Publications:

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Persistent mutation burden drives sustained anti-tumor immune responses.

Nature Medicine

Niknafs, Noushin N; Balan, Archana A; Cherry, Christopher C; Hummelink, Karlijn K; Monkhorst, Kim K; Shao, Xiaoshan M XM; Belcaid, Zineb Z; Marrone, Kristen A KA; Murray, Joseph J; Smith, Kellie N KN; Levy, Benjamin B; Feliciano, Josephine J; Hann, Christine L CL; Lam, Vincent V; Pardoll, Drew M DM; Karchin, Rachel R; Seiwert, Tanguy Y TY; Brahmer, Julie R JR; Forde, Patrick M PM; Velculescu, Victor E VE; Anagnostou, Valsamo V

Publication Date: 2023-01-26

Variant appearance in text: 225: A54X

PubMed Link: 36702947

Variant Present in the following documents:

• 41591_2022_2163_MOESM3_ESM.xlsx, sheet 3

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Increased expression of SYCP2 predicts poor prognosis in patients suffering from breast carcinoma.

Frontiers In Genetics

Zheng, Hongyan H; Guo, Xiaorong X; Li, Nan N; Qin, Luyao L; Li, Xiaoqing X; Lou, Ge G

Publication Date: 2022

Variant appearance in text: 225: A54X

PubMed Link: 36159998

Variant Present in the following documents:

• DataSheet7.xlsx, sheet 1

View BVdb publication page

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Pan-Cancer Analysis, Reveals COVID-19-Related BSG as a Novel Marker for Treatment and Identification of Multiple Human Cancers.

Frontiers In Cell And Developmental Biology

Huang, Tao T; He, Wei-Ying WY

Publication Date: 2022

Variant appearance in text: 225: A54X

PubMed Link: 35646943

Variant Present in the following documents:

• Table1.xlsx, sheet 5

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CDKN2A Deletion Leading to Hematogenous Metastasis of Human Gastric Carcinoma.

Frontiers In Oncology

Qiao, Juanli J; Tian, Yuan Y; Cheng, Xiaojing X; Liu, Zhaojun Z; Zhou, Jing J; Gu, Liankun L; Zhang, Baozhen B; Zhang, Lianhai L; Ji, Jiafu J; Xing, Rui R; Deng, Dajun D

Publication Date: 2021

Variant appearance in text: 225: A54X

PubMed Link: 35004325

Variant Present in the following documents:

• DataSheet_1.xlsx, sheet 2

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LncRNA Uc003xsl.1-Mediated Activation of the NFκB/IL8 Axis Promotes Progression of Triple-Negative Breast Cancer.

Cancer Research

Xu, Ying Y; Ren, Wei W; Li, Qingjian Q; Duan, Chaohui C; Lin, Xiaorong X; Bi, Zhuofei Z; You, Kaiyun K; Hu, Qian Q; Xie, Ning N; Yu, Yunfang Y; Xu, Xiaoding X; Hu, Hai H; Yao, Herui H

Publication Date: 2022-02-15

Variant appearance in text: 225: A54X

PubMed Link: 34965935

Variant Present in the following documents:

• can-21-1446_supplementary_tables-1_suppst1.xlsx, sheet 3

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Significance of CD8+ T cell infiltration-related biomarkers and the corresponding prediction model for the prognosis of kidney renal clear cell carcinoma.

Aging

Tian, Yuan Y; Wei, Yumei Y; Liu, Hongmei H; Shang, Heli H; Xu, Yuedong Y; Wu, Tong T; Liu, Wei W; Huang, Alan A; Dang, Qi Q; Sun, Yuping Y

Publication Date: 2021-10-04

Variant appearance in text: 225: A54X

PubMed Link: 34606472

Variant Present in the following documents:

• aging-13-203584-s003.xlsx, sheet 3
• aging-13-203584-s003.xlsx, sheet 1

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Synergistic apoptotic effect of miR-183-5p and Polo-Like kinase 1 inhibitor NMS-P937 in breast cancer cells.

