Publications:

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In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer.

Nature Communications

Dervovic, Dzana D; Malik, Ahmad A AA; Chen, Edward L Y ELY; Narimatsu, Masahiro M; Adler, Nina N; Afiuni-Zadeh, Somaieh S; Krenbek, Dagmar D; Martinez, Sebastien S; Tsai, Ricky R; Boucher, Jonathan J; Berman, Jacob M JM; Teng, Katie K; Ayyaz, Arshad A; Lü, YiQing Y; Mbamalu, Geraldine G; Loganathan, Sampath K SK; Lee, Jongbok J; Zhang, Li L; Guidos, Cynthia C; Wrana, Jeffrey J; Valipour, Arschang A; Roux, Philippe P PP; Reimand, Jüri J; Jackson, Hartland W HW; Schramek, Daniel D

Publication Date: 2023-05-31

Variant appearance in text: 225: A54R

PubMed Link: 37258521

Variant Present in the following documents:

• 41467_2023_38841_MOESM8_ESM.xlsx, sheet 1

View BVdb publication page

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A54R

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Persistent mutation burden drives sustained anti-tumor immune responses.

Nature Medicine

Niknafs, Noushin N; Balan, Archana A; Cherry, Christopher C; Hummelink, Karlijn K; Monkhorst, Kim K; Shao, Xiaoshan M XM; Belcaid, Zineb Z; Marrone, Kristen A KA; Murray, Joseph J; Smith, Kellie N KN; Levy, Benjamin B; Feliciano, Josephine J; Hann, Christine L CL; Lam, Vincent V; Pardoll, Drew M DM; Karchin, Rachel R; Seiwert, Tanguy Y TY; Brahmer, Julie R JR; Forde, Patrick M PM; Velculescu, Victor E VE; Anagnostou, Valsamo V

Publication Date: 2023-01-26

Variant appearance in text: 225: A54R

PubMed Link: 36702947

Variant Present in the following documents:

• 41591_2022_2163_MOESM3_ESM.xlsx, sheet 4

View BVdb publication page

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Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A54R

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

View BVdb publication page

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Frequent somatic gene conversion as a mechanism for loss of heterozygosity in tumor suppressor genes.

Genome Research

Takahashi, Kazuki K KK; Innan, Hideki H

Publication Date: 2022-06

Variant appearance in text: 225: A54R

PubMed Link: 35618418

Variant Present in the following documents:

• supp_gr.276617.122_Supplemental_Tables.xlsx, sheet 1

View BVdb publication page

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A54R

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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TP53 isoform junction reads based analysis in malignant and normal contexts.

Scientific Reports

Vural, Suleyman S; Chang, Lun-Ching LC; Yee, Laura M LM; Sonkin, Dmitriy D

Publication Date: 2021-08-26

Variant appearance in text: 225: A54R

PubMed Link: 34446762

Variant Present in the following documents:

• 41598_2021_96700_MOESM1_ESM.xlsx, sheet 2

View BVdb publication page

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A computational and structural analysis of germline and somatic variants affecting the DDR mechanism, and their impact on human diseases.

Scientific Reports

Magraner-Pardo, Lorena L; Laskowski, Roman A RA; Pons, Tirso T; Thornton, Janet M JM

Publication Date: 2021-07-12

Variant appearance in text: 225: A54R

PubMed Link: 34253785

Variant Present in the following documents:

• 41598_2021_93715_MOESM3_ESM.xlsx, sheet 4
• 41598_2021_93715_MOESM3_ESM.xlsx, sheet 6
• 41598_2021_93715_MOESM3_ESM.xlsx, sheet 2
• 41598_2021_93715_MOESM3_ESM.xlsx, sheet 5

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Activation of the DDR Pathway Leads to the Down-Regulation of the TGFβ Pathway and a Better Response to ICIs in Patients With Metastatic Urothelial Carcinoma.

Frontiers In Immunology

Zhou, Chaozheng C; Lin, Anqi A; Cao, Manming M; Ding, Weimin W; Mou, Weiming W; Guo, Ningyi N; Chen, Zhenyu Z; Zhang, Jian J; Luo, Peng P

Publication Date: 2021

Variant appearance in text: 225: A54R

PubMed Link: 34220801

Variant Present in the following documents:

• DataSheet_1.xlsx, sheet 5

View BVdb publication page

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Targeting natural splicing plasticity of APOBEC3B restricts its expression and mutagenic activity.

