EGR1 c.152C>A ;(p.A51D)

Variant ID: 5-137801602-C-A

NM_001964.2(EGR1):c.152C>A;(p.A51D)

This variant was identified in 35 publications

View GRCh38 version.




Publications:


Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports
Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y
Publication Date: 2023-05-30

Variant appearance in text: 225: A51D
PubMed Link: 37253775
Variant Present in the following documents:
  • 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3
  • 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
View BVdb publication page



Genomic and microenvironmental heterogeneity shaping epithelial-to-mesenchymal trajectories in cancer.

Nature Communications
Malagoli Tagliazucchi, Guidantonio G; Wiecek, Anna J AJ; Withnell, Eloise E; Secrier, Maria M
Publication Date: 2023-02-11

Variant appearance in text: 225: A51D
PubMed Link: 36774358
Variant Present in the following documents:
  • 41467_2023_36439_MOESM8_ESM.xlsx, sheet 34
View BVdb publication page



Persistent mutation burden drives sustained anti-tumor immune responses.

Nature Medicine
Niknafs, Noushin N; Balan, Archana A; Cherry, Christopher C; Hummelink, Karlijn K; Monkhorst, Kim K; Shao, Xiaoshan M XM; Belcaid, Zineb Z; Marrone, Kristen A KA; Murray, Joseph J; Smith, Kellie N KN; Levy, Benjamin B; Feliciano, Josephine J; Hann, Christine L CL; Lam, Vincent V; Pardoll, Drew M DM; Karchin, Rachel R; Seiwert, Tanguy Y TY; Brahmer, Julie R JR; Forde, Patrick M PM; Velculescu, Victor E VE; Anagnostou, Valsamo V
Publication Date: 2023-01-26

Variant appearance in text: 225: A51D
PubMed Link: 36702947
Variant Present in the following documents:
  • 41591_2022_2163_MOESM3_ESM.xlsx, sheet 4
View BVdb publication page



Pan-cancer analyses reveal multi-omics and clinical characteristics of RIO kinase 2 in cancer.

Frontiers In Chemistry
Li, Kexin K; Zou, Jiahua J; Yan, Haizhao H; Li, Yuqing Y; Li, Man-Mei MM; Liu, Zhong Z
Publication Date: 2022

Variant appearance in text: 225: A51D
PubMed Link: 36518977
Variant Present in the following documents:
  • DataSheet3.xls, sheet 6
View BVdb publication page



Comprehensive analyses of PDHA1 that serves as a predictive biomarker for immunotherapy response in cancer.

Frontiers In Pharmacology
Deng, Langmei L; Jiang, Anqi A; Zeng, Hanqing H; Peng, Xiaoji X; Song, Liying L
Publication Date: 2022

Variant appearance in text: 225: A51D
PubMed Link: 36003495
Variant Present in the following documents:
  • table4.xlsx, sheet 1
View BVdb publication page



Construction of a novel necroptosis-related lncRNA signature for prognosis prediction in esophageal cancer.

Bmc Gastroenterology
Liu, Yang Y; Hao, Hongyu H; Kang, Lin L; Zheng, Guona G; Guo, Xiaowan X; Li, Bingjie B; Zhao, Huanfen H; Hao, Han H
Publication Date: 2022-07-15

Variant appearance in text: 225: A51D
PubMed Link: 35840890
Variant Present in the following documents:
  • 12876_2022_2421_MOESM7_ESM.xls, sheet 1
View BVdb publication page



Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology
Huang, Tao T; He, Wei-Ying WY
Publication Date: 2022

Variant appearance in text: 225: A51D
PubMed Link: 35646943
Variant Present in the following documents:
  • Table1.xlsx, sheet 5
View BVdb publication page



Development and validation of a weakly supervised deep learning framework to predict the status of molecular pathways and key mutations in colorectal cancer from routine histology images: a retrospective study.

The Lancet. Digital Health
Bilal, Mohsin M; Raza, Shan E Ahmed SEA; Azam, Ayesha A; Graham, Simon S; Ilyas, Mohammad M; Cree, Ian A IA; Snead, David D; Minhas, Fayyaz F; Rajpoot, Nasir M NM
Publication Date: 2021-12

Variant appearance in text: 225: a51d
PubMed Link: 34686474
Variant Present in the following documents:
  • mmc2.xlsx, sheet 8
View BVdb publication page



Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience
Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D
Publication Date: 2021-08-31

Variant appearance in text: 225: A51D
PubMed Link: 34465388
Variant Present in the following documents:
  • 13578_2021_675_MOESM4_ESM.pdf
View BVdb publication page



TP53 isoform junction reads based analysis in malignant and normal contexts.

