Publications:

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Spatial genomic diversity associated with APOBEC mutagenesis in squamous cell carcinoma arising from ovarian teratoma.

Cancer Science

Tamura, Ryo R; Nakaoka, Hirofumi H; Yachida, Nozomi N; Ueda, Haruka H; Ishiguro, Tatsuya T; Motoyama, Teiichi T; Inoue, Ituro I; Enomoto, Takayuki T; Yoshihara, Kosuke K

Publication Date: 2023-02-10

Variant appearance in text: 225: 153C>T

PubMed Link: 36762791

Variant Present in the following documents:

• CAS-114-2145-s001.xlsx, sheet 6

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The role of costimulatory molecules in glioma biology and immune microenvironment.

Frontiers In Genetics

Wang, Ji J; Wang, Zi Z; Jia, Wenxue W; Gong, Wei W; Dong, Bokai B; Wang, Zhuangzhuang Z; Zhou, Meng M; Tian, Chunlei C

Publication Date: 2022

Variant appearance in text: 225: a51a

PubMed Link: 36437961

Variant Present in the following documents:

• Table1.xlsx, sheet 4

View BVdb publication page

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Integrated proteogenomic characterization across major histological types of pituitary neuroendocrine tumors.

Cell Research

Zhang, Fan F; Zhang, Qilin Q; Zhu, Jiajun J; Yao, Boyuan B; Ma, Chi C; Qiao, Nidan N; He, Shiman S; Ye, Zhao Z; Wang, Yunzhi Y; Han, Rui R; Feng, Jinwen J; Wang, Yongfei Y; Qin, Zhaoyu Z; Ma, Zengyi Z; Li, Kai K; Zhang, Yichao Y; Tian, Sha S; Chen, Zhengyuan Z; Tan, Subei S; Wu, Yue Y; Ran, Peng P; Wang, Ye Y; Ding, Chen C; Zhao, Yao Y

Publication Date: 2022-12

Variant appearance in text: 225: 153C>T

PubMed Link: 36307579

Variant Present in the following documents:

• 41422_2022_736_MOESM10_ESM.xlsx, sheet 3

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Next-generation whole exome sequencing to delineate the genetic basis of primary congenital glaucoma.

Scientific Reports

Rauf, Bushra B; Khan, Shahid Y SY; Jiao, Xiaodong X; Irum, Bushra B; Ashfaq, Ramla R; Zehra, Mubashra M; Khan, Asma A AA; Naeem, Muhammad Asif MA; Shahzad, Mohsin M; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-10-14

Variant appearance in text: 225: A51A

PubMed Link: 36241656

Variant Present in the following documents:

• 41598_2022_20939_MOESM13_ESM.xlsx, sheet 2
• 41598_2022_20939_MOESM15_ESM.xlsx, sheet 2

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A genomic deletion encompassing CRYBB2-CRYBB2P1 is responsible for autosomal recessive congenital cataracts.

Human Genome Variation

Irum, Bushra B; Kabir, Firoz F; Shoshany, Nadav N; Khan, Shahid Y SY; Rauf, Bushra B; Naeem, Muhammad Asif MA; Qaiser, Tanveer A TA; Riazuddin, Sheikh S; Hejtmancik, J Fielding JF; Riazuddin, S Amer SA

Publication Date: 2022-09-08

Variant appearance in text: 225: A51A

PubMed Link: 36075891

Variant Present in the following documents:

• 41439_2022_208_MOESM4_ESM.xlsx, sheet 2

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Circular RNA circPOSTN promotes neovascularization by regulating miR-219a-2-3p/STC1 axis and stimulating the secretion of VEGFA in glioblastoma.

Cell Death Discovery

Long, Niya N; Xu, Xu X; Lin, Hongyi H; Lv, Ying Y; Zou, Shenghui S; Cao, Han H; Chen, Xueshu X; Zhao, Yan Y; Qi, Xiaolan X; Yang, Hua H; Liu, Jian J; Chu, Liangzhao L

Publication Date: 2022-08-04

Variant appearance in text: 225: a51a

PubMed Link: 35927233

Variant Present in the following documents:

• 41420_2022_1136_MOESM3_ESM.xlsx, sheet 1

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The Long Non-Coding RNA FAM222A-AS1 Negatively Modulates MiR-Let-7f to Promote Colorectal Cancer Progression.

