Publications:

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In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer.

Nature Communications

Dervovic, Dzana D; Malik, Ahmad A AA; Chen, Edward L Y ELY; Narimatsu, Masahiro M; Adler, Nina N; Afiuni-Zadeh, Somaieh S; Krenbek, Dagmar D; Martinez, Sebastien S; Tsai, Ricky R; Boucher, Jonathan J; Berman, Jacob M JM; Teng, Katie K; Ayyaz, Arshad A; Lü, YiQing Y; Mbamalu, Geraldine G; Loganathan, Sampath K SK; Lee, Jongbok J; Zhang, Li L; Guidos, Cynthia C; Wrana, Jeffrey J; Valipour, Arschang A; Roux, Philippe P PP; Reimand, Jüri J; Jackson, Hartland W HW; Schramek, Daniel D

Publication Date: 2023-05-31

Variant appearance in text: 225: A54A

PubMed Link: 37258521

Variant Present in the following documents:

• 41467_2023_38841_MOESM8_ESM.xlsx, sheet 1

View BVdb publication page

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Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific Reports

Zheng, Weisheng W; Pu, Mengchen M; Li, Xiaorong X; Du, Zhaolan Z; Jin, Sutong S; Li, Xingshuai X; Zhou, Jielong J; Zhang, Yingsheng Y

Publication Date: 2023-05-30

Variant appearance in text: 225: A54A

PubMed Link: 37253775

Variant Present in the following documents:

• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 3
• 41598_2023_35842_MOESM8_ESM.xlsx, sheet 1

View BVdb publication page

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Spatial analysis of genetic clusters and epidemiologic factors related to wild poliovirus type 1 persistence in Afghanistan and Pakistan.

Plos Global Public Health

Mendes, Amalia A; Whiteman, Ari A; Bullard, Kelley K; Sharif, Salmaan S; Khurshid, Adnan A; Alam, Muhammad Masroor MM; Salman, Muhammad M; Ford, Vanessa V; Blair, Taisha T; Burns, Cara C CC; Ehrhardt, Derek D; Jorba, Jaume J; Hsu, Christopher H CH

Publication Date: 2022

Variant appearance in text: 225: A54A

PubMed Link: 36962349

Variant Present in the following documents:

• pgph.0000251.s001.xlsx, sheet 1

View BVdb publication page

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Circular RNA circPOSTN promotes neovascularization by regulating miR-219a-2-3p/STC1 axis and stimulating the secretion of VEGFA in glioblastoma.

Cell Death Discovery

Long, Niya N; Xu, Xu X; Lin, Hongyi H; Lv, Ying Y; Zou, Shenghui S; Cao, Han H; Chen, Xueshu X; Zhao, Yan Y; Qi, Xiaolan X; Yang, Hua H; Liu, Jian J; Chu, Liangzhao L

Publication Date: 2022-08-04

Variant appearance in text: 225: A54A

PubMed Link: 35927233

Variant Present in the following documents:

• 41420_2022_1136_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

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Identification and Validation of Novel Immune-Related Alternative Splicing Signatures as a Prognostic Model for Colon Cancer.

Frontiers In Oncology

Liu, Yunze Y; Xu, Lei L; Hao, Chuanchuan C; Wu, Jin J; Jia, Xianhong X; Ding, Xia X; Lin, Changwei C; Zhu, Hongmei H; Zhang, Yi Y

Publication Date: 2022

Variant appearance in text: 225: a54a

PubMed Link: 35692800

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

View BVdb publication page

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P4HA1 Regulates CD31 via COL6A1 in the Transition of Glioblastoma Stem-Like Cells to Tumor Endothelioid Cells.

Frontiers In Oncology

Han, Xiangming X; Wang, Qiyan Q; Fang, Sheng S; Wang, Jialin J; Liu, Fusheng F; Zhang, Junwen J; Jin, Guishan G

Publication Date: 2022

Variant appearance in text: 225: A54A

PubMed Link: 35494018

Variant Present in the following documents:

• Table_1.xlsx, sheet 1

View BVdb publication page

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: A54A

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 6
• pone.0251286.s005.xlsx, sheet 8

View BVdb publication page

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KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: A54A

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 8
• pone.0251286.s005.xlsx, sheet 6

View BVdb publication page

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A chemoresistance lncRNA signature for recurrence risk stratification of colon cancer patients with chemotherapy.

Molecular Therapy. Nucleic Acids

Wang, Hao H; Gao, Yuzhen Y; Vafaei, Somayeh S; Yu, Qiaoyan Q; Zhang, Jun J; Wang, Liangjing L

Publication Date: 2022-03-08

Variant appearance in text: 225: A54A

PubMed Link: 35036055

Variant Present in the following documents:

• mmc1.pdf
• mmc2.pdf

View BVdb publication page

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Proteo-transcriptomics meta-analysis identifies SUMO2 as a promising target in glioblastoma multiforme therapeutics.