Scientific Reports
Vural, Suleyman S; Chang, Lun-Ching LC; Yee, Laura M LM; Sonkin, Dmitriy D
Publication Date: 2021-08-26

Variant appearance in text: 225: A51D
PubMed Link: 34446762
Variant Present in the following documents:
  • 41598_2021_96700_MOESM1_ESM.xlsx, sheet 3
View BVdb publication page



Pan-cancer analysis of CD274 (PD-L1) mutations in 314,631 patient samples and subset correlation with PD-L1 protein expression.

Journal For Immunotherapy Of Cancer
Huang, Richard S P RSP; Decker, Brennan B; Murugesan, Karthikeyan K; Hiemenz, Matthew M; Mata, Douglas A DA; Li, Gerald G; Creeden, James J; Ramkissoon, Shakti H SH; Ross, Jeffrey S JS
Publication Date: 2021-06

Variant appearance in text: 225: A51D
PubMed Link: 34130989
Variant Present in the following documents:
  • jitc-2021-002558supp001.pdf
View BVdb publication page



Chromosomal copy number heterogeneity predicts survival rates across cancers.

Nature Communications
van Dijk, Erik E; van den Bosch, Tom T; Lenos, Kristiaan J KJ; El Makrini, Khalid K; Nijman, Lisanne E LE; van Essen, Hendrik F B HFB; Lansu, Nico N; Boekhout, Michiel M; Hageman, Joris H JH; Fitzgerald, Rebecca C RC; Punt, Cornelis J A CJA; Tuynman, Jurriaan B JB; Snippert, Hugo J G HJG; Kops, Geert J P L GJPL; Medema, Jan Paul JP; Ylstra, Bauke B; Vermeulen, Louis L; Miedema, Daniël M DM
Publication Date: 2021-05-27

Variant appearance in text: 225: A51D
PubMed Link: 34045449
Variant Present in the following documents:
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 58
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 59
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 62
  • 41467_2021_23384_MOESM4_ESM.xlsx, sheet 1
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 60
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 66
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 63
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 65
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 61
  • 41467_2021_23384_MOESM7_ESM.xlsx, sheet 64
View BVdb publication page



The impact of ABO blood groups on clinical outcomes and susceptibility to COVID-19: A retrospective study in an unselected population.

Transfusion
Al-Youha, Sarah A SA; Alduaij, Waleed W; Al-Serri, Ahmad A; Almazeedi, Sulaiman M SM; Al-Haddad, Mohannad M; Jamal, Mohammad H MH; Shih, Andrew W AW; Al-Sabah, Salman K SK
Publication Date: 2021-05

Variant appearance in text: 225: A51D
PubMed Link: 33682150
Variant Present in the following documents:
  • Main text
View BVdb publication page



Air temperature and diet influence body composition and water turnover in zoo-living African elephants (Loxodonta africana).

Royal Society Open Science
Pontzer, Herman H; Rimbach, Rebecca R; Paltan, Jenny J; Ivory, Erin L EL; Kendall, Corinne J CJ
Publication Date: 2020-11

Variant appearance in text: 225: A51D
PubMed Link: 33391799
Variant Present in the following documents:
  • Main text
View BVdb publication page



Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine
Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J
Publication Date: 2020-11

Variant appearance in text: 225: A51D
PubMed Link: 33313252
Variant Present in the following documents:
  • atm-08-22-1507-supplementary.pdf
View BVdb publication page



Prediction of clinically relevant Pancreatico-enteric Anastomotic Fistulas after Pancreatoduodenectomy using deep learning of Preoperative Computed Tomography.

Theranostics
Mu, Wei W; Liu, Chang C; Gao, Feng F; Qi, Yafei Y; Lu, Hong H; Liu, Zaiyi Z; Zhang, Xianyi X; Cai, Xiaoli X; Ji, Ruo Yun RY; Hou, Yang Y; Tian, Jie J; Shi, Yu Y
Publication Date: 2020

Variant appearance in text: 225: A51D
PubMed Link: 32863959
Variant Present in the following documents:
  • Main text
View BVdb publication page



DNA mismatch repair promotes APOBEC3-mediated diffuse hypermutation in human cancers.

