Publications:

---

SARS-CoV-2 evolved variants optimize binding to cellular glycocalyx.

Cell Reports. Physical Science

Kim, Sang Hoon SH; Kearns, Fiona L FL; Rosenfeld, Mia A MA; Votapka, Lane L; Casalino, Lorenzo L; Papanikolas, Micah M; Amaro, Rommie E RE; Freeman, Ronit R

Publication Date: 2023-04-19

Variant appearance in text: 225: D215G

PubMed Link: 37077408

Variant Present in the following documents:

• mmc1.pdf
• mmc3.pdf

View BVdb publication page

---

Homologous Ad26.COV2.S vaccination results in reduced boosting of humoral responses in hybrid immunity, but elicits antibodies of similar magnitude regardless of prior infection.

Medrxiv : The Preprint Server For Health Sciences

Moyo-Gwete, Thandeka T; Richardson, Simone I SI; Keeton, Roanne R; Hermanus, Tandile T; Spencer, Holly H; Manamela, Nelia P NP; Ayres, Frances F; Makhado, Zanele Z; Motlou, Thopisang T; Tincho, Marius B MB; Benede, Ntombi N; Ngomti, Amkele A; Baguma, Richard R; Chauke, Masego V MV; Mennen, Mathilda M; Adriaanse, Marguerite M; Skelem, Sango S; Goga, Ameena A; Garrett, Nigel N; Bekker, Linda-Gail LG; Gray, Glenda G; Ntusi, Ntobeko A B NAB; Riou, Catherine C; Burgers, Wendy A WA; Moore, Penny L PL

Publication Date: 2023-03-15

Variant appearance in text: 225: D215G

PubMed Link: 36993404

Variant Present in the following documents:

• nihpp-2023.03.15.23287288v1.pdf

View BVdb publication page

---

Structural dynamics in the evolution of SARS-CoV-2 spike glycoprotein.

Nature Communications

Calvaresi, Valeria V; Wrobel, Antoni G AG; Toporowska, Joanna J; Hammerschmid, Dietmar D; Doores, Katie J KJ; Bradshaw, Richard T RT; Parsons, Ricardo B RB; Benton, Donald J DJ; Roustan, Chloë C; Reading, Eamonn E; Malim, Michael H MH; Gamblin, Steve J SJ; Politis, Argyris A

Publication Date: 2023-03-14

Variant appearance in text: 225: D215G

PubMed Link: 36918534

Variant Present in the following documents:

• 41467_2023_36745_MOESM1_ESM.pdf

View BVdb publication page

---

COVID-19: Attacks Immune Cells and Interferences With Antigen Presentation Through MHC-Like Decoy System.

Journal Of Immunotherapy (Hagerstown, Md. : 1997)

Liu, Wenzhong W; Li, Hualan H

Publication Date: 2023-02-20

Variant appearance in text: 225: D215G

PubMed Link: 36799912

Variant Present in the following documents:

• cji-46-75.pdf

View BVdb publication page

---

Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania.

Frontiers In Medicine

Mziray, Shabani Ramadhani SR; van Zwetselaar, Marco M; Kayuki, Charles C CC; Mbelele, Peter M PM; Makubi, Abel N AN; Magesa, Alex S AS; Kisonga, Riziki M RM; Sonda, Tolbert B TB; Kibiki, Gibson S GS; Githinji, George G; Heysell, Scott K SK; Chilongola, Jaffu O JO; Mpagama, Stellah G SG

Publication Date: 2022

Variant appearance in text: 225: D215G

PubMed Link: 36687433

Variant Present in the following documents:

• fmed-09-1034682.pdf

View BVdb publication page

---

Circulating messenger RNA variants as a potential biomarker for surveillance of hepatocellular carcinoma.

Frontiers In Oncology

Block, Timothy T; Zezulinski, Daniel D; Kaplan, David E DE; Lu, Jingqiao J; Zanine, Samantha S; Zhan, Tingting T; Doria, Cataldo C; Sayeed, Aejaz A

Publication Date: 2022

Variant appearance in text: 225: 644A>G

PubMed Link: 36582804

Variant Present in the following documents:

• Table_6.xlsx, sheet 1

View BVdb publication page

---

Surface-modified measles vaccines encoding oligomeric, fusion-stabilized SARS-CoV-2 spike glycoproteins bypass measles seropositivity, boosting neutralizing antibody responses to omicron and historical variants.

Biorxiv : The Preprint Server For Biology

Muñoz-Alía, Miguel Á MÁ; Nace, Rebecca A RA; Balakrishnan, Baskar B; Zhang, Lianwen L; Packiriswamy, Nandakumar N; Singh, Gagandeep G; Warang, Prajakta P; Mena, Ignacio I; Narjari, Riya R; Vandergaast, Rianna R; García-Sastre, Adolfo A; Schotsaert, Michael M; Russell, Stephen J SJ

Publication Date: 2022-12-16

Variant appearance in text: 225: D215G

PubMed Link: 36561187

Variant Present in the following documents:

• nihpp-2022.12.16.520799v1.pdf

View BVdb publication page

---

Immunocompromised Patients with Protracted COVID-19: a Review of "Long Persisters".

