Publications:

---

Circulating messenger RNA variants as a potential biomarker for surveillance of hepatocellular carcinoma.

Frontiers In Oncology

Block, Timothy T; Zezulinski, Daniel D; Kaplan, David E DE; Lu, Jingqiao J; Zanine, Samantha S; Zhan, Tingting T; Doria, Cataldo C; Sayeed, Aejaz A

Publication Date: 2022

Variant appearance in text: 225: Ser84Leu

PubMed Link: 36582804

Variant Present in the following documents:

• Table_6.xlsx, sheet 1

View BVdb publication page

---

The Delta and Omicron Variants of SARS-CoV-2: What We Know So Far.

Vaccines

Chavda, Vivek P VP; Bezbaruah, Rajashri R; Deka, Kangkan K; Nongrang, Lawandashisha L; Kalita, Tutumoni T

Publication Date: 2022-11-14

Variant appearance in text: 225: S84L

PubMed Link: 36423021

Variant Present in the following documents:

• Main text
• vaccines-10-01926.pdf

View BVdb publication page

---

SARS-CoV-2 delta variant infection in domestic dogs and cats, Thailand.

Scientific Reports

Jairak, Waleemas W; Chamsai, Ekkapat E; Udom, Kitikhun K; Charoenkul, Kamonpan K; Chaiyawong, Supassama S; Techakriengkrai, Navapon N; Tangwangvivat, Ratanaporn R; Suwannakarn, Kamol K; Amonsin, Alongkorn A

Publication Date: 2022-05-19

Variant appearance in text: 225: S84L

PubMed Link: 35589808

Variant Present in the following documents:

• Main text
• 41598_2022_Article_12468.pdf

View BVdb publication page

---

Phylogenetic analysis of 17271 Indian SARS-CoV-2 genomes to identify temporal and spatial hotspot mutations.

Plos One

Ghosh, Nimisha N; Nandi, Suman S; Saha, Indrajit I

Publication Date: 2022

Variant appearance in text: 225: S84L

PubMed Link: 35344550

Variant Present in the following documents:

• Main text
• pone.0265579.pdf

View BVdb publication page

---

KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: S84L

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 8

View BVdb publication page

---

KLF3 and PAX6 are candidate driver genes in late-stage, MSI-hypermutated endometrioid endometrial carcinomas.

Plos One

Rudd, Meghan L ML; Hansen, Nancy F NF; Zhang, Xiaolu X; Urick, Mary Ellen ME; Zhang, Suiyuan S; Merino, Maria J MJ; , ; Mullikin, James C JC; Brody, Lawrence C LC; Bell, Daphne W DW

Publication Date: 2022

Variant appearance in text: 225: S84L

PubMed Link: 35081118

Variant Present in the following documents:

• pone.0251286.s005.xlsx, sheet 8

View BVdb publication page

---

Context-specific emergence and growth of the SARS-CoV-2 Delta variant.

Research Square

Kraemer, Moritz M; McCrone, John J; Hill, Verity V; Bajaj, Sumali S; Evans-Pena, Rosario R; Lambert, Ben B; Inward, Rhys R; Bhatt, Samir S; Volz, Erik E; Ruis, Christopher C; Dellicour, Simon S; Baele, Guy G; Zarebski, Alexander A; Sadilek, Adam A; Wu, Neo N; Schneider, Aaron A; Ji, Xiang X; Raghwani, Jayna J; Jackson, Ben B; Colquhoun, Rachel R; O'Toole, Aine A; Peacock, Thomas T; Twohig, Kate K; Thelwall, Simon S; Dabrera, Gavin G; Meyers, Richard R; Faria, Nuno N; Huber, Carmen C; Khan, Kamran K; Bogoch, Isaac I; Plessis, Louis L; Barrett, Jeffrey J; Aanensen, David D; Barclay, Wendy W; Chand, Meera M; Connor, Thomas T; Loman, Nicholas N; Suchard, Marc M; Pybus, Oliver O; Rambaut, Andrew A

Publication Date: 2021-12-20

Variant appearance in text: 225: S84L

PubMed Link: 34981043

Variant Present in the following documents:

• nihpp-rs1159614v1.pdf

View BVdb publication page

---

Context-specific emergence and growth of the SARS-CoV-2 Delta variant.

Research Square

McCrone, John T JT; Hill, Verity V; Bajaj, Sumali S; Pena, Rosario Evans RE; Lambert, Ben C BC; Inward, Rhys R; Bhatt, Samir S; Volz, Erik E; Ruis, Christopher C; Dellicour, Simon S; Baele, Guy G; Zarebski, Alexander E AE; Sadilek, Adam A; Wu, Neo N; Schneider, Aaron A; Ji, Xiang X; Raghwani, Jayna J; Jackson, Ben B; Colquhoun, Rachel R; O'Toole, Áine Á; Peacock, Thomas P TP; Twohig, Kate K; Thelwall, Simon S; Dabrera, Gavin G; Myers, Richard R; , ; Faria, Nuno R NR; Huber, Carmen C; Bogoch, Isaac I II; Khan, Kamran K; du Plessis, Louis L; Barrett, Jeffrey C JC; Aanensen, David M DM; Barclay, Wendy S WS; Chand, Meera M; Connor, Thomas T; Loman, Nicholas J NJ; Suchard, Marc A MA; Pybus, Oliver G OG; Rambaut, Andrew A; Kraemer, Moritz U G MUG

Publication Date: 2021-12-20

Variant appearance in text: 225: S84L

PubMed Link: 34981043

Variant Present in the following documents:

• nihpp-rs1159614v1.pdf

View BVdb publication page

---

Severity of Illness Caused by Severe Acute Respiratory Syndrome Coronavirus 2 Variants of Concern in Children: A Single-Center Retrospective Cohort Study.