Cancer Cell International

Krishna, Aswani P AP; John, Sebastian S; Shinde, Puja Laxmanrao PL; Mishra, Rashmi R

Publication Date: 2021-10-29

Variant appearance in text: 225: A54A

PubMed Link: 34715855

Variant Present in the following documents:

• 12935_2021_2279_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Acquisition of aneuploidy drives mutant p53-associated gain-of-function phenotypes.

Nature Communications

Redman-Rivera, Lindsay N LN; Shaver, Timothy M TM; Jin, Hailing H; Marshall, Clayton B CB; Schafer, Johanna M JM; Sheng, Quanhu Q; Hongo, Rachel A RA; Beckermann, Kathryn E KE; Wheeler, Ferrin C FC; Lehmann, Brian D BD; Pietenpol, Jennifer A JA

Publication Date: 2021-08-31

Variant appearance in text: 225: A54A

PubMed Link: 34465782

Variant Present in the following documents:

• 41467_2021_25359_MOESM5_ESM.xlsx, sheet 30

View BVdb publication page

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Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer.

Cell & Bioscience

Kang, Yujuan Y; Wan, Lin L; Wang, Qin Q; Yin, Yanling Y; Liu, Jiena J; Liu, Lei L; Wu, Hao H; Zhang, Lei L; Zhang, Xin X; Xu, Shouping S; Pang, Da D

Publication Date: 2021-08-31

Variant appearance in text: 225: A54A

PubMed Link: 34465388

Variant Present in the following documents:

• 13578_2021_675_MOESM4_ESM.pdf

View BVdb publication page

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Effect of intrapulmonary percussive ventilation on intensive care unit length of stay, the incidence of pneumonia and gas exchange in critically ill patients: A systematic review.

Plos One

Hassan, Anwar A; Lai, William W; Alison, Jennifer J; Huang, Stephen S; Milross, Maree M

Publication Date: 2021

Variant appearance in text: 225: A54A

PubMed Link: 34320018

Variant Present in the following documents:

• Main text

View BVdb publication page

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A survey of Hebeloma (Hymenogastraceae) in Greenland.

Mycokeys

Eberhardt, Ursula U; Beker, Henry J HJ; Borgen, Torbjørn T; Knudsen, Henning H; Schütz, Nicole N; Elborne, Steen A SA

Publication Date: 2021

Variant appearance in text: 225: A54A

PubMed Link: 33958950

Variant Present in the following documents:

• Main text

View BVdb publication page

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Targeting natural splicing plasticity of APOBEC3B restricts its expression and mutagenic activity.

Communications Biology

Rouf Banday, A A; Onabajo, Olusegun O OO; Lin, Seraph Han-Yin SH; Obajemu, Adeola A; Vargas, Joselin M JM; Delviks-Frankenberry, Krista A KA; Lamy, Philippe P; Bayanjargal, Ariunaa A; Zettelmeyer, Clara C; Florez-Vargas, Oscar O; Pathak, Vinay K VK; Dyrskjøt, Lars L; Prokunina-Olsson, Ludmila L

Publication Date: 2021-03-22

Variant appearance in text: 225: A54A

PubMed Link: 33753867

Variant Present in the following documents:

• 42003_2021_1844_MOESM3_ESM.xlsx, sheet 2

View BVdb publication page

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Genomic analysis of the prognostic effect of tumor-associated neutrophil-related genes across 15 solid cancer types: an immune perspective.

Annals Of Translational Medicine

Hao, Yuying Y; Hu, Pingping P; Zhang, Jiandong J

Publication Date: 2020-11

Variant appearance in text: 225: A54A

PubMed Link: 33313252

Variant Present in the following documents:

• atm-08-22-1507-supplementary.pdf

View BVdb publication page

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North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study.

Frontiers In Plant Science

Banoo, Aqleema A; Nabi, Asha A; Rasool, Rovidha S RS; Mahiya-Farooq, ; Shah, Mehraj D MD; Ahmad, Mushtaq M; Sofi, Parvaze A PA; Aasiya-Nabi, ; Itoo, Hamidullah H; Sharma, P N PN; Padder, Bilal A BA

Publication Date: 2020

Variant appearance in text: 225: 162C>A; Ala54Ala

PubMed Link: 33123180

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

View BVdb publication page

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Integrated molecular characterization reveals potential therapeutic strategies for pulmonary sarcomatoid carcinoma.

Nature Communications

Yang, Zhenlin Z; Xu, Jiachen J; Li, Lin L; Li, Renda R; Wang, Yalong Y; Tian, Yanhua Y; Guo, Wei W; Wang, Zhijie Z; Tan, Fengwei F; Ying, Jianming J; Jiao, Yuchen Y; Gao, Shugeng S; Wang, Jie J; Gao, Yibo Y; He, Jie J

Publication Date: 2020-09-28

Variant appearance in text: 225: A54A

PubMed Link: 32985499

Variant Present in the following documents:

• 41467_2020_18702_MOESM8_ESM.xlsx, sheet 2

View BVdb publication page

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High-density genetic linkage-map construction of hawthorn and QTL mapping for important fruit traits.