Current Transplantation Reports

Dioverti, Veronica V; Salto-Alejandre, Sonsoles S; Haidar, Ghady G

Publication Date: 2022

Variant appearance in text: 225: D215G

PubMed Link: 36407883

Variant Present in the following documents:

• 40472_2022_Article_385.pdf

View BVdb publication page

---

Rapid SARS-CoV-2 Variants Enzymatic Detection (SAVED) by CRISPR-Cas12a.

Microbiology Spectrum

Yang, Jun J; Barua, Nilakshi N; Rahman, Md Nannur MN; Li, Carmen C; Lo, Norman N; Yeong, Kai Yan KY; Tsang, Tsz Fung TF; Yang, Xiao X; Cheung, Yuk-Yam YY; Tsang, Alan K L AKL; Chan, Rickjason C W RCW; Leung, Eddie Chi-Man EC; Chan, Paul K S PKS; Ip, Margaret M

Publication Date: 2022-11-07

Variant appearance in text: 225: D215G

PubMed Link: 36342324

Variant Present in the following documents:

• spectrum.03260-22-s0001.pdf

View BVdb publication page

---

A multi-population-based genomic analysis uncovers unique haplotype variants and crucial mutant genes in SARS-CoV-2.

Journal, Genetic Engineering & Biotechnology

Sheikh, Afzal A; Huang, He H; Parvin, Sultana S; Badruzzaman, Mohammad M; Ahamed, Tofayel T; Hossain, Ekhtear E; Baran, Iri Sato IS; Saud, Zahangir Alam ZA

Publication Date: 2022-11-01

Variant appearance in text: 225: D215G

PubMed Link: 36318347

Variant Present in the following documents:

• 43141_2022_431_MOESM5_ESM.xlsx, sheet 1

View BVdb publication page

---

Evolution of antibody immunity following Omicron BA.1 breakthrough infection.

Biorxiv : The Preprint Server For Biology

Kaku, Chengzi I CI; Starr, Tyler N TN; Zhou, Panpan P; Dugan, Haley L HL; Khalifé, Paul P; Song, Ge G; Champney, Elizabeth R ER; Mielcarz, Daniel W DW; Geoghegan, James C JC; Burton, Dennis R DR; Andrabi, Raiees R; Bloom, Jesse D JD; Walker, Laura M LM

Publication Date: 2022-09-22

Variant appearance in text: 225: D215G

PubMed Link: 36172124

Variant Present in the following documents:

• nihpp-2022.09.21.508922v1.pdf

View BVdb publication page

---

The mechanisms of immune response and evasion by the main SARS-CoV-2 variants.

Iscience

Chen, Qiuli Q; Zhang, Jiawei J; Wang, Peter P; Zhang, Zuyong Z

Publication Date: 2022-10-21

Variant appearance in text: 225: D215G

PubMed Link: 36068846

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

Neutralizing immunity against SARS-CoV-2 Omicron BA.1 by infection and vaccination.

Iscience

Duan, Li-Jun LJ; Jiang, Wen-Guo WG; Wang, Zhuang-Ye ZY; Yao, Lin L; Zhu, Ka-Li KL; Meng, Qing-Chuan QC; Wang, Bao-Shan BS; Li, Li-Bo LB; Wang, Guo-Lin GL; Ma, Mai-Juan MJ

Publication Date: 2022-09-16

Variant appearance in text: 225: D215G

PubMed Link: 35966041

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

Progressive membrane-binding mechanism of SARS-CoV-2 variant spike proteins.

Iscience

Overduin, Michael M; Kervin, Troy A TA; Tran, Anh A

Publication Date: 2022-08-19

Variant appearance in text: 225: D215G

PubMed Link: 35813872

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

Mutation informatics: SARS-CoV-2 receptor-binding domain of the spike protein.

Drug Discovery Today

Verma, Saroj S; Patil, Vaishali M VM; Gupta, Manish K MK

Publication Date: 2022-10

Variant appearance in text: 225: D215G

PubMed Link: 35787481

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

Temporal changes in the accessory protein mutations of SARS-CoV-2 variants and their predicted structural and functional effects.

Journal Of Medical Virology

Cruz, Christian Alfredo K CAK; Medina, Paul Mark B PMB

Publication Date: 2022-11

Variant appearance in text: 225: D215G

PubMed Link: 35764775

Variant Present in the following documents:

• JMV-9999-0-s001.pdf

View BVdb publication page

---

SARS-CoV-2 whole-proteome sequences from environment as an indicator of community viral distribution, evolution and epidemiological dynamics: A cohort analysis of Austria.

Environmental Microbiology Reports

Magateshvaren Saras, Murali Aadhitya MA; Patro, L Ponoop Prasad LPP; Uttamrao, Patil Pranita PP; Rathinavelan, Thenmalarchelvi T

Publication Date: 2022-12

Variant appearance in text: 225: D215G

PubMed Link: 35718540

Variant Present in the following documents:

• EMI4-9999-0-s003.xlsx, sheet 1

View BVdb publication page

---

A robust, highly multiplexed mass spectrometry assay to identify SARS-CoV-2 variants.

