HF; Zeng, Jing-Jing JJ; Chen, Gang G

Publication Date: 2022-08-04

Variant appearance in text: 225: A51W

PubMed Link: 35927660

Variant Present in the following documents:

• 12890_2022_2095_MOESM2_ESM.xlsx, sheet 2
• 12890_2022_2095_MOESM2_ESM.xlsx, sheet 3

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Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A51W

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

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Frequent somatic gene conversion as a mechanism for loss of heterozygosity in tumor suppressor genes.

Genome Research

Takahashi, Kazuki K KK; Innan, Hideki H

Publication Date: 2022-06

Variant appearance in text: 225: A51W

PubMed Link: 35618418

Variant Present in the following documents:

• supp_gr.276617.122_Supplemental_Tables.xlsx, sheet 1

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Tumor Microenvironment Profiling Identifies Prognostic Signatures and Suggests Immunotherapeutic Benefits in Neuroblastoma.

Frontiers In Cell And Developmental Biology

Feng, Chenzhao C; Li, Ting T; Xiao, Jun J; Wang, Jing J; Meng, Xinyao X; Niu, Huizhong H; Jiang, Bin B; Huang, Lei L; Deng, Xiaogeng X; Yan, Xueqiang X; Wu, Dianming D; Fang, Yifan Y; Lin, Yu Y; Chen, Feng F; Wu, Xiaojuan X; Zhao, Xiang X; Feng, Jiexiong J

Publication Date: 2022

Variant appearance in text: 225: A51W

PubMed Link: 35493068

Variant Present in the following documents:

• Table1.xlsx, sheet 9

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Concurrent delivery of immune checkpoint blockade modulates T cell dynamics to enhance neoantigen vaccine-generated antitumor immunity.

Nature Cancer

Liu, Longchao L; Chen, Jiahui J; Zhang, Hongyi H; Ye, Jianfeng J; Moore, Casey C; Lu, Changzheng C; Fang, Yan Y; Fu, Yang-Xin YX; Li, Bo B

Publication Date: 2022-04

Variant appearance in text: 225: A51W

PubMed Link: 35393580

Variant Present in the following documents:

• NIHMS1784010-supplement-SourceData_Fig6.xlsx, sheet 8

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CDKN2A Deletion Leading to Hematogenous Metastasis of Human Gastric Carcinoma.

Frontiers In Oncology

Qiao, Juanli J; Tian, Yuan Y; Cheng, Xiaojing X; Liu, Zhaojun Z; Zhou, Jing J; Gu, Liankun L; Zhang, Baozhen B; Zhang, Lianhai L; Ji, Jiafu J; Xing, Rui R; Deng, Dajun D

Publication Date: 2021

Variant appearance in text: 225: A51W

PubMed Link: 35004325

Variant Present in the following documents:

• DataSheet_1.xlsx, sheet 2

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POLE/POLD1 mutation in non-exonuclease domain matters for predicting efficacy of immune-checkpoint-inhibitor therapy.

Clinical And Translational Medicine

Chen, Yan-Xing YX; Wang, Zi-Xian ZX; Yuan, Shu-Qiang SQ; Jiang, Teng-Jia TJ; Huang, You-Sheng YS; Xu, Rui-Hua RH; Wang, Feng F; Zhao, Qi Q

Publication Date: 2021-09

Variant appearance in text: 225: A51W

PubMed Link: 34586735

Variant Present in the following documents:

• CTM2-11-e524-s001.xlsx, sheet 4

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A51W

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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VAV2 is required for DNA repair and implicated in cancer radiotherapy resistance.

Signal Transduction And Targeted Therapy

Liu, Weiling W; Miao, Chuanwang C; Zhang, Shaosen S; Liu, Yachen Y; Niu, Xiangjie X; Xi, Yiyi Y; Guo, Wenjia W; Chu, Jiahui J; Lin, Ai A; Liu, Hongjin H; Yang, Xinyu X; Chen, Xinjie X; Zhong, Ce C; Ma, Yuling Y; Wang, Yuqian Y; Zhu, Shihao S; Liu, Shuning S; Tan, Wen W; Lin, Dongxin D; Wu, Chen C

Publication Date: 2021-08-30

Variant appearance in text: 225: A51W

PubMed Link: 34462423

Variant Present in the following documents:

• 41392_2021_735_MOESM8_ESM.xlsx, sheet 1

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A51W

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

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The benefits of smoking cessation on survival in cancer patients by integrative analysis of multi-omics data.

Molecular Oncology

Yang, Sheng S; Liu, Tong T; Liang, Geyu G

Publication Date: 2020-09

Variant appearance in text: 225: A51W

PubMed Link: 32580248

Variant Present in the following documents:

• MOL2-14-2069-s002.xlsx, sheet 4

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Interplay between DNA damage repair and apoptosis shapes cancer evolution through aneuploidy and microsatellite instability.

Nature Communications

Auslander, Noam N; Wolf, Yuri I YI; Koonin, Eugene V EV

Publication Date: 2020-03-06

Variant appearance in text: 225: A51W

PubMed Link: 32144251

Variant Present in the following documents:

• 41467_2020_15094_MOESM9_ESM.xlsx, sheet 1

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Landscape of B cell immunity and related immune evasion in human cancers.

Nature Genetics

Hu, Xihao X; Zhang, Jian J; Wang, Jin J; Fu, Jingxin J; Li, Taiwen T; Zheng, Xiaoqi X; Wang, Binbin B; Gu, Shengqing S; Jiang, Peng P; Fan, Jingyu J; Ying, Xiaomin X; Zhang, Jing J; Carroll, Michael C MC; Wucherpfennig, Kai W KW; Hacohen, Nir N; Zhang, Fan F; Zhang, Peng P; Liu, Jun S JS; Li, Bo B; Liu, X Shirley XS

Publication Date: 2019-03

Variant appearance in text: 225: A51W

PubMed Link: 30742113

Variant Present in the following documents:

• NIHMS1516974-supplement-3.xlsx, sheet 1

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Negative Regulation of BOK Expression by Recruitment of TRIM28 to Regulatory Elements in Its 3' Untranslated Region.

Iscience

Fernandez-Marrero, Yuniel Y; Bachmann, Daniel D; Lauber, Emanuel E; Kaufmann, Thomas T

Publication Date: 2018-11-30

Variant appearance in text: 225: A51W

PubMed Link: 30471638

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

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Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A51W

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

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Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology.

Scientific Reports

Martinez, Victor D VD; Vucic, Emily A EA; Thu, Kelsie L KL; Hubaux, Roland R; Enfield, Katey S S KS; Pikor, Larissa A LA; Becker-Santos, Daiana D DD; Brown, Carolyn J CJ; Lam, Stephen S; Lam, Wan L WL

Publication Date: 2015-05-27

Variant appearance in text: 225: A51W

PubMed Link: 26013764

Variant Present in the following documents:

• srep10423-s3.xls, sheet 1

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