Publications:

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In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer.

Nature Communications

Dervovic, Dzana D; Malik, Ahmad A AA; Chen, Edward L Y ELY; Narimatsu, Masahiro M; Adler, Nina N; Afiuni-Zadeh, Somaieh S; Krenbek, Dagmar D; Martinez, Sebastien S; Tsai, Ricky R; Boucher, Jonathan J; Berman, Jacob M JM; Teng, Katie K; Ayyaz, Arshad A; Lü, YiQing Y; Mbamalu, Geraldine G; Loganathan, Sampath K SK; Lee, Jongbok J; Zhang, Li L; Guidos, Cynthia C; Wrana, Jeffrey J; Valipour, Arschang A; Roux, Philippe P PP; Reimand, Jüri J; Jackson, Hartland W HW; Schramek, Daniel D

Publication Date: 2023-05-31

Variant appearance in text: 225: A52D

PubMed Link: 37258521

Variant Present in the following documents:

• 41467_2023_38841_MOESM8_ESM.xlsx, sheet 1

View BVdb publication page

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A52D

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: 225: a52d

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A52D

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

View BVdb publication page

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Sex-specific associations of adiposity with cardiometabolic traits in the UK: A multi-life stage cohort study with repeat metabolomics.

Plos Medicine

O'Keeffe, Linda M LM; Bell, Joshua A JA; O'Neill, Kate N KN; Lee, Matthew A MA; Woodward, Mark M; Peters, Sanne A E SAE; Smith, George Davey GD; Kearney, Patricia M PM

Publication Date: 2022-01

Variant appearance in text: 225: A52D

PubMed Link: 34990449

Variant Present in the following documents:

• Main text

View BVdb publication page

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Allele-specific genomic data elucidate the role of somatic gain and copy-number neutral loss of heterozygosity in cancer.

Cell Systems

Ciani, Yari Y; Fedrizzi, Tarcisio T; Prandi, Davide D; Lorenzin, Francesca F; Locallo, Alessio A; Gasperini, Paola P; Franceschini, Gian Marco GM; Benelli, Matteo M; Elemento, Olivier O; Fava, Luca L LL; Inga, Alberto A; Demichelis, Francesca F

Publication Date: 2022-02-16

Variant appearance in text: 225: A52D

PubMed Link: 34731645

Variant Present in the following documents:

• mmc2.xlsx, sheet 1

View BVdb publication page

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A52D

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

View BVdb publication page

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Fast mutual exclusivity algorithm nominates potential synthetic lethal gene pairs through brute force matrix product computations.

Computational And Structural Biotechnology Journal

Fedrizzi, Tarcisio T; Ciani, Yari Y; Lorenzin, Francesca F; Cantore, Thomas T; Gasperini, Paola P; Demichelis, Francesca F

Publication Date: 2021

Variant appearance in text: 225: A52D

PubMed Link: 34429855

Variant Present in the following documents:

• mmc2.xlsx, sheet 2

View BVdb publication page

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A computational and structural analysis of germline and somatic variants affecting the DDR mechanism, and their impact on human diseases.

Scientific Reports

Magraner-Pardo, Lorena L; Laskowski, Roman A RA; Pons, Tirso T; Thornton, Janet M JM

Publication Date: 2021-07-12

Variant appearance in text: 225: A52D

PubMed Link: 34253785

Variant Present in the following documents:

• 41598_2021_93715_MOESM3_ESM.xlsx, sheet 6
• 41598_2021_93715_MOESM3_ESM.xlsx, sheet 5

View BVdb publication page

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The evolving proteome of SARS-CoV-2 predominantly uses mutation combination strategy for survival.

Computational And Structural Biotechnology Journal

Patro, L Ponoop Prasad LPP; Sathyaseelan, Chakkarai C; Uttamrao, Patil Pranita PP; Rathinavelan, Thenmalarchelvi T

Publication Date: 2021

Variant appearance in text: 225: A52D

PubMed Link: 34109017

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

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MicroRNA panel in serum reveals novel diagnostic biomarkers for prostate cancer.

Peerj

Zhang, Shiyu S; Liu, Cheng C; Zou, Xuan X; Geng, Xiangnan X; Zhou, Xin X; Fan, XingChen X; Zhu, Danxia D; Zhang, Huo H; Zhu, Wei W

Publication Date: 2021

Variant appearance in text: 225: A52D

PubMed Link: 34055487

Variant Present in the following documents:

• peerj-09-11441-s009.xlsx, sheet 2

View BVdb publication page

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Suspect Screening, Prioritization, and Confirmation of Environmental Chemicals in Maternal-Newborn Pairs from San Francisco.