Frontiers In Oncology

Song, Mengmeng M; Li, Ye Y; Chen, Zhewen Z; Zhang, Jie J; Yang, Liuqing L; Zhang, Fan F; Song, Chunhua C; Miao, Mingyong M; Chang, Wenjun W; Shi, Hanping H

Publication Date: 2022

Variant appearance in text: 225: a51a

PubMed Link: 35646686

Variant Present in the following documents:

• Table_12.xlsx, sheet 2

View BVdb publication page

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P4HA1 Regulates CD31 via COL6A1 in the Transition of Glioblastoma Stem-Like Cells to Tumor Endothelioid Cells.

Frontiers In Oncology

Han, Xiangming X; Wang, Qiyan Q; Fang, Sheng S; Wang, Jialin J; Liu, Fusheng F; Zhang, Junwen J; Jin, Guishan G

Publication Date: 2022

Variant appearance in text: 225: a51a

PubMed Link: 35494018

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

View BVdb publication page

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Characterization of Pyroptosis-Related Subtypes via RNA-Seq and ScRNA-Seq to Predict Chemo-Immunotherapy Response in Triple-Negative Breast Cancer.

Frontiers In Genetics

Li, Chenlu C; Pan, Jingjing J; Jiang, Yinyan Y; Wu, Yanzhi Y; Jin, Zhenlin Z; Chen, Xupeng X

Publication Date: 2022

Variant appearance in text: 225: 153C>T

PubMed Link: 35386285

Variant Present in the following documents:

• DataSheet3.xlsx, sheet 4

View BVdb publication page

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Complete mitogenomes of four Trichiurus species: A taxonomic review of the T.lepturus species complex.

Zookeys

Yi, Mu-Rong MR; Hsu, Kui-Ching KC; Gu, Sui S; He, Xiong-Bo XB; Luo, Zhi-Sen ZS; Lin, Hung-Du HD; Yan, Yun-Rong YR

Publication Date: 2022

Variant appearance in text: 225: A51A

PubMed Link: 35173516

Variant Present in the following documents:

• Main text

View BVdb publication page

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: A51A

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 6
• pone.0251286.s005.xlsx, sheet 8

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: A51A

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 8
• pone.0251286.s005.xlsx, sheet 6

View BVdb publication page

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Ethnicity Differences in the Association of UCP1-3826A/G, UCP2-866G/A and Ala55Val, and UCP3-55C/T Polymorphisms with Type 2 Diabetes Mellitus Susceptibility: An Updated Meta-Analysis.

Biomed Research International

Huang, Rong R; Cai, Tingting T; Zhou, Yunting Y; Wang, Yuming Y; Wang, Huiying H; Shen, Ziyang Z; Xia, Wenqing W; Liu, Xiaomei X; Ding, Bo B; Luo, Yong Y; Yan, Rengna R; Li, Huiqin H; Wu, Jindan J; Ma, Jianhua J

Publication Date: 2021

Variant appearance in text: 225: A51A

PubMed Link: 34712730

Variant Present in the following documents:

• Main text

View BVdb publication page

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Development and validation of the CHIME simulation model to assess lifetime health outcomes of prediabetes and type 2 diabetes in Chinese populations: A modeling study.

Plos Medicine

Quan, Jianchao J; Ng, Carmen S CS; Kwok, Harley H Y HHY; Zhang, Ada A; Yuen, Yuet H YH; Choi, Cheung-Hei CH; Siu, Shing-Chung SC; Tang, Simon Y SY; Wat, Nelson M NM; Woo, Jean J; Eggleston, Karen K; Leung, Gabriel M GM

Publication Date: 2021-06

Variant appearance in text: 225: A51A

PubMed Link: 34166382

Variant Present in the following documents:

• Main text

View BVdb publication page

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CXCL10 potentiates immune checkpoint blockade therapy in homologous recombination-deficient tumors.

Theranostics

Shi, Zhiwen Z; Shen, Jianfeng J; Qiu, Junjun J; Zhao, Qingguo Q; Hua, Keqin K; Wang, Hongyan H

Publication Date: 2021

Variant appearance in text: 225: a51a

PubMed Link: 34158843

Variant Present in the following documents:

• thnov11p7175s1.xlsx, sheet 1

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Integrated molecular drivers coordinate biological and clinical states in melanoma.