Medrxiv : The Preprint Server For Health Sciences

Hernandez, Matthew M MM; Banu, Radhika R; Shrestha, Paras P; Gonzalez-Reiche, Ana S AS; van de Guchte, Adriana A; Farrugia, Keith K; Sebra, Robert R; , ; Gitman, Melissa R MR; Nowak, Michael D MD; Cordon-Cardo, Carlos C; Simon, Viviana V; van Bakel, Harm H; Sordillo, Emilia Mia EM; Luna, Nicolas N; Ramirez, Angie A; Castañeda, Sergio Andres SA; Patiño, Luz Helena LH; Ballesteros, Nathalia N; Muñoz, Marina M; Ramírez, Juan David JD; Paniz-Mondolfi, Alberto E AE

Publication Date: 2022-05-29

Variant appearance in text: 225: D215G

PubMed Link: 35665019

Variant Present in the following documents:

• nihpp-2022.05.28.22275691v1.pdf

View BVdb publication page

---

Use of wastewater surveillance for early detection of Alpha and Epsilon SARS-CoV-2 variants of concern and estimation of overall COVID-19 infection burden.

The Science Of The Total Environment

Vo, Van V; Tillett, Richard L RL; Papp, Katerina K; Shen, Shirley S; Gu, Richard R; Gorzalski, Andrew A; Siao, Danielle D; Markland, Rayma R; Chang, Ching-Lan CL; Baker, Hayley H; Chen, Jingchun J; Schiller, Martin M; Betancourt, Walter Q WQ; Buttery, Erin E; Pandori, Mark M; Picker, Michael A MA; Gerrity, Daniel D; Oh, Edwin C EC

Publication Date: 2022-08-20

Variant appearance in text: 225: D215G

PubMed Link: 35469875

Variant Present in the following documents:

• mmc1.pdf

View BVdb publication page

---

Structure/Function Analysis of Truncated Amino-Terminal ACE2 Peptide Analogs That Bind to SARS-CoV-2 Spike Glycoprotein.

Molecules (Basel, Switzerland)

Mackin, Robert T RT; Edwards, J Vincent JV; Atuk, E Berk EB; Beltrami, Noah N; Condon, Brian D BD; Jayawickramarajah, Janarthanan J; French, Alfred D AD

Publication Date: 2022-03-23

Variant appearance in text: 225: D215G

PubMed Link: 35408469

Variant Present in the following documents:

• molecules-27-02070.pdf

View BVdb publication page

---

Evasion of vaccine-induced humoral immunity by emerging sub-variants of SARS-CoV-2.

Future Microbiology

Koyama, Takahiko T; Miyakawa, Kei K; Tokumasu, Reitaro R; S Jeremiah, Sundararaj S; Kudo, Michiharu M; Ryo, Akihide A

Publication Date: 2022-04

Variant appearance in text: 225: D215G

PubMed Link: 35350884

Variant Present in the following documents:

• fmb-2022-0025.pdf

View BVdb publication page

---

mRNA-1273 and BNT162b2 mRNA vaccines have reduced neutralizing activity against the SARS-CoV-2 omicron variant.

Cell Reports. Medicine

Edara, Venkata-Viswanadh VV; Manning, Kelly E KE; Ellis, Madison M; Lai, Lilin L; Moore, Kathryn M KM; Foster, Stephanie L SL; Floyd, Katharine K; Davis-Gardner, Meredith E ME; Mantus, Grace G; Nyhoff, Lindsay E LE; Bechnak, Sarah S; Alaaeddine, Ghina G; Naji, Amal A; Samaha, Hady H; Lee, Matthew M; Bristow, Laurel L; Gagne, Matthew M; Roberts-Torres, Jesmine J; Henry, Amy R AR; Godbole, Sucheta S; Grakoui, Arash A; Saxton, Marybeth M; Piantadosi, Anne A; Waggoner, Jesse J JJ; Douek, Daniel C DC; Rouphael, Nadine N; Wrammert, Jens J; Suthar, Mehul S MS

Publication Date: 2022-02-15

Variant appearance in text: 225: D215G

PubMed Link: 35233550

Variant Present in the following documents:

• mmc2.pdf

View BVdb publication page

---

A SARS-CoV-2 Delta variant containing mutation in the probe binding region used for RT-qPCR test in Japan exhibited atypical PCR amplification and might induce false negative result.

Journal Of Infection And Chemotherapy : Official Journal Of The Japan Society Of Chemotherapy

Rajib, Samiul Alam SA; Ogi, Yasuhiro Y; Hossain, Md Belal MB; Ikeda, Terumasa T; Tanaka, Eiichi E; Kawaguchi, Tatsuya T; Satou, Yorifumi Y

Publication Date: 2022-05

Variant appearance in text: 225: D215G

PubMed Link: 35144878

Variant Present in the following documents:

• mmc2.xls, sheet 1

View BVdb publication page

---

Engineering SARS-CoV-2 cocktail antibodies into a bispecific format improves neutralizing potency and breadth.