Plos One

Zhao, Yuhui Y; Zhao, Yidi Y; Guo, Yinshan Y; Su, Kai K; Shi, Xiaochang X; Liu, Di D; Zhang, Jijun J

Publication Date: 2020

Variant appearance in text: 225: Ala54Ala

PubMed Link: 32045463

Variant Present in the following documents:

• pone.0229020.s004.xlsx, sheet 1

View BVdb publication page

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Molecular subtypes based on DNA methylation predict prognosis in colon adenocarcinoma patients.

Aging

Yang, Changshun C; Zhang, Yu Y; Xu, Xiaoqin X; Li, Weihua W

Publication Date: 2019-12-18

Variant appearance in text: N/A

PubMed Link: 31852837

Variant Present in the following documents:

View BVdb publication page

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Lack of detectable neoantigen depletion signals in the untreated cancer genome.

Nature Genetics

Van den Eynden, Jimmy J; Jiménez-Sánchez, Alejandro A; Miller, Martin L ML; Larsson, Erik E

Publication Date: 2019-12

Variant appearance in text: N/A

PubMed Link: 31768072

Variant Present in the following documents:

View BVdb publication page

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Identification of Single Nucleotide Polymorphism in Red Clover (Trifolium pratense L.) Using Targeted Genomic Amplicon Sequencing and RNA-seq.

Frontiers In Plant Science

Li, Wenli W; Riday, Heathcliffe H; Riehle, Christina C; Edwards, Andrea A; Dinkins, Randy R

Publication Date: 2019

Variant appearance in text: 225: 162C>A

PubMed Link: 31708937

Variant Present in the following documents:

• DataSheet_2.xlsx, sheet 1

View BVdb publication page

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Crigler-Najjar Syndrome Type 1: Pathophysiology, Natural History, and Therapeutic Frontier.

Hepatology (Baltimore, Md.)

Strauss, Kevin A KA; Ahlfors, Charles E CE; Soltys, Kyle K; Mazareigos, George V GV; Young, Millie M; Bowser, Lauren E LE; Fox, Michael D MD; Squires, James E JE; McKiernan, Patrick P; Brigatti, Karlla W KW; Puffenberger, Erik G EG; Carson, Vincent J VJ; Vreman, Hendrik J HJ

Publication Date: 2020-06

Variant appearance in text: 225: A54A

PubMed Link: 31553814

Variant Present in the following documents:

• Main text

View BVdb publication page

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Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis.

Nature Communications

Vedanayagam, Jeffrey J; Chatila, Walid K WK; Aksoy, Bülent Arman BA; Majumdar, Sonali S; Skanderup, Anders Jacobsen AJ; Demir, Emek E; Schultz, Nikolaus N; Sander, Chris C; Lai, Eric C EC

Publication Date: 2019-08-15

Variant appearance in text: 225: A54A

PubMed Link: 31417090

Variant Present in the following documents:

• 41467_2019_11610_MOESM10_ESM.xlsx, sheet 3

View BVdb publication page

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Tumor genomic alterations in severe-combined immunodeficiency bare-lymphocyte syndrome genes are associated with high mutational burden and disproportional neo-antigen rates.

Journal For Immunotherapy Of Cancer

Wang, Yu Y; Johnson, Douglas B DB; Lu, Steve S; Diaz, Luis A LA; Xu, Yaomin Y; Balko, Justin M JM

Publication Date: 2019-05-07

Variant appearance in text: 225: A54A

PubMed Link: 31064401

Variant Present in the following documents:

• 40425_2019_584_MOESM3_ESM.xls, sheet 4

View BVdb publication page

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Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: 225: 162C>A; Ala54Ala

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

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Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

Cuypers, Bart B; Berg, Maya M; Imamura, Hideo H; Dumetz, Franck F; De Muylder, Géraldine G; Domagalska, Malgorzata A MA; Rijal, Suman S; Bhattarai, Narayan Raj NR; Maes, Ilse I; Sanders, Mandy M; Cotton, James A JA; Meysman, Pieter P; Laukens, Kris K; Dujardin, Jean-Claude JC

Publication Date: 2018-08

Variant appearance in text: 225: 162C>A

PubMed Link: 29679745

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 162C>A

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.

Plos Neglected Tropical Diseases

Carnes, Jason J; Anupama, Atashi A; Balmer, Oliver O; Jackson, Andrew A; Lewis, Michael M; Brown, Rob R; Cestari, Igor I; Desquesnes, Marc M; Gendrin, Claire C; Hertz-Fowler, Christiane C; Imamura, Hideo H; Ivens, Alasdair A; Kořený, Luděk L; Lai, De-Hua DH; MacLeod, Annette A; McDermott, Suzanne M SM; Merritt, Chris C; Monnerat, Severine S; Moon, Wonjong W; Myler, Peter P; Phan, Isabelle I; Ramasamy, Gowthaman G; Sivam, Dhileep D; Lun, Zhao-Rong ZR; Lukeš, Julius J; Stuart, Ken K; Schnaufer, Achim A

Publication Date: 2015-01

Variant appearance in text: 225: Ala54Ala

PubMed Link: 25568942

Variant Present in the following documents:

• pntd.0003404.s019.xlsx, sheet 1

View BVdb publication page

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