Communications Biology

Rouf Banday, A A; Onabajo, Olusegun O OO; Lin, Seraph Han-Yin SH; Obajemu, Adeola A; Vargas, Joselin M JM; Delviks-Frankenberry, Krista A KA; Lamy, Philippe P; Bayanjargal, Ariunaa A; Zettelmeyer, Clara C; Florez-Vargas, Oscar O; Pathak, Vinay K VK; Dyrskjøt, Lars L; Prokunina-Olsson, Ludmila L

Publication Date: 2021-03-22

Variant appearance in text: 225: A54R

PubMed Link: 33753867

Variant Present in the following documents:

• 42003_2021_1844_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

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A TP53-Associated Immune Prognostic Signature for the Prediction of Overall Survival and Therapeutic Responses in Muscle-Invasive Bladder Cancer.

Frontiers In Immunology

Wu, Xiangkun X; Lv, Daojun D; Cai, Chao C; Zhao, Zhijian Z; Wang, Ming M; Chen, Wenzhe W; Liu, Yongda Y

Publication Date: 2020

Variant appearance in text: 225: A54R

PubMed Link: 33391264

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

View BVdb publication page

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A54R

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

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A Clinical Genomics-Guided Prioritizing Strategy Enables Selecting Proper Cancer Cell Lines for Biomedical Research.

Iscience

Shao, Xin X; Wang, Yi Y; Lu, Xiaoyan X; Hu, Yang Y; Liao, Jie J; Li, Junying J; Chen, Xuechun X; Yu, Yunru Y; Ai, Ni N; Ying, Meidan M; Fan, Xiaohui X

Publication Date: 2020-11-20

Variant appearance in text: 225: A54R

PubMed Link: 33225250

Variant Present in the following documents:

• mmc3.xlsx, sheet 2

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Pan-cancer analysis of somatic mutations in miRNA genes.

Ebiomedicine

Urbanek-Trzeciak, Martyna O MO; Galka-Marciniak, Paulina P; Nawrocka, Paulina M PM; Kowal, Ewelina E; Szwec, Sylwia S; Giefing, Maciej M; Kozlowski, Piotr P

Publication Date: 2020-11

Variant appearance in text: 225: A54R

PubMed Link: 33038763

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

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APOBEC3A is a prominent cytidine deaminase in breast cancer.

Plos Genetics

Cortez, Luis M LM; Brown, Amber L AL; Dennis, Madeline A MA; Collins, Christopher D CD; Brown, Alexander J AJ; Mitchell, Debra D; Mertz, Tony M TM; Roberts, Steven A SA

Publication Date: 2019-12

Variant appearance in text: 225: A54R

PubMed Link: 31841499

Variant Present in the following documents:

• pgen.1008545.s016.xlsx, sheet 8

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Pan-urologic cancer genomic subtypes that transcend tissue of origin.

Nature Communications

Chen, Fengju F; Zhang, Yiqun Y; Bossé, Dominick D; Lalani, Aly-Khan A AA; Hakimi, A Ari AA; Hsieh, James J JJ; Choueiri, Toni K TK; Gibbons, Don L DL; Ittmann, Michael M; Creighton, Chad J CJ

Publication Date: 2017-08-04

Variant appearance in text: 225: A54R

PubMed Link: 28775315

Variant Present in the following documents:

• 41467_2017_289_MOESM3_ESM.xlsx, sheet 1

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Analysis of the monkeypox virus genome.

Virology

Shchelkunov, S N SN; Totmenin, A V AV; Safronov, P F PF; Mikheev, M V MV; Gutorov, V V VV; Ryazankina, O I OI; Petrov, N A NA; Babkin, I V IV; Uvarova, E A EA; Sandakhchiev, L S LS; Sisler, J R JR; Esposito, J J JJ; Damon, I K IK; Jahrling, P B PB; Moss, B B

Publication Date: 2002-06-05

Variant appearance in text: 225: A54R

PubMed Link: 12083817

Variant Present in the following documents:

• main.pdf

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