Biorxiv : The Preprint Server For Biology

Ku, Zhiqiang Z; Xie, Xuping X; Lin, Jianqing J; Gao, Peng P; El Sahili, Abbas A; Su, Hang H; Liu, Yang Y; Ye, Xiaohua X; Li, Xin X; Fan, Xuejun X; Goh, Boon Chong BC; Xiong, Wei W; Boyd, Hannah H; Muruato, Antonio E AE; Deng, Hui H; Xia, Hongjie H; Jing, Zou Z; Kalveram, Birte K BK; Menachery, Vineet D VD; Zhang, Ningyan N; Lescar, Julien J; Shi, Pei-Yong PY; An, Zhiqiang Z

Publication Date: 2022-02-01

Variant appearance in text: 225: D215G

PubMed Link: 35132410

Variant Present in the following documents:

• nihpp-2022.02.01.478504v1.pdf

View BVdb publication page

---

The Variation of SARS-CoV-2 and Advanced Research on Current Vaccines.

Frontiers In Medicine

Jiang, Yao Y; Wu, Qian Q; Song, Peipei P; You, Chongge C

Publication Date: 2021

Variant appearance in text: 225: D215G

PubMed Link: 35118097

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Structural biology of SARS-CoV-2: open the door for novel therapies.

Signal Transduction And Targeted Therapy

Yan, Weizhu W; Zheng, Yanhui Y; Zeng, Xiaotao X; He, Bin B; Cheng, Wei W

Publication Date: 2022-01-27

Variant appearance in text: 225: D215G

PubMed Link: 35087058

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Structural biology of SARS-CoV-2: open the door for novel therapies.

Signal Transduction And Targeted Therapy

Yan, Weizhu W; Zheng, Yanhui Y; Zeng, Xiaotao X; He, Bin B; Cheng, Wei W

Publication Date: 2022-01-27

Variant appearance in text: 225: D215G

PubMed Link: 35087058

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Evaluation of Neutralizing Antibodies against SARS-CoV-2 Variants after Infection and Vaccination Using a Multiplexed Surrogate Virus Neutralization Test.

Clinical Chemistry

Lynch, Kara L KL; Zhou, Shuxia S; Kaul, Ravi R; Walker, Roger R; Wu, Alan H AH

Publication Date: 2022-05-18

Variant appearance in text: 225: D215G

PubMed Link: 35018416

Variant Present in the following documents:

• hvab283.pdf

View BVdb publication page

---

Variant analysis of SARS-CoV-2 strains with phylogenetic analysis and the Coronavirus Antiviral and Resistance Database.

Journal Of Comparative Effectiveness Research

Sayan, Murat M; Arikan, Ayse A; Isbilen, Murat M

Publication Date: 2022-01-11

Variant appearance in text: 225: D215G

PubMed Link: 35014556

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Variant analysis of SARS-CoV-2 strains with phylogenetic analysis and the Coronavirus Antiviral and Resistance Database.

Journal Of Comparative Effectiveness Research

Sayan, Murat M; Arikan, Ayse A; Isbilen, Murat M

Publication Date: 2022-02

Variant appearance in text: 225: D215G

PubMed Link: 35014556

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Developing an Amplification Refractory Mutation System-Quantitative Reverse Transcription-PCR Assay for Rapid and Sensitive Screening of SARS-CoV-2 Variants of Concern.

Microbiology Spectrum

Xiong, Dongyan D; Zhang, Xiaoxu X; Shi, Mengjuan M; Wang, Nuo N; He, Ping P; Dong, Zhuo Z; Zhong, Jie J; Luo, Jing J; Wang, Yong Y; Yu, Junping J; Wei, Hongping H

Publication Date: 2022-02-23

Variant appearance in text: 225: D215G

PubMed Link: 34985323

Variant Present in the following documents:

• spectrum01438-21_supp_1_seq8.xlsx, sheet 2

View BVdb publication page

---

Escape from recognition of SARS-CoV-2 variant spike epitopes but overall preservation of T cell immunity.

Science Translational Medicine

Riou, Catherine C; Keeton, Roanne R; Moyo-Gwete, Thandeka T; Hermanus, Tandile T; Kgagudi, Prudence P; Baguma, Richard R; Valley-Omar, Ziyaad Z; Smith, Mikhail M; Tegally, Houriiyah H; Doolabh, Deelan D; Iranzadeh, Arash A; Tyers, Lynn L; Mutavhatsindi, Hygon H; Tincho, Marius B MB; Benede, Ntombi N; Marais, Gert G; Chinhoyi, Lionel R LR; Mennen, Mathilda M; Skelem, Sango S; du Bruyn, Elsa E; Stek, Cari C; , ; de Oliveira, Tulio T; Williamson, Carolyn C; Moore, Penny L PL; Wilkinson, Robert J RJ; Ntusi, Ntobeko A B NAB; Burgers, Wendy A WA

Publication Date: 2022-02-09

Variant appearance in text: 225: D215G

PubMed Link: 34931886

Variant Present in the following documents:

• NIHMS1831042-supplement-Data_file_S1.xlsx, sheet 1
• NIHMS1831042-supplement-Data_file_S3.xlsx, sheet 1
• NIHMS1831042-supplement-Supplementary_Figures.pdf

View BVdb publication page

---

The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.

