Publications:

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Within-host rhinovirus evolution in upper and lower respiratory tract highlights capsid variability and mutation-independent compartmentalization.

Biorxiv : The Preprint Server For Biology

Makhsous, Negar N; Goya, Stephanie S; Avendaño, Carlos C; Rupp, Jason J; Kuypers, Jane J; Jerome, Keith R KR; Boeckh, Michael M; Waghmare, Alpana A; Greninger, Alexander L AL

Publication Date: 2023-05-11

Variant appearance in text: 225: D215H

PubMed Link: 37214809

Variant Present in the following documents:

• media-2.xlsx, sheet 2

View BVdb publication page

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A multi-population-based genomic analysis uncovers unique haplotype variants and crucial mutant genes in SARS-CoV-2.

Journal, Genetic Engineering & Biotechnology

Sheikh, Afzal A; Huang, He H; Parvin, Sultana S; Badruzzaman, Mohammad M; Ahamed, Tofayel T; Hossain, Ekhtear E; Baran, Iri Sato IS; Saud, Zahangir Alam ZA

Publication Date: 2022-11-01

Variant appearance in text: 225: D215H

PubMed Link: 36318347

Variant Present in the following documents:

• 43141_2022_431_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

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SARS-CoV-2 variant evasion of monoclonal antibodies based on in vitro studies.

Nature Reviews. Microbiology

Cox, MacGregor M; Peacock, Thomas P TP; Harvey, William T WT; Hughes, Joseph J; Wright, Derek W DW; , ; Willett, Brian J BJ; Thomson, Emma E; Gupta, Ravindra K RK; Peacock, Sharon J SJ; Robertson, David L DL; Carabelli, Alessandro M AM

Publication Date: 2022-10-28

Variant appearance in text: 225: D215H

PubMed Link: 36307535

Variant Present in the following documents:

• 41579_2022_809_MOESM2_ESM.xlsx, sheet 2

View BVdb publication page

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Lessons learned and implications of early therapies for coronavirus disease in a territorial service centre in the Calabria region: a retrospective study.

Bmc Infectious Diseases

Scaglione, Vincenzo V; Rotundo, Salvatore S; Marascio, Nadia N; De Marco, Carmela C; Lionello, Rosaria R; Veneziano, Claudia C; Berardelli, Lavinia L; Quirino, Angela A; Olivadese, Vincenzo V; Serapide, Francesca F; Tassone, Bruno B; Morrone, Helen Linda HL; Davoli, Chiara C; La Gamba, Valentina V; Bruni, Andrea A; Cesana, Bruno Mario BM; Matera, Giovanni G; Russo, Alessandro A; Costanzo, Francesco Saverio FS; Viglietto, Giuseppe G; Trecarichi, Enrico Maria EM; Torti, Carlo C; ,

Publication Date: 2022-10-20

Variant appearance in text: 225: 643G>C

PubMed Link: 36266619

Variant Present in the following documents:

• 12879_2022_7774_MOESM2_ESM.pdf

View BVdb publication page

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Monitoring of the SARS-CoV-2 Omicron BA.1/BA.2 lineage transition in the Swedish population reveals increased viral RNA levels in BA.2 cases.

Med (New York, N.Y.)

Lentini, Antonio A; Pereira, Antonio A; Winqvist, Ola O; Reinius, Björn B

Publication Date: 2022-09-09

Variant appearance in text: 225: D215H

PubMed Link: 35981541

Variant Present in the following documents:

• mmc7.xlsx, sheet 1

View BVdb publication page

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Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Nature Communications

Havugimana, Pierre C PC; Goel, Raghuveera Kumar RK; Phanse, Sadhna S; Youssef, Ahmed A; Padhorny, Dzmitry D; Kotelnikov, Sergei S; Kozakov, Dima D; Emili, Andrew A

Publication Date: 2022-07-13

Variant appearance in text: 225: 643G>C

PubMed Link: 35831314

Variant Present in the following documents:

• 41467_2022_31809_MOESM8_ESM.xlsx, sheet 3

View BVdb publication page

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Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals.