Nature Genetics

Conway, Jake R JR; Dietlein, Felix F; Taylor-Weiner, Amaro A; AlDubayan, Saud S; Vokes, Natalie N; Keenan, Tanya T; Reardon, Brendan B; He, Meng Xiao MX; Margolis, Claire A CA; Weirather, Jason L JL; Haq, Rizwan R; Schilling, Bastian B; Stephen Hodi, F F; Schadendorf, Dirk D; Liu, David D; Van Allen, Eliezer M EM

Publication Date: 2020-12

Variant appearance in text: 225: 153C>T

PubMed Link: 33230298

Variant Present in the following documents:

• NIHMS1637640-supplement-SuppData1.xlsx, sheet 1

View BVdb publication page

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North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study.

Frontiers In Plant Science

Banoo, Aqleema A; Nabi, Asha A; Rasool, Rovidha S RS; Mahiya-Farooq, ; Shah, Mehraj D MD; Ahmad, Mushtaq M; Sofi, Parvaze A PA; Aasiya-Nabi, ; Itoo, Hamidullah H; Sharma, P N PN; Padder, Bilal A BA

Publication Date: 2020

Variant appearance in text: 225: Ala51Ala

PubMed Link: 33123180

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

View BVdb publication page

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K-Ras-Activated Cells Can Develop into Lung Tumors When Runx3-Mediated Tumor Suppressor Pathways Are Abrogated.

Molecules And Cells

Lee, You-Soub YS; Lee, Ja-Yeol JY; Song, Soo-Hyun SH; Kim, Da-Mi DM; Lee, Jung-Won JW; Chi, Xin-Zi XZ; Ito, Yoshiaki Y; Bae, Suk-Chul SC

Publication Date: 2020-10-31

Variant appearance in text: 225: Ala51Ala

PubMed Link: 33115981

Variant Present in the following documents:

• molce-43-889_Supple.xlsx, sheet 1

View BVdb publication page

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Molecular subtyping of glioblastoma based on immune-related genes for prognosis.

Scientific Reports

Chen, Xueran X; Fan, Xiaoqing X; Zhao, Chenggang C; Zhao, Zhiyang Z; Hu, Lizhu L; Wang, Delong D; Wang, Ruiting R; Fang, Zhiyou Z

Publication Date: 2020-09-23

Variant appearance in text: 225: a51a

PubMed Link: 32968155

Variant Present in the following documents:

• 41598_2020_72488_MOESM2_ESM.xls, sheet 11

View BVdb publication page

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Phylogeny and systematics of the Proterodiplostomidae Dubois, 1936 (Digenea: Diplostomoidea) reflect the complex evolutionary history of the ancient digenean group.

Systematic Parasitology

Tkach, Vasyl V VV; Achatz, Tyler J TJ; Pulis, Eric E EE; Junker, Kerstin K; Snyder, Scott D SD; Bell, Jeffrey A JA; Halajian, Ali A; de Vasconcelos Melo, Francisco Tiago FT

Publication Date: 2020-10

Variant appearance in text: 225: A51A

PubMed Link: 32813221

Variant Present in the following documents:

• Main text

View BVdb publication page

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Unidirectional rotating molecular motors dynamically interact with adsorbed proteins to direct the fate of mesenchymal stem cells.

Science Advances

Zhou, Qihui Q; Chen, Jiawen J; Luan, Yafei Y; Vainikka, Petteri A PA; Thallmair, Sebastian S; Marrink, Siewert J SJ; Feringa, Ben L BL; van Rijn, Patrick P

Publication Date: 2020-01

Variant appearance in text: 225: A51A

PubMed Link: 32064345

Variant Present in the following documents:

• Main text

View BVdb publication page

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Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq.

Frontiers In Plant Science

Li, Wenli W; Riday, Heathcliffe H; Riehle, Christina C; Edwards, Andrea A; Dinkins, Randy R

Publication Date: 2019

Variant appearance in text: 225: 153C>T

PubMed Link: 31708937

Variant Present in the following documents:

• DataSheet_2.xlsx, sheet 1

View BVdb publication page

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2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records.

Journal Of The American Medical Informatics Association : Jamia

Henry, Sam S; Buchan, Kevin K; Filannino, Michele M; Stubbs, Amber A; Uzuner, Ozlem O

Publication Date: 2020-01-01

Variant appearance in text: 225: A51A

PubMed Link: 31584655

Variant Present in the following documents:

• Main text

View BVdb publication page

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Targeting DDR2 enhances tumor response to anti-PD-1 immunotherapy.