Cell Host & Microbe

Liu, Chang C; Zhou, Daming D; Nutalai, Rungtiwa R; Duyvesteyn, Helen M E HME; Tuekprakhon, Aekkachai A; Ginn, Helen M HM; Dejnirattisai, Wanwisa W; Supasa, Piyada P; Mentzer, Alexander J AJ; Wang, Beibei B; Case, James Brett JB; Zhao, Yuguang Y; Skelly, Donal T DT; Chen, Rita E RE; Johnson, Sile Ann SA; Ritter, Thomas G TG; Mason, Chris C; Malik, Tariq T; Temperton, Nigel N; Paterson, Neil G NG; Williams, Mark A MA; Hall, David R DR; Clare, Daniel K DK; Howe, Andrew A; Goulder, Philip J R PJR; Fry, Elizabeth E EE; Diamond, Michael S MS; Mongkolsapaya, Juthathip J; Ren, Jingshan J; Stuart, David I DI; Screaton, Gavin R GR

Publication Date: 2021-11-27

Variant appearance in text: 225: D215G

PubMed Link: 34921776

Variant Present in the following documents:

• Main text
• main.pdf
• mmc2.pdf

View BVdb publication page

---

The antibody response to SARS-CoV-2 Beta underscores the antigenic distance to other variants.

Cell Host & Microbe

Liu, Chang C; Zhou, Daming D; Nutalai, Rungtiwa R; Duyvesteyn, Helen M E HME; Tuekprakhon, Aekkachai A; Ginn, Helen M HM; Dejnirattisai, Wanwisa W; Supasa, Piyada P; Mentzer, Alexander J AJ; Wang, Beibei B; Case, James Brett JB; Zhao, Yuguang Y; Skelly, Donal T DT; Chen, Rita E RE; Johnson, Sile Ann SA; Ritter, Thomas G TG; Mason, Chris C; Malik, Tariq T; Temperton, Nigel N; Paterson, Neil G NG; Williams, Mark A MA; Hall, David R DR; Clare, Daniel K DK; Howe, Andrew A; Goulder, Philip J R PJR; Fry, Elizabeth E EE; Diamond, Michael S MS; Mongkolsapaya, Juthathip J; Ren, Jingshan J; Stuart, David I DI; Screaton, Gavin R GR

Publication Date: 2022-01-12

Variant appearance in text: 225: D215G

PubMed Link: 34921776

Variant Present in the following documents:

• Main text
• main.pdf
• mmc2.pdf

View BVdb publication page

---

Structure and Mutations of SARS-CoV-2 Spike Protein: A Focused Overview.

Acs Infectious Diseases

Mehra, Rukmankesh R; Kepp, Kasper P KP

Publication Date: 2022-01-14

Variant appearance in text: 225: D215G

PubMed Link: 34856799

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Structure and Mutations of SARS-CoV-2 Spike Protein: A Focused Overview.

Acs Infectious Diseases

Mehra, Rukmankesh R; Kepp, Kasper P KP

Publication Date: 2021-12-02

Variant appearance in text: 225: D215G

PubMed Link: 34856799

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Heterologous infection and vaccination shapes immunity against SARS-CoV-2 variants.

Science (New York, N.Y.)

Reynolds, Catherine J CJ; Gibbons, Joseph M JM; Pade, Corinna C; Lin, Kai-Min KM; Sandoval, Diana Muñoz DM; Pieper, Franziska F; Butler, David K DK; Liu, Siyi S; Otter, Ashley D AD; Joy, George G; Menacho, Katia K; Fontana, Marianna M; Smit, Angelique A; Kele, Beatrix B; Cutino-Moguel, Teresa T; Maini, Mala K MK; Noursadeghi, Mahdad M; , ; Brooks, Tim T; Semper, Amanda A; Manisty, Charlotte C; Treibel, Thomas A TA; Moon, James C JC; , ; McKnight, Áine Á; Altmann, Daniel M DM; Boyton, Rosemary J RJ

Publication Date: 2022-01-14

Variant appearance in text: 225: D215G

PubMed Link: 34855510

Variant Present in the following documents:

• science.abm0811_sm.pdf

View BVdb publication page

---

Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2022-01-15

Variant appearance in text: 225: D215G

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

---

Cross-sectional genomic perspective of epidemic waves of SARS-CoV-2: A pan India study.

Virus Research

Kumar, Sanjeet S; Bansal, Kanika K

Publication Date: 2021-11-22

Variant appearance in text: 225: D215G

PubMed Link: 34822953

Variant Present in the following documents:

• mmc4.xlsx, sheet 1

View BVdb publication page

---

Application of omics technology to combat the COVID-19 pandemic.

Medcomm

Yang, Jingjing J; Yan, Yunzheng Y; Zhong, Wu W

Publication Date: 2021-09

Variant appearance in text: 225: D215G

PubMed Link: 34766152

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Comparing COVID-19 vaccines for their characteristics, efficacy and effectiveness against SARS-CoV-2 and variants of concern: a narrative review.