Cell Death And Differentiation

Kudo, Masahisa M; Zalles, Nicole N; Distefano, Rosario R; Nigita, Giovanni G; Veneziano, Dario D; Gasparini, Pierluigi P; Croce, Carlo M CM

Publication Date: 2022-02

Variant appearance in text: 225: A54X

PubMed Link: 34561554

Variant Present in the following documents:

• 41418_2021_864_MOESM10_ESM.xlsx, sheet 14
• 41418_2021_864_MOESM10_ESM.xlsx, sheet 10

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A54X

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

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CXCL10 potentiates immune checkpoint blockade therapy in homologous recombination-deficient tumors.

Theranostics

Shi, Zhiwen Z; Shen, Jianfeng J; Qiu, Junjun J; Zhao, Qingguo Q; Hua, Keqin K; Wang, Hongyan H

Publication Date: 2021

Variant appearance in text: 225: A54X

PubMed Link: 34158843

Variant Present in the following documents:

• thnov11p7175s1.xlsx, sheet 1

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Chromosomal copy number heterogeneity predicts survival rates across cancers.

Nature Communications

van Dijk, Erik E; van den Bosch, Tom T; Lenos, Kristiaan J KJ; El Makrini, Khalid K; Nijman, Lisanne E LE; van Essen, Hendrik F B HFB; Lansu, Nico N; Boekhout, Michiel M; Hageman, Joris H JH; Fitzgerald, Rebecca C RC; Punt, Cornelis J A CJA; Tuynman, Jurriaan B JB; Snippert, Hugo J G HJG; Kops, Geert J P L GJPL; Medema, Jan Paul JP; Ylstra, Bauke B; Vermeulen, Louis L; Miedema, Daniël M DM

Publication Date: 2021-05-27

Variant appearance in text: 225: A54X

PubMed Link: 34045449

Variant Present in the following documents:

• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 65
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 61
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 66
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 60
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 58
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 62
• 41467_2021_23384_MOESM4_ESM.xlsx, sheet 1
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 63
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 64
• 41467_2021_23384_MOESM7_ESM.xlsx, sheet 59

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A54X

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

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Pan-cancer analysis of somatic mutations in miRNA genes.

Ebiomedicine

Urbanek-Trzeciak, Martyna O MO; Galka-Marciniak, Paulina P; Nawrocka, Paulina M PM; Kowal, Ewelina E; Szwec, Sylwia S; Giefing, Maciej M; Kozlowski, Piotr P

Publication Date: 2020-11

Variant appearance in text: 225: A54X

PubMed Link: 33038763

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

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Wide-ranging analysis of survival-related alternative splicing events in invasive breast carcinoma.

Oncology Letters

Jia, Keren K; Wu, Yingcheng Y; Huang, Jing J; Chen, Jianing J; Wei, Huagen H; Wu, Huiqun H

Publication Date: 2020-08

Variant appearance in text: 225: A54X

PubMed Link: 32724430

Variant Present in the following documents:

• Supplementary_Data.pdf

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Candidate methylation sites associated with endocrine therapy resistance in ER+/HER2- breast cancer.

Bmc Cancer

Soleimani Dodaran, Maryam M; Borgoni, Simone S; Sofyalı, Emre E; Verschure, Pernette J PJ; Wiemann, Stefan S; Moerland, Perry D PD; van Kampen, Antoine H C AHC

Publication Date: 2020-07-19

Variant appearance in text: 225: A54X

PubMed Link: 32684154

Variant Present in the following documents:

• 12885_2020_7100_MOESM3_ESM.xlsx, sheet 2

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APOBEC3A is a prominent cytidine deaminase in breast cancer.