Environmental Science & Technology

Wang, Aolin A; Abrahamsson, Dimitri Panagopoulos DP; Jiang, Ting T; Wang, Miaomiao M; Morello-Frosch, Rachel R; Park, June-Soo JS; Sirota, Marina M; Woodruff, Tracey J TJ

Publication Date: 2021-04-20

Variant appearance in text: 225: A52D

PubMed Link: 33726493

Variant Present in the following documents:

• Main text

View BVdb publication page

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A52D

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

View BVdb publication page

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ProTECT-Prediction of T-Cell Epitopes for Cancer Therapy.

Frontiers In Immunology

Rao, Arjun A AA; Madejska, Ada A AA; Pfeil, Jacob J; Paten, Benedict B; Salama, Sofie R SR; Haussler, David D

Publication Date: 2020

Variant appearance in text: 225: A52D

PubMed Link: 33244314

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

View BVdb publication page

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Single-cell analysis of AIMP2 splice variants informs on drug sensitivity and prognosis in hematologic cancer.

Communications Biology

Ku, Jayoung J; Kim, Ryul R; Kim, Dongchan D; Kim, Daeyoon D; Song, Seulki S; Lee, Keonyong K; Lee, Namseok N; Kim, MinA M; Yoon, Sung-Soo SS; Kwon, Nam Hoon NH; Kim, Sunghoon S; Kim, Yoosik Y; Koh, Youngil Y

Publication Date: 2020-10-30

Variant appearance in text: 225: a52d

PubMed Link: 33128014

Variant Present in the following documents:

• 42003_2020_1353_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

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Genomic analysis of a riboflavin-overproducing Ashbya gossypii mutant isolated by disparity mutagenesis.

Bmc Genomics

Kato, Tatsuya T; Azegami, Junya J; Yokomori, Ami A; Dohra, Hideo H; El Enshasy, Hesham A HA; Park, Enoch Y EY

Publication Date: 2020-04-23

Variant appearance in text: 225: 155C>A

PubMed Link: 32326906

Variant Present in the following documents:

• 12864_2020_Article_6709.pdf

View BVdb publication page

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Two dimensional diffusion-controlled triplet-triplet annihilation kinetics.

Chemical Science

Gschwend, Grégoire C GC; Kazmierczak, Morgan M; Olaya, Astrid J AJ; Brevet, Pierre-François PF; Girault, Hubert H HH

Publication Date: 2019-08-28

Variant appearance in text: 225: A52D

PubMed Link: 31588315

Variant Present in the following documents:

• Main text

View BVdb publication page

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Synthetic modeling reveals HOXB genes are critical for the initiation and maintenance of human leukemia.

Nature Communications

Kusakabe, Manabu M; Sun, Ann Chong AC; Tyshchenko, Kateryna K; Wong, Rachel R; Nanda, Aastha A; Shanna, Claire C; Gusscott, Samuel S; Chavez, Elizabeth A EA; Lorzadeh, Alireza A; Zhu, Alice A; Hill, Ainsleigh A; Hung, Stacy S; Brown, Scott S; Babaian, Artem A; Wang, Xuehai X; Holt, Robert A RA; Steidl, Christian C; Karsan, Aly A; Humphries, R Keith RK; Eaves, Connie J CJ; Hirst, Martin M; Weng, Andrew P AP

Publication Date: 2019-07-02

Variant appearance in text: 225: 155C>A

PubMed Link: 31266935

Variant Present in the following documents:

• 41467_2019_10510_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Targeting DDR2 enhances tumor response to anti-PD-1 immunotherapy.

Science Advances

Tu, Megan M MM; Lee, Francis Y F FYF; Jones, Robert T RT; Kimball, Abigail K AK; Saravia, Elizabeth E; Graziano, Robert F RF; Coleman, Brianne B; Menard, Krista K; Yan, Jun J; Michaud, Erin E; Chang, Han H; Abdel-Hafiz, Hany A HA; Rozhok, Andrii I AI; Duex, Jason E JE; Agarwal, Neeraj N; Chauca-Diaz, Ana A; Johnson, Linda K LK; Ng, Terry L TL; Cambier, John C JC; Clambey, Eric T ET; Costello, James C JC; Korman, Alan J AJ; Theodorescu, Dan D

Publication Date: 2019-02

Variant appearance in text: 225: 155C>A

PubMed Link: 30801016

Variant Present in the following documents:

• aav2437_Table_S1.xlsx, sheet 1

View BVdb publication page

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Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A52D

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

View BVdb publication page

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Pan-urologic cancer genomic subtypes that transcend tissue of origin.

Nature Communications

Chen, Fengju F; Zhang, Yiqun Y; Bossé, Dominick D; Lalani, Aly-Khan A AA; Hakimi, A Ari AA; Hsieh, James J JJ; Choueiri, Toni K TK; Gibbons, Don L DL; Ittmann, Michael M; Creighton, Chad J CJ

Publication Date: 2017-08-04

Variant appearance in text: 225: A52D

PubMed Link: 28775315

Variant Present in the following documents:

• 41467_2017_289_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 155C>A

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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