Clinical Microbiology And Infection : The Official Publication Of The European Society Of Clinical Microbiology And Infectious Diseases

Fiolet, Thibault T; Kherabi, Yousra Y; MacDonald, Conor-James CJ; Ghosn, Jade J; Peiffer-Smadja, Nathan N

Publication Date: 2021-10-27

Variant appearance in text: 225: D215G

PubMed Link: 34715347

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

---

Comparing COVID-19 vaccines for their characteristics, efficacy and effectiveness against SARS-CoV-2 and variants of concern: a narrative review.

Clinical Microbiology And Infection : The Official Publication Of The European Society Of Clinical Microbiology And Infectious Diseases

Fiolet, Thibault T; Kherabi, Yousra Y; MacDonald, Conor-James CJ; Ghosn, Jade J; Peiffer-Smadja, Nathan N

Publication Date: 2022-02

Variant appearance in text: 225: D215G

PubMed Link: 34715347

Variant Present in the following documents:

• Main text
• main.pdf

View BVdb publication page

---

Protective activity of mRNA vaccines against ancestral and variant SARS-CoV-2 strains.

Biorxiv : The Preprint Server For Biology

Ying, Baoling B; Whitener, Bradley B; VanBlargan, Laura A LA; Hassan, Ahmed O AO; Shrihari, Swathi S; Liang, Chieh-Yu CY; Karl, Courtney E CE; Mackin, Samantha S; Chen, Rita E RE; Kafai, Natasha M NM; Wilks, Samuel H SH; Smith, Derek J DJ; Carreño, Juan Manuel JM; Singh, Gagandeep G; Krammer, Florian F; Carfi, Andrea A; Elbashir, Sayda S; Edwards, Darin K DK; Thackray, Larissa B LB; Diamond, Michael S MS

Publication Date: 2021-08-26

Variant appearance in text: 225: D215G

PubMed Link: 34462745

Variant Present in the following documents:

• nihpp-2021.08.25.457693v1.pdf

View BVdb publication page

---

COVID-19: Unmasking Emerging SARS-CoV-2 Variants, Vaccines and Therapeutic Strategies.

Biomolecules

Raman, Renuka R; Patel, Krishna J KJ; Ranjan, Kishu K

Publication Date: 2021-07-06

Variant appearance in text: 225: D215G

PubMed Link: 34356617

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Evolution, correlation, structural impact and dynamics of emerging SARS-CoV-2 variants.

Computational And Structural Biotechnology Journal

Spratt, Austin N AN; Kannan, Saathvik R SR; Woods, Lucas T LT; Weisman, Gary A GA; Quinn, Thomas P TP; Lorson, Christian L CL; Sönnerborg, Anders A; Byrareddy, Siddappa N SN; Singh, Kamal K

Publication Date: 2021

Variant appearance in text: 225: D215G

PubMed Link: 34188776

Variant Present in the following documents:

• main.pdf

View BVdb publication page

---

Antibody longevity and cross-neutralizing activity following SARS-CoV-2 wave 1 and B.1.1.7 infections.

Medrxiv : The Preprint Server For Health Sciences

Dupont, Liane L; Snell, Luke B LB; Graham, Carl C; Seow, Jeffrey J; Merrick, Blair B; Lechmere, Thomas T; Hallett, Sadie R SR; Charalampous, Themoula T; Alcolea-Medina, Adela A; Huettner, Isabella I; Maguire, Thomas J A TJA; Acors, Sam S; Almeida, Nathalia N; Cox, Daniel D; Dickenson, Ruth E RE; Galao, Rui Pedro RP; Jimenez-Guardeño, Jose M JM; Kouphou, Neophytos N; Lista, Marie Jose MJ; Pickering, Suzanne S; Ortega-Prieto, Ana Maria AM; Wilson, Harry H; Winstone, Helena H; Fairhead, Cassandra C; Su, Jia J; Nebbia, Gaia G; Batra, Rahul R; Neil, Stuart S; Shankar-Hari, Manu M; Edgeworth, Jonathan D JD; Malim, Michael H MH; Doores, Katie J KJ

Publication Date: 2021-06-08

Variant appearance in text: 225: D215G

PubMed Link: 34127977

Variant Present in the following documents:

• nihpp-2021.06.07.21258351v1.pdf

View BVdb publication page

---

Landscape of epitopes targeted by T cells in 852 individuals recovered from COVID-19: Meta-analysis, immunoprevalence, and web platform.

Cell Reports. Medicine

Quadeer, Ahmed Abdul AA; Ahmed, Syed Faraz SF; McKay, Matthew R MR

Publication Date: 2021-06-15

Variant appearance in text: 225: D215G

PubMed Link: 34056627

Variant Present in the following documents:

• mmc1.pdf
• mmc3.pdf

View BVdb publication page

---

SARS-CoV-2 worldwide replication drives rapid rise and selection of mutations across the viral genome: a time-course study - potential challenge for vaccines and therapies.

Embo Molecular Medicine

Weber, Stefanie S; Ramirez, Christina M CM; Weiser, Barbara B; Burger, Harold H; Doerfler, Walter W

Publication Date: 2021-06-07

Variant appearance in text: 225: D215G

PubMed Link: 33931941

Variant Present in the following documents:

• Main text

View BVdb publication page

---

Neutralization of SARS-CoV-2 Variants B.1.429 and B.1.351.

