Publications:

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A54H

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3

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Persistent mutation burden drives sustained anti-tumor immune responses.

Nature Medicine

Niknafs, Noushin N; Balan, Archana A; Cherry, Christopher C; Hummelink, Karlijn K; Monkhorst, Kim K; Shao, Xiaoshan M XM; Belcaid, Zineb Z; Marrone, Kristen A KA; Murray, Joseph J; Smith, Kellie N KN; Levy, Benjamin B; Feliciano, Josephine J; Hann, Christine L CL; Lam, Vincent V; Pardoll, Drew M DM; Karchin, Rachel R; Seiwert, Tanguy Y TY; Brahmer, Julie R JR; Forde, Patrick M PM; Velculescu, Victor E VE; Anagnostou, Valsamo V

Publication Date: 2023-01-26

Variant appearance in text: 225: A54H

PubMed Link: 36702947

Variant Present in the following documents:

• 41591_2022_2163_MOESM3_ESM.xlsx, sheet 3
• 41591_2022_2163_MOESM3_ESM.xlsx, sheet 4

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Comprehensive analyses of PDHA1 that serves as a predictive biomarker for immunotherapy response in cancer.

Frontiers In Pharmacology

Deng, Langmei L; Jiang, Anqi A; Zeng, Hanqing H; Peng, Xiaoji X; Song, Liying L

Publication Date: 2022

Variant appearance in text: 225: A54H

PubMed Link: 36003495

Variant Present in the following documents:

• table4.xlsx, sheet 1

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A platform for oncogenomic reporting and interpretation.

Nature Communications

Reisle, Caralyn C; Williamson, Laura M LM; Pleasance, Erin E; Davies, Anna A; Pellegrini, Brayden B; Bleile, Dustin W DW; Mungall, Karen L KL; Chuah, Eric E; Jones, Martin R MR; Ma, Yussanne Y; Lewis, Eleanor E; Beckie, Isaac I; Pham, David D; Matiello Pletz, Raphael R; Muhammadzadeh, Amir A; Pierce, Brandon M BM; Li, Jacky J; Stevenson, Ross R; Wong, Hansen H; Bailey, Lance L; Reisle, Abbey A; Douglas, Matthew M; Bonakdar, Melika M; Nelson, Jessica M T JMT; Grisdale, Cameron J CJ; Krzywinski, Martin M; Fisic, Ana A; Mitchell, Teresa T; Renouf, Daniel J DJ; Yip, Stephen S; Laskin, Janessa J; Marra, Marco A MA; Jones, Steven J M SJM

Publication Date: 2022-02-09

Variant appearance in text: 225: A54H

PubMed Link: 35140225

Variant Present in the following documents:

• 41467_2022_28348_MOESM4_ESM.xlsx, sheet 9

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A54H

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications.

Elife

Franch-Expósito, Sebastià S; Bassaganyas, Laia L; Vila-Casadesús, Maria M; Hernández-Illán, Eva E; Esteban-Fabró, Roger R; Díaz-Gay, Marcos M; Lozano, Juan José JJ; Castells, Antoni A; Llovet, Josep Maria JM; Castellví-Bel, Sergi S; Camps, Jordi J

Publication Date: 2020-01-15

Variant appearance in text: 225: A54H

PubMed Link: 31939734

Variant Present in the following documents:

• elife-50267-fig1-figsupp1-data1.xlsx, sheet 1

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Landscape of B cell immunity and related immune evasion in human cancers.

Nature Genetics

Hu, Xihao X; Zhang, Jian J; Wang, Jin J; Fu, Jingxin J; Li, Taiwen T; Zheng, Xiaoqi X; Wang, Binbin B; Gu, Shengqing S; Jiang, Peng P; Fan, Jingyu J; Ying, Xiaomin X; Zhang, Jing J; Carroll, Michael C MC; Wucherpfennig, Kai W KW; Hacohen, Nir N; Zhang, Fan F; Zhang, Peng P; Liu, Jun S JS; Li, Bo B; Liu, X Shirley XS

Publication Date: 2019-03

Variant appearance in text: 225: A54H

PubMed Link: 30742113

Variant Present in the following documents:

• NIHMS1516974-supplement-3.xlsx, sheet 1

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The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma.

Cell Reports

Ricketts, Christopher J CJ; De Cubas, Aguirre A AA; Fan, Huihui H; Smith, Christof C CC; Lang, Martin M; Reznik, Ed E; Bowlby, Reanne R; Gibb, Ewan A EA; Akbani, Rehan R; Beroukhim, Rameen R; Bottaro, Donald P DP; Choueiri, Toni K TK; Gibbs, Richard A RA; Godwin, Andrew K AK; Haake, Scott S; Hakimi, A Ari AA; Henske, Elizabeth P EP; Hsieh, James J JJ; Ho, Thai H TH; Kanchi, Rupa S RS; Krishnan, Bhavani B; Kwiatkowski, David J DJ; Lui, Wembin W; Merino, Maria J MJ; Mills, Gordon B GB; Myers, Jerome J; Nickerson, Michael L ML; Reuter, Victor E VE; Schmidt, Laura S LS; Shelley, C Simon CS; Shen, Hui H; Shuch, Brian B; Signoretti, Sabina S; Srinivasan, Ramaprasad R; Tamboli, Pheroze P; Thomas, George G; Vincent, Benjamin G BG; Vocke, Cathy D CD; Wheeler, David A DA; Yang, Lixing L; Kim, William Y WY; Robertson, A Gordon AG; , ; Spellman, Paul T PT; Rathmell, W Kimryn WK; Linehan, W Marston WM

Publication Date: 2018-04-03

Variant appearance in text: 225: A54H

PubMed Link: 29617669

Variant Present in the following documents:

• NIHMS958988-supplement-2.xlsx, sheet 1

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Distinct chromatin signatures of DNA hypomethylation in aging and cancer.

Aging Cell

Pérez, Raúl F RF; Tejedor, Juan Ramón JR; Bayón, Gustavo F GF; Fernández, Agustín F AF; Fraga, Mario F MF

Publication Date: 2018-06

Variant appearance in text: 225: A54H

PubMed Link: 29504244

Variant Present in the following documents:

• ACEL-17-e12744-s002.xls, sheet 2

View BVdb publication page

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