Science Advances

Tu, Megan M MM; Lee, Francis Y F FYF; Jones, Robert T RT; Kimball, Abigail K AK; Saravia, Elizabeth E; Graziano, Robert F RF; Coleman, Brianne B; Menard, Krista K; Yan, Jun J; Michaud, Erin E; Chang, Han H; Abdel-Hafiz, Hany A HA; Rozhok, Andrii I AI; Duex, Jason E JE; Agarwal, Neeraj N; Chauca-Diaz, Ana A; Johnson, Linda K LK; Ng, Terry L TL; Cambier, John C JC; Clambey, Eric T ET; Costello, James C JC; Korman, Alan J AJ; Theodorescu, Dan D

Publication Date: 2019-02

Variant appearance in text: 225: 153C>T

PubMed Link: 30801016

Variant Present in the following documents:

• aav2437_Table_S1.xlsx, sheet 1

View BVdb publication page

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Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: 225: Ala51Ala

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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The genomic landscape of cutaneous SCC reveals drivers and a novel azathioprine associated mutational signature.

Nature Communications

Inman, Gareth J GJ; Wang, Jun J; Nagano, Ai A; Alexandrov, Ludmil B LB; Purdie, Karin J KJ; Taylor, Richard G RG; Sherwood, Victoria V; Thomson, Jason J; Hogan, Sarah S; Spender, Lindsay C LC; South, Andrew P AP; Stratton, Michael M; Chelala, Claude C; Harwood, Catherine A CA; Proby, Charlotte M CM; Leigh, Irene M IM

Publication Date: 2018-09-10

Variant appearance in text: 225: 153C>T

PubMed Link: 30202019

Variant Present in the following documents:

• 41467_2018_6027_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

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Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

Cuypers, Bart B; Berg, Maya M; Imamura, Hideo H; Dumetz, Franck F; De Muylder, Géraldine G; Domagalska, Malgorzata A MA; Rijal, Suman S; Bhattarai, Narayan Raj NR; Maes, Ilse I; Sanders, Mandy M; Cotton, James A JA; Meysman, Pieter P; Laukens, Kris K; Dujardin, Jean-Claude JC

Publication Date: 2018-08

Variant appearance in text: 225: Ala51Ala

PubMed Link: 29679745

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 153C>T

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression.

Nature Communications

Niknafs, Yashar S YS; Han, Sumin S; Ma, Teng T; Speers, Corey C; Zhang, Chao C; Wilder-Romans, Kari K; Iyer, Matthew K MK; Pitchiaya, Sethuramasundaram S; Malik, Rohit R; Hosono, Yasuyuki Y; Prensner, John R JR; Poliakov, Anton A; Singhal, Udit U; Xiao, Lanbo L; Kregel, Steven S; Siebenaler, Ronald F RF; Zhao, Shuang G SG; Uhl, Michael M; Gawronski, Alexander A; Hayes, Daniel F DF; Pierce, Lori J LJ; Cao, Xuhong X; Collins, Colin C; Backofen, Rolf R; Sahinalp, Cenk S CS; Rae, James M JM; Chinnaiyan, Arul M AM; Feng, Felix Y FY

Publication Date: 2016-09-26

Variant appearance in text: 225: a51a

PubMed Link: 27666543

Variant Present in the following documents:

• ncomms12791-s2.xlsx, sheet 1

View BVdb publication page

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Recurrent inactivating RASA2 mutations in melanoma.

Nature Genetics

Arafeh, Rand R; Qutob, Nouar N; Emmanuel, Rafi R; Keren-Paz, Alona A; Madore, Jason J; Elkahloun, Abdel A; Wilmott, James S JS; Gartner, Jared J JJ; Di Pizio, Antonella A; Winograd-Katz, Sabina S; Sindiri, Sivasish S; Rotkopf, Ron R; Dutton-Regester, Ken K; Johansson, Peter P; Pritchard, Antonia L AL; Waddell, Nicola N; Hill, Victoria K VK; Lin, Jimmy C JC; Hevroni, Yael Y; Rosenberg, Steven A SA; Khan, Javed J; Ben-Dor, Shifra S; Niv, Masha Y MY; Ulitsky, Igor I; Mann, Graham J GJ; Scolyer, Richard A RA; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2015-12

Variant appearance in text: 225: A51A

PubMed Link: 26502337

Variant Present in the following documents:

• NIHMS65345-supplement-Supplementary_table_3.xlsx, sheet 1

View BVdb publication page

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