The New England Journal Of Medicine

Shen, Xiaoying X; Tang, Haili H; Pajon, Rolando R; Smith, Gale G; Glenn, Gregory M GM; Shi, Wei W; Korber, Bette B; Montefiori, David C DC

Publication Date: 2021-06-17

Variant appearance in text: 225: D215G

PubMed Link: 33826819

Variant Present in the following documents:

• Main text
• NEJMc2103740.pdf

View BVdb publication page

---

Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees.

Biorxiv : The Preprint Server For Biology

Tarke, Alison A; Sidney, John J; Methot, Nils N; Zhang, Yun Y; Dan, Jennifer M JM; Goodwin, Benjamin B; Rubiro, Paul P; Sutherland, Aaron A; da Silva Antunes, Ricardo R; Frazier, April A; Rawlings, Stephen A SA; Smith, Davey M DM; Peters, Bjoern B; Scheuermann, Richard H RH; Weiskopf, Daniela D; Crotty, Shane S; Grifoni, Alba A; Sette, Alessandro A

Publication Date: 2021-03-01

Variant appearance in text: 225: D215G

PubMed Link: 33688655

Variant Present in the following documents:

• NIHPP2021.02.27.433180-supplement-1.pdf
• nihpp-2021.02.27.433180.pdf

View BVdb publication page

---

A glycan gate controls opening of the SARS-CoV-2 spike protein.

Biorxiv : The Preprint Server For Biology

Sztain, Terra T; Ahn, Surl-Hee SH; Bogetti, Anthony T AT; Casalino, Lorenzo L; Goldsmith, Jory A JA; Seitz, Evan E; McCool, Ryan S RS; Kearns, Fiona L FL; Acosta-Reyes, Francisco F; Maji, Suvrajit S; Mashayekhi, Ghoncheh G; McCammon, J Andrew JA; Ourmazd, Abbas A; Frank, Joachim J; McLellan, Jason S JS; Chong, Lillian T LT; Amaro, Rommie E RE

Publication Date: 2021-05-17

Variant appearance in text: 225: D215G

PubMed Link: 33619492

Variant Present in the following documents:

• nihpp-2021.02.15.431212v2.pdf

View BVdb publication page

---

Antibody Resistance of SARS-CoV-2 Variants B.1.351 and B.1.1.7.

Biorxiv : The Preprint Server For Biology

Wang, Pengfei P; Nair, Manoj S MS; Liu, Lihong L; Iketani, Sho S; Luo, Yang Y; Guo, Yicheng Y; Wang, Maple M; Yu, Jian J; Zhang, Baoshan B; Kwong, Peter D PD; Graham, Barney S BS; Mascola, John R JR; Chang, Jennifer Y JY; Yin, Michael T MT; Sobieszczyk, Magdalena M; Kyratsous, Christos A CA; Shapiro, Lawrence L; Sheng, Zizhang Z; Huang, Yaoxing Y; Ho, David D DD

Publication Date: 2021-02-12

Variant appearance in text: 225: D215G

PubMed Link: 33532778

Variant Present in the following documents:

• nihpp-2021.01.25.428137.pdf

View BVdb publication page

---

A Multipronged Approach Establishes Covalent Modification of β-Tubulin as the Mode of Action of Benzamide Anti-cancer Toxins.

Journal Of Medicinal Chemistry

Povedano, Juan Manuel JM; Rallabandi, Rameshu R; Bai, Xin X; Ye, Xuecheng X; Liou, Joel J; Chen, Hong H; Kim, Jiwoong J; Xie, Yang Y; Posner, Bruce B; Rice, Luke L; De Brabander, Jef K JK; McFadden, David G DG

Publication Date: 2020-11-25

Variant appearance in text: 225: 644A>G

PubMed Link: 33180487

Variant Present in the following documents:

• jm0c01482_si_002.xlsx, sheet 1

View BVdb publication page

---

North-Western Himalayan Common Beans: Population Structure and Mapping of Quantitative Anthracnose Resistance Through Genome Wide Association Study.

Frontiers In Plant Science

Banoo, Aqleema A; Nabi, Asha A; Rasool, Rovidha S RS; Mahiya-Farooq, ; Shah, Mehraj D MD; Ahmad, Mushtaq M; Sofi, Parvaze A PA; Aasiya-Nabi, ; Itoo, Hamidullah H; Sharma, P N PN; Padder, Bilal A BA

Publication Date: 2020

Variant appearance in text: 225: 644A>G

PubMed Link: 33123180

Variant Present in the following documents:

• Table_3.xlsx, sheet 1

View BVdb publication page

---

Comprehensive annotations of the mutational spectra of SARS-CoV-2 spike protein: a fast and accurate pipeline.

Transboundary And Emerging Diseases

Rahman, Mohammad Shaminur MS; Islam, Mohammad Rafiul MR; Hoque, Mohammad Nazmul MN; Alam, Abu Sayed Mohammad Rubayet Ul ASMRU; Akther, Masuda M; Puspo, Joynob Akter JA; Akter, Salma S; Anwar, Azraf A; Sultana, Munawar M; Hossain, Mohammad Anwar MA

Publication Date: 2021-05

Variant appearance in text: 225: D215G

PubMed Link: 32954666

Variant Present in the following documents:

• TBED-9999-na-s003.xlsx, sheet 1

View BVdb publication page

---

Prediction of the functional impact of missense variants in BRCA1 and BRCA2 with BRCA-ML.