Nature Genetics
Mas-Ponte, David D; Supek, Fran F
Publication Date: 2020-09

Variant appearance in text: 225: A51D
PubMed Link: 32747826
Variant Present in the following documents:
  • EMS118039-supplement-Supplementary_Tables_1_10.xlsx, sheet 5
View BVdb publication page



Characterization of super-enhancer-associated functional lncRNAs acting as ceRNAs in ESCC.

Molecular Oncology
Wang, Qiu-Yu QY; Peng, Liu L; Chen, Yang Y; Liao, Lian-Di LD; Chen, Jia-Xin JX; Li, Meng M; Li, Yan-Yu YY; Qian, Feng-Cui FC; Zhang, Yue-Xin YX; Wang, Fan F; Li, Chun-Quan CQ; Lin, De-Chen DC; Xu, Li-Yan LY; Li, En-Min EM
Publication Date: 2020-09

Variant appearance in text: 225: A51D
PubMed Link: 32460441
Variant Present in the following documents:
  • MOL2-14-2203-s010.xlsx, sheet 3
View BVdb publication page



Menstrual Cycle Length and Patterns in a Global Cohort of Women Using a Mobile Phone App: Retrospective Cohort Study.

Journal Of Medical Internet Research
Grieger, Jessica A JA; Norman, Robert J RJ
Publication Date: 2020-06-24

Variant appearance in text: 225: A51D
PubMed Link: 32442161
Variant Present in the following documents:
  • Main text
View BVdb publication page



Interplay between DNA damage repair and apoptosis shapes cancer evolution through aneuploidy and microsatellite instability.

Nature Communications
Auslander, Noam N; Wolf, Yuri I YI; Koonin, Eugene V EV
Publication Date: 2020-03-06

Variant appearance in text: 225: A51D
PubMed Link: 32144251
Variant Present in the following documents:
  • 41467_2020_15094_MOESM4_ESM.xlsx, sheet 1
View BVdb publication page



Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq.

Frontiers In Plant Science
Li, Wenli W; Riday, Heathcliffe H; Riehle, Christina C; Edwards, Andrea A; Dinkins, Randy R
Publication Date: 2019

Variant appearance in text: 225: 152C>A
PubMed Link: 31708937
Variant Present in the following documents:
  • DataSheet_2.xlsx, sheet 1
View BVdb publication page



Systematic profiling identifies PDLIM2 as a novel prognostic predictor for oesophageal squamous cell carcinoma (ESCC).

Journal Of Cellular And Molecular Medicine
Song, Guiqin G; Xu, Jun J; He, Lang L; Sun, Xiao X; Xiong, Rong R; Luo, Yuxi Y; Hu, Xin X; Zhang, Ruolan R; Yue, Qiuju Q; Liu, Kang K; Feng, Gang G
Publication Date: 2019-08

Variant appearance in text: 225: A51D
PubMed Link: 31222932
Variant Present in the following documents:
  • JCMM-23-5751-s004.xlsx, sheet 1
View BVdb publication page



The strong propensity of Cadherin-23 for aggregation inhibits cell migration.

Molecular Oncology
Sannigrahi, Malay K MK; Srinivas, Cheerneni S CS; Deokate, Nilesh N; Rakshit, Sabyasachi S
Publication Date: 2019-05

Variant appearance in text: 225: A51D
PubMed Link: 30747484
Variant Present in the following documents:
  • MOL2-13-1092-s002.xlsx, sheet 9
View BVdb publication page



Landscape of B cell immunity and related immune evasion in human cancers.

Nature Genetics
Hu, Xihao X; Zhang, Jian J; Wang, Jin J; Fu, Jingxin J; Li, Taiwen T; Zheng, Xiaoqi X; Wang, Binbin B; Gu, Shengqing S; Jiang, Peng P; Fan, Jingyu J; Ying, Xiaomin X; Zhang, Jing J; Carroll, Michael C MC; Wucherpfennig, Kai W KW; Hacohen, Nir N; Zhang, Fan F; Zhang, Peng P; Liu, Jun S JS; Li, Bo B; Liu, X Shirley XS
Publication Date: 2019-03

Variant appearance in text: 225: A51D
PubMed Link: 30742113
Variant Present in the following documents:
  • NIHMS1516974-supplement-3.xlsx, sheet 2
  • NIHMS1516974-supplement-3.xlsx, sheet 3
View BVdb publication page



Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology
Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D
Publication Date: 2019-01-15

Variant appearance in text: 225: 152C>A
PubMed Link: 30646861
Variant Present in the following documents:
  • 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1
View BVdb publication page



Negative Regulation of BOK Expression by Recruitment of TRIM28 to Regulatory Elements in Its 3' Untranslated Region.