Medrxiv : The Preprint Server For Health Sciences

Edward, Priya R PR; Lorenzo-Redondo, Ramon R; Reyna, Megan E ME; Simons, Lacy M LM; Hultquist, Judd F JF; Patel, Ami B AB; Ozer, Egon A EA; Muller, William J WJ; Heald-Sargent, Taylor T; McHugh, Matthew M; Dean, Taylor J TJ; Dalal, Raj M RM; John, Jordan J; Manz, Shannon C SC; Kociolek, Larry K LK

Publication Date: 2021-10-26

Variant appearance in text: 225: S84L

PubMed Link: 34729568

Variant Present in the following documents:

• Main text
• nihpp-2021.10.23.21265402v1.pdf

View BVdb publication page

---

On the origin and continuing evolution of SARS-CoV-2.

National Science Review

Tang, Xiaolu X; Wu, Changcheng C; Li, Xiang X; Song, Yuhe Y; Yao, Xinmin X; Wu, Xinkai X; Duan, Yuange Y; Zhang, Hong H; Wang, Yirong Y; Qian, Zhaohui Z; Cui, Jie J; Lu, Jian J

Publication Date: 2020-06

Variant appearance in text: 225: S84L

PubMed Link: 34676127

Variant Present in the following documents:

• Main text
• nwaa036.pdf

View BVdb publication page

---

Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition.

Molecular & Cellular Proteomics : Mcp

Schmitt, Marisa M; Sinnberg, Tobias T; Bratl, Katrin K; Zittlau, Katharina K; Garbe, Claus C; Macek, Boris B; Nalpas, Nicolas C NC

Publication Date: 2021-10-19

Variant appearance in text: 225: S84L

PubMed Link: 34673281

Variant Present in the following documents:

• mmc2.xlsx, sheet 3

View BVdb publication page

---

Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition.

Molecular & Cellular Proteomics : Mcp

Schmitt, Marisa M; Sinnberg, Tobias T; Bratl, Katrin K; Zittlau, Katharina K; Garbe, Claus C; Macek, Boris B; Nalpas, Nicolas C NC

Publication Date: 2021

Variant appearance in text: 225: S84L

PubMed Link: 34673281

Variant Present in the following documents:

• mmc2.xlsx, sheet 3

View BVdb publication page

---

Home-based SARS-CoV-2 lateral flow antigen testing in hospital workers.

The Journal Of Infection

Downs, Louise O LO; Eyre, David W DW; O'Donnell, Denise D; Jeffery, Katie K

Publication Date: 2021-02

Variant appearance in text: 225: S84L

PubMed Link: 33573777

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

TSP-based PCR for rapid identification of L and S type strains of SARS-CoV-2.

Indian Journal Of Medical Microbiology

Borkakoty, Biswajyoti B; Bali, Nargis K NK

Publication Date: 2021-01

Variant appearance in text: 225: S84L

PubMed Link: 33460733

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

---

The implementation of an active surveillance integrating information technology and drive-through coronavirus testing station for suspected COVID-19 cases.

The Journal Of Infection

Chen, Hung-Jui HJ; Lin, Hung-Jung HJ; Wu, Mei-Chen MC; Tang, Hung-Jen HJ; Su, Bo-An BA; Lai, Chih-Cheng CC

Publication Date: 2021-02

Variant appearance in text: 225: S84L

PubMed Link: 32890596

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

Setting the criteria for SARS-CoV-2 reinfection - six possible cases.

The Journal Of Infection

Tomassini, Sara S; Kotecha, Deevia D; Bird, Paul W PW; Folwell, Andrew A; Biju, Simon S; Tang, Julian W JW

Publication Date: 2021-02

Variant appearance in text: 225: S84L

PubMed Link: 32800801

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

The role of myoglobin in epithelial cancers: Insights from transcriptomics.

International Journal Of Molecular Medicine

Bicker, Anne A; Nauth, Theresa T; Gerst, Daniela D; Aboouf, Mostafa Ahmed MA; Fandrey, Joachim J; Kristiansen, Glen G; Gorr, Thomas Alexander TA; Hankeln, Thomas T

Publication Date: 2020-02

Variant appearance in text: 225: Ser84Leu

PubMed Link: 31894249

Variant Present in the following documents:

• Supplementary_Data2.xlsx, sheet 6

View BVdb publication page

---

Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: Ser84Leu

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids.

Scientific Reports

Li, Dejun D; Zeng, Rizhong R; Li, Yan Y; Zhao, Manman M; Chao, Jinquan J; Li, Yu Y; Wang, Kai K; Zhu, Lihuang L; Tian, Wei-Min WM; Liang, Chengzhi C

Publication Date: 2016-04-25

Variant appearance in text: 225: S84L

PubMed Link: 27108962

Variant Present in the following documents:

• srep24984-s4.xls, sheet 2

View BVdb publication page

---

A highly recurrent RPS27 5'UTR mutation in melanoma.

Oncotarget

Dutton-Regester, Ken K; Gartner, Jared J JJ; Emmanuel, Rafi R; Qutob, Nouar N; Davies, Michael A MA; Gershenwald, Jeffrey E JE; Robinson, William W; Robinson, Steven S; Rosenberg, Steven A SA; Scolyer, Richard A RA; Mann, Graham J GJ; Thompson, John F JF; Hayward, Nicholas K NK; Samuels, Yardena Y

Publication Date: 2014-05-30

Variant appearance in text: 225: S84L

PubMed Link: 24913145

Variant Present in the following documents:

• oncotarget-05-2912-s003.xlsx, sheet 1

View BVdb publication page

---