Cell Reports. Medicine

Tarke, Alison A; Sidney, John J; Methot, Nils N; Yu, Esther Dawen ED; Zhang, Yun Y; Dan, Jennifer M JM; Goodwin, Benjamin B; Rubiro, Paul P; Sutherland, Aaron A; Wang, Eric E; Frazier, April A; Ramirez, Sydney I SI; Rawlings, Stephen A SA; Smith, Davey M DM; da Silva Antunes, Ricardo R; Peters, Bjoern B; Scheuermann, Richard H RH; Weiskopf, Daniela D; Crotty, Shane S; Grifoni, Alba A; Sette, Alessandro A

Publication Date: 2021-07-20

Variant appearance in text: 225: D215H

PubMed Link: 34230917

Variant Present in the following documents:

• mmc1.pdf
• mmc2.pdf

View BVdb publication page

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Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees.

Biorxiv : The Preprint Server For Biology

Tarke, Alison A; Sidney, John J; Methot, Nils N; Zhang, Yun Y; Dan, Jennifer M JM; Goodwin, Benjamin B; Rubiro, Paul P; Sutherland, Aaron A; da Silva Antunes, Ricardo R; Frazier, April A; Rawlings, Stephen A SA; Smith, Davey M DM; Peters, Bjoern B; Scheuermann, Richard H RH; Weiskopf, Daniela D; Crotty, Shane S; Grifoni, Alba A; Sette, Alessandro A

Publication Date: 2021-03-01

Variant appearance in text: 225: D215H

PubMed Link: 33688655

Variant Present in the following documents:

• nihpp-2021.02.27.433180.pdf
• NIHPP2021.02.27.433180-supplement-1.pdf

View BVdb publication page

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A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins.

Journal Of Medicinal Chemistry

Povedano, Juan Manuel JM; Rallabandi, Rameshu R; Bai, Xin X; Ye, Xuecheng X; Liou, Joel J; Chen, Hong H; Kim, Jiwoong J; Xie, Yang Y; Posner, Bruce B; Rice, Luke L; De Brabander, Jef K JK; McFadden, David G DG

Publication Date: 2020-11-25

Variant appearance in text: 225: 643G>C

PubMed Link: 33180487

Variant Present in the following documents:

• jm0c01482_si_002.xlsx, sheet 1

View BVdb publication page

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Comprehensive annotations of the mutational spectra of SARS-CoV-2 spike protein: a fast and accurate pipeline.

Transboundary And Emerging Diseases

Rahman, Mohammad Shaminur MS; Islam, Mohammad Rafiul MR; Hoque, Mohammad Nazmul MN; Alam, Abu Sayed Mohammad Rubayet Ul ASMRU; Akther, Masuda M; Puspo, Joynob Akter JA; Akter, Salma S; Anwar, Azraf A; Sultana, Munawar M; Hossain, Mohammad Anwar MA

Publication Date: 2021-05

Variant appearance in text: 225: D215H

PubMed Link: 32954666

Variant Present in the following documents:

• TBED-9999-na-s003.xlsx, sheet 1

View BVdb publication page

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Genomic Features of Response to Combination Immunotherapy in Patients with Advanced Non-Small-Cell Lung Cancer.

Cancer Cell

Hellmann, Matthew D MD; Nathanson, Tavi T; Rizvi, Hira H; Creelan, Benjamin C BC; Sanchez-Vega, Francisco F; Ahuja, Arun A; Ni, Ai A; Novik, Jacki B JB; Mangarin, Levi M B LMB; Abu-Akeel, Mohsen M; Liu, Cailian C; Sauter, Jennifer L JL; Rekhtman, Natasha N; Chang, Eliza E; Callahan, Margaret K MK; Chaft, Jamie E JE; Voss, Martin H MH; Tenet, Megan M; Li, Xue-Mei XM; Covello, Kelly K; Renninger, Andrea A; Vitazka, Patrik P; Geese, William J WJ; Borghaei, Hossein H; Rudin, Charles M CM; Antonia, Scott J SJ; Swanton, Charles C; Hammerbacher, Jeff J; Merghoub, Taha T; McGranahan, Nicholas N; Snyder, Alexandra A; Wolchok, Jedd D JD

Publication Date: 2018-05-14

Variant appearance in text: 225: D215H

PubMed Link: 29657128

Variant Present in the following documents:

• mmc3.xlsx, sheet 3

View BVdb publication page

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Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 643G>C

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

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