Iscience
Fernandez-Marrero, Yuniel Y; Bachmann, Daniel D; Lauber, Emanuel E; Kaufmann, Thomas T
Publication Date: 2018-11-30

Variant appearance in text: 225: A51D
PubMed Link: 30471638
Variant Present in the following documents:
  • mmc3.xlsx, sheet 1
View BVdb publication page



Criticality in tumor evolution and clinical outcome.

Proceedings Of The National Academy Of Sciences Of The United States Of America
Persi, Erez E; Wolf, Yuri I YI; Leiserson, Mark D M MDM; Koonin, Eugene V EV; Ruppin, Eytan E
Publication Date: 2018-11-20

Variant appearance in text: 225: A51D
PubMed Link: 30404913
Variant Present in the following documents:
  • pnas.1807256115.sd01.xlsx, sheet 3
View BVdb publication page



Maftools: efficient and comprehensive analysis of somatic variants in cancer.

Genome Research
Mayakonda, Anand A; Lin, De-Chen DC; Assenov, Yassen Y; Plass, Christoph C; Koeffler, H Phillip HP
Publication Date: 2018-11

Variant appearance in text: 225: A51D
PubMed Link: 30341162
Variant Present in the following documents:
  • supp_gr.239244.118_Supplemental_Table_S2.xlsx, sheet 1
View BVdb publication page



Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation.

Bioinformatics (Oxford, England)
Usmanova, Dinara R DR; Bogatyreva, Natalya S NS; Ariño Bernad, Joan J; Eremina, Aleksandra A AA; Gorshkova, Anastasiya A AA; Kanevskiy, German M GM; Lonishin, Lyubov R LR; Meister, Alexander V AV; Yakupova, Alisa G AG; Kondrashov, Fyodor A FA; Ivankov, Dmitry N DN
Publication Date: 2018-11-01

Variant appearance in text: 225: A51D
PubMed Link: 29722803
Variant Present in the following documents:
  • bty340_table_s2.xlsx, sheet 1
View BVdb publication page



Early diagnostic potential of APC hypermethylation in esophageal cancer.

Cancer Management And Research
Wang, Bujiang B; Song, Haojun H; Jiang, Haizhong H; Fu, Yangbo Y; Ding, Xiaoyun X; Zhou, Chongchang C
Publication Date: 2018

Variant appearance in text: 225: A51D
PubMed Link: 29440928
Variant Present in the following documents:
  • Main text
View BVdb publication page



Mutation Clusters from Cancer Exome.

Genes
Kakushadze, Zura Z; Yu, Willie W
Publication Date: 2017-08-15

Variant appearance in text: 225: A51D
PubMed Link: 28809811
Variant Present in the following documents:
  • Main text
  • genes-08-00201.pdf
View BVdb publication page



Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics
Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ
Publication Date: 2017-02-15

Variant appearance in text: 225: 152C>A
PubMed Link: 28202015
Variant Present in the following documents:
  • 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1
View BVdb publication page



Mutational landscape of gingivo-buccal oral squamous cell carcinoma reveals new recurrently-mutated genes and molecular subgroups.

Nature Communications
,
Publication Date: 2013

Variant appearance in text: 225: A51D
PubMed Link: 24292195
Variant Present in the following documents:
  • ncomms3873-s2.xls, sheet 1
View BVdb publication page



Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat.

Cell
Atanur, Santosh S SS; Diaz, Ana Garcia AG; Maratou, Klio K; Sarkis, Allison A; Rotival, Maxime M; Game, Laurence L; Tschannen, Michael R MR; Kaisaki, Pamela J PJ; Otto, Georg W GW; Ma, Man Chun John MC; Keane, Thomas M TM; Hummel, Oliver O; Saar, Kathrin K; Chen, Wei W; Guryev, Victor V; Gopalakrishnan, Kathirvel K; Garrett, Michael R MR; Joe, Bina B; Citterio, Lorena L; Bianchi, Giuseppe G; McBride, Martin M; Dominiczak, Anna A; Adams, David J DJ; Serikawa, Tadao T; Flicek, Paul P; Cuppen, Edwin E; Hubner, Norbert N; Petretto, Enrico E; Gauguier, Dominique D; Kwitek, Anne A; Jacob, Howard H; Aitman, Timothy J TJ
Publication Date: 2013-08-01

Variant appearance in text: 225: 152C>A
PubMed Link: 23890820
Variant Present in the following documents:
  • mmc5.xlsx, sheet 1
View BVdb publication page