Npj Breast Cancer

Hart, Steven N SN; Polley, Eric C EC; Shimelis, Hermella H; Yadav, Siddhartha S; Couch, Fergus J FJ

Publication Date: 2020

Variant appearance in text: 225: 644A>G

PubMed Link: 32377563

Variant Present in the following documents:

• 41523_2020_159_MOESM3_ESM.xlsx, sheet 1

View BVdb publication page

---

Hints for Genetic and Clinical Differentiation of Adult-Onset Monogenic Autoinflammatory Diseases.

Mediators Of Inflammation

Gaggiano, Carla C; Rigante, Donato D; Vitale, Antonio A; Lucherini, Orso Maria OM; Fabbiani, Alessandra A; Capozio, Giovanna G; Marzo, Chiara C; Gelardi, Viviana V; Grosso, Salvatore S; Frediani, Bruno B; Renieri, Alessandra A; Cantarini, Luca L

Publication Date: 2019

Variant appearance in text: 225: 644A>G

PubMed Link: 32082075

Variant Present in the following documents:

• MI2019-3293145.pdf

View BVdb publication page

---

Transcriptomic signature reveals mechanism of flower bud distortion in witches'-broom disease of soybean (Glycine max).

Bmc Plant Biology

Jaiswal, Sarika S; Jadhav, Pravin V PV; Jasrotia, Rahul Singh RS; Kale, Prashant B PB; Kad, Snehal K SK; Moharil, Mangesh P MP; Dudhare, Mahendra S MS; Kheni, Jashminkumar J; Deshmukh, Amit G AG; Mane, Shyamsundar S SS; Nandanwar, Ravindra S RS; Penna, Suprasanna S; Manjaya, Joy G JG; Iquebal, Mir Asif MA; Tomar, Rukam Singh RS; Kawar, Prashant G PG; Rai, Anil A; Kumar, Dinesh D

Publication Date: 2019-01-15

Variant appearance in text: 225: 644A>G

PubMed Link: 30646861

Variant Present in the following documents:

• 12870_2018_1601_MOESM7_ESM.xlsx, sheet 1

View BVdb publication page

---

Integrated genomic and metabolomic profiling of ISC1, an emerging Leishmania donovani population in the Indian subcontinent.

Infection, Genetics And Evolution : Journal Of Molecular Epidemiology And Evolutionary Genetics In Infectious Diseases

Cuypers, Bart B; Berg, Maya M; Imamura, Hideo H; Dumetz, Franck F; De Muylder, Géraldine G; Domagalska, Malgorzata A MA; Rijal, Suman S; Bhattarai, Narayan Raj NR; Maes, Ilse I; Sanders, Mandy M; Cotton, James A JA; Meysman, Pieter P; Laukens, Kris K; Dujardin, Jean-Claude JC

Publication Date: 2018-08

Variant appearance in text: 225: 644A>G

PubMed Link: 29679745

Variant Present in the following documents:

• mmc3.xlsx, sheet 1

View BVdb publication page

---

NF1 mutations in conjunctival melanoma.

British Journal Of Cancer

Scholz, S L SL; Cosgarea, I I; Süßkind, D D; Murali, R R; Möller, I I; Reis, H H; Leonardelli, S S; Schilling, B B; Schimming, T T; Hadaschik, E E; Franklin, C C; Paschen, A A; Sucker, A A; Steuhl, K P KP; Schadendorf, D D; Westekemper, H H; Griewank, K G KG

Publication Date: 2018-05

Variant appearance in text: 225: Asp215Gly

PubMed Link: 29559732

Variant Present in the following documents:

• 41416_2018_46_MOESM4_ESM.xlsx, sheet 1

View BVdb publication page

---

Variant discovery in the sheep milk transcriptome using RNA sequencing.

Bmc Genomics

Suárez-Vega, Aroa A; Gutiérrez-Gil, Beatriz B; Klopp, Christophe C; Tosser-Klopp, Gwenola G; Arranz, Juan José JJ

Publication Date: 2017-02-15

Variant appearance in text: 225: 644A>G

PubMed Link: 28202015

Variant Present in the following documents:

• 12864_2017_3581_MOESM1_ESM.xlsx, sheet 1

View BVdb publication page

---

Identification and dissection of Ca(2+)-binding sites in the extracellular domain of Ca(2+)-sensing receptor.

The Journal Of Biological Chemistry

Huang, Yun Y; Zhou, Yubin Y; Yang, Wei W; Butters, Robert R; Lee, Hsiau-Wei HW; Li, Shunyi S; Castiblanco, Adriana A; Brown, Edward M EM; Yang, Jenny J JJ

Publication Date: 2007-06-29

Variant appearance in text: 225: D215G

PubMed Link: 17478419

Variant Present in the following documents:

• Main text

View BVdb publication page

---