Plos Genetics

Cortez, Luis M LM; Brown, Amber L AL; Dennis, Madeline A MA; Collins, Christopher D CD; Brown, Alexander J AJ; Mitchell, Debra D; Mertz, Tony M TM; Roberts, Steven A SA

Publication Date: 2019-12

Variant appearance in text: 225: A54X

PubMed Link: 31841499

Variant Present in the following documents:

• pgen.1008545.s016.xlsx, sheet 7

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Negative Regulation of BOK Expression by Recruitment of TRIM28 to Regulatory Elements in Its 3' Untranslated Region.

Iscience

Fernandez-Marrero, Yuniel Y; Bachmann, Daniel D; Lauber, Emanuel E; Kaufmann, Thomas T

Publication Date: 2018-11-30

Variant appearance in text: 225: A54X

PubMed Link: 30471638

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

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Comprehensive transcriptomic analysis of heat shock proteins in the molecular subtypes of human breast cancer.

Bmc Cancer

Zoppino, Felipe C M FCM; Guerrero-Gimenez, Martin E ME; Castro, Gisela N GN; Ciocca, Daniel R DR

Publication Date: 2018-06-28

Variant appearance in text: 225: A54X

PubMed Link: 29954368

Variant Present in the following documents:

• 12885_2018_4621_MOESM1_ESM.xlsx, sheet 1

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An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

Cell

Liu, Jianfang J; Lichtenberg, Tara T; Hoadley, Katherine A KA; Poisson, Laila M LM; Lazar, Alexander J AJ; Cherniack, Andrew D AD; Kovatich, Albert J AJ; Benz, Christopher C CC; Levine, Douglas A DA; Lee, Adrian V AV; Omberg, Larsson L; Wolf, Denise M DM; Shriver, Craig D CD; Thorsson, Vesteinn V; , ; Hu, Hai H

Publication Date: 2018-04-05

Variant appearance in text: 225: A54X

PubMed Link: 29625055

Variant Present in the following documents:

• NIHMS978596-supplement-1.xlsx, sheet 3
• NIHMS978596-supplement-1.xlsx, sheet 1

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SETD7 is a prognosis predicting factor of breast cancer and regulates redox homeostasis.

Oncotarget

Huang, Run R; Li, Xiaolin X; Yu, Yang Y; Ma, Lisi L; Liu, Sixuan S; Zong, Xiangyun X; Zheng, Qi Q

Publication Date: 2017-11-07

Variant appearance in text: 225: A54X

PubMed Link: 29212211

Variant Present in the following documents:

• oncotarget-08-94080-s002.xls, sheet 1

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Mutation Clusters from Cancer Exome.

Genes

Kakushadze, Zura Z; Yu, Willie W

Publication Date: 2017-08-15

Variant appearance in text: 225: A54X

PubMed Link: 28809811

Variant Present in the following documents:

• Main text
• genes-08-00201.pdf

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Transcriptome sequencing uncovers a three-long noncoding RNA signature in predicting breast cancer survival.

Scientific Reports

Guo, Wenna W; Wang, Qiang Q; Zhan, Yueping Y; Chen, Xijia X; Yu, Qi Q; Zhang, Jiawei J; Wang, Yi Y; Xu, Xin-Jian XJ; Zhu, Liucun L

Publication Date: 2016-06-24

Variant appearance in text: 225: A54X

PubMed Link: 27338266

Variant Present in the following documents:

• srep27931-s1.pdf

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Long non-coding RNAs as prognostic markers in human breast cancer.

Oncotarget

Liu, Hairong H; Li, Juan J; Koirala, Pratirodh P; Ding, Xianfeng X; Chen, Binghai B; Wang, Yiheng Y; Wang, Zheng Z; Wang, Chuanxin C; Zhang, Xu X; Mo, Yin-Yuan YY

Publication Date: 2016-04-12

Variant appearance in text: 225: A54X

PubMed Link: 26942882

Variant Present in the following documents:

• oncotarget-07-20584-s005.xlsx, sheet 1

View